GBrowse Details

Vigan.08G193200.01

Basic Information:
Name: Vigan.08G193200.01
Multiple alignment
Variant Information
Position: Chr08:17154930..17158210 (+ strand)
Length: 3281
Functional Information:
Description: Similar to uncharacterized protein. [F6I4V3, Vitis vinifera]
GO: Biological Process: intracellular protein transport (GO:0006886)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, SAR1-type (IPR006687)
Small GTPase superfamily, ARF/SAR type (IPR006689)
Small GTPase superfamily, ARF type (IPR024156)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:99.14,66.49,209.74,107.86,275.96,300 .00,276.59,227.78
Automatic updates:
Name: NM_001250563 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499890 (LOC100499890), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001354077 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ADP-ribosylation factor (ARF), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001354834 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ADP-ribosylation factor (LOC100527744), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001354835 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ADP-ribosylation factor (LOC100527744), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:17154930..17155118 (+ strand)
Length: 189
Type: five_prime_UTR
Position: Chr08:17155586..17155596 (+ strand)
Length: 11
Type: five_prime_UTR
Position: Chr08:17155597..17155744 (+ strand)
Length: 148
Type: CDS
Position: Chr08:17156196..17156266 (+ strand)
Length: 71
Type: CDS
Position: Chr08:17157398..17157517 (+ strand)
Length: 120
Type: CDS
Position: Chr08:17157625..17157743 (+ strand)
Length: 119
Type: CDS
Position: Chr08:17157839..17157920 (+ strand)
Length: 82
Type: CDS
Position: Chr08:17158017..17158022 (+ strand)
Length: 6
Type: CDS
Position: Chr08:17158023..17158210 (+ strand)
Length: 188
Type: three_prime_UTR

>Vigan.08G193200.01 class=Sequence position=Chr08:17154930..17158210 (+ strand)
GTAAAGTGGT AAACCGAAAT ACGAAGTGGA CCGAATAAAC GACGACGTAC AGAAATTTTG GATCTTTGTC CGCGTTCTAT
AAATCAGCGA AGGCCTTCAT CTGAGACCAC TTCCATTCTT TTCTCTTTGT CGCAAAGAGA AGAGATCTGC CTCCTCCTTC
TTCCCAAGCA TATCTCTCTT CCTCTCAAGG TATGTTTCTC TCTCTCCCTC TCTCTCTCTC TCTCCCCTTT CAGTTGATCT
CCTCGCCATT TCCATCTTCA CTACCTCATA TCCTATTATT TATTCTTTCT TTGCTTTGCA TTTTTCTGTT ATACCATCCA
ATTTCGTCTG ATTTGATAAT CTGTTACTTC ATCATTGATT AGTTTCGCGA TTTCTCGTAT CTTGATTTAC GATCTGGCTG
TGTCCTCGCT TGATCTGCAT CGCGTGTCGT GAGATCGCAC GATTTTAATA TCCACCTTGT TTTCTTTTAT TTATCGATCT
CTCTGTCAGA TCGGAACTTA TTTCTGGTTG GTCATGGATT CAGCACTGTC TGATTCCCGT TCATTTTACA TGTTGTATAT
TTCTGATTGT GGTTATTTTT GTTTGGATTT GATTTGTTGC GGTTGAAATT TGAATTGAAT GGACTGGTGT TGTTGTGCGG
TGATTTGTGG ACTCAGAATC GTTGAAAATG GGGCTGTCCT TCACCAAGTT GTTCAGCCGG CTGTTTGCCA AGAAAGAGAT
GCGTATACTC ATGGTCGGTC TCGATGCTGC GGGTAAGACC ACCATTCTGT ACAAGCTCAA GCTGGGAGAG ATTGTAACCA
CCATTCCCAC CATTGGTAAG TTTCATTTAT TCTTTCTACT TCGATCTGTA TTGACTGATG CAATGGGTTA GAGTATAGAG
AGGACATTAG TAACTAATTC AACTGATGGA GGGATCAATA TATCTAATGT GGGATCAATT CCGGATTTGG CCTCTTCTGT
CCCTTTCCGT TCATTTGATG CTCATATTAT ATTTTTTCCT TCAATTTTAC TTGATCTGTT CAGGCTAGCC TTAAGATCTT
CTGGTACTAG ATTAACCTTA CTTTACAAGT TTTTAATTAT TATATATGGA GGTGGAAGAA GTATAGTCTA TCTATTGTTC
TTTGCTGTGT ACTGAAAACG GTATCGATCA ATGTGCTTAG CCTAGATGTA ATATATCCAC TATCATTGTT GGCATGATAA
TGTAATATCT TGCTCTCCTA ATAATAAGTA CCTTGTGAGA TTCTGCTAAT ACTTCATTTG ACGCAGGGTT TAATGTGGAA
ACTGTGGAAT ATAAGAACAT CAGCTTCACT GTTTGGGATG TGGGAGGCCA AGACAAGGTA TTTACTCTCC CTGCATCTTC
ATGTCCAACA TCTGACATTA TAGTGTACTT CGTTATGGGT GACCTAGCAA CTGTCCTCAT TGCCTTTGTT GATTTTATGG
CGTGATCATT TACTGAAACT TTGCTTGCAC TGATATGCAT ATCACGTGGT TTACATTCCA AAATTGAGTT TTGATGAGTA
AGTTTTAGTG GCGAGTCAAT GGATGCCCAT TTGGTGTACT CCTCCAAGAT GATATATAGA CGAGAATCAA AGTCTGTTTG
TTGTTTTGAG GTGCAAGTCA TTAATTTTGT AATTGTACCC AATGGGTTGG GTTGTTGGAC ACTACTTCGG AATAAAGTCA
TTGTCCTGAC GCACTCGAGG TCTGGGGTCT GTGTAACTTA CCAAGGGATG AATCATACTT AGCAAACTAG AGTTTGCAAT
TTCGCTTTAG ATCTCTACTT TAAATGCACC ACCGACTTTG GTAAACTAAT CCCGAAAATC AGCAACATAC CCTAGAAGGA
AGTGAATTTA TACCTAGACG ATAGGGGGTG ATGATGATGA ACTTGATCAC AAATCTCACC ATCCACAACC TTGAATGCTC
TGGTCTAGGT CACGTCTAGT AGATCGATAC CAATATAGTA ACAATTTTGT GTTAATCAAT GTCGCAAAAC GAGTTGAATG
GAAACTTATT ATCTTATCTT TTGTTGGTTA GTTAAACTTT CTTAAACCAC TTGAAGAAGC AAATAAGAAG GGAAAATGAA
ATGAACTCCT CTATATTTAG TTGGGATTAT ACATAAACTA ATTTATAGAA ACTTTCTTAC ATTAGTTTCT CTAAAAGTTG
AATTTTTTCT TAAACTAATT TTAGTTTCTC CTATAAGTAC TTTGGTAAAA GTTTACTCAA ACTAATCCTA TGCCTATTTT
TCTATTTCAA GACCAGGGGT GTACTCAGCC TGACCAGTGT GATTAAGTTC TCAATCATGC AATTTATAAC TTTAGTCTTT
ACAGGGTTTG TGTATGTGAT AGCTCTCTAG CTCAAATTGT TTTACCTTTG ACTTCTTGTC ATTAATTATG CCTCTTCAAT
TTATTTTGCA AACATTTTCT CAGTCCGATA GTCATCAGCA CTCACCATCA ATGTGTTTTT CCTTGTAGAT CCGCCCATTG
TGGAGACATT ACTTCCAAAA TACCCAAGGA CTTATCTTTG TGGTTGATAG CAATGACAGG GACCGAGTTG TTGAAGCTAG
GGATGAGCTG CATAGAATGC TGAATGAGGT AACAACTGGA TCATGAATGA GTGAACATGT AAAGGGTATC TTATTTCATA
CTGTTTGATT TCTCAAAATA ATTCTGGATG TTATTGGATA ATCTTACTTT GGTAGGATGA GTTGAGAGAT GCCGTGCTTC
TAGTTTTTGC CAACAAGCAA GATCTTCCAA ATGCTATGAA TGCTGCGGAG ATCACTGATA AGCTTGGCCT TCATTCCCTC
CGCCAGCGTC ACTGGTAAAC TAGAATTTCG CTGCCAACAT TCTTTTCCTC ACCGTCCTTA TCTGTCTGCT TTCACTATTG
ATTCTCAACT ACGTGTTCTC TACATGCAGG TATATCCAGA GCACATGCGC CACATCTGGT GAAGGGCTCT ATGAAGGACT
TGACTGGCTC TCAAACAACA TTGCAAACAA GGTTAATACC AAATGAGTGG AGGATTTGCA AACTGGGCAC TTTAAATTAC
ATCTTAAATC TTTGACTGAT ACTTTTTCTT TTTTAAATGA TTTGCAGGCA TAGAGATTTA TTAGTTGAAG GATGCAAGGA
AGTTGAGTTT ACTTCGCCCA TCTCTGCTTT TATGATTTTC TTGTCCTTAG ATTTTCATTG TTCGGCCATG TATTATTTTT
CTTCAAAAAG AACAGCGGTC TGTTACTGAG GAATAATTTG ATTTTTTTTT CCATGTATAA CCAAATAGCA TTGTTTACGA
T

>Vigan.08G193200.01
GTAAAGTGGT AAACCGAAAT ACGAAGTGGA CCGAATAAAC GACGACGTAC AGAAATTTTG GATCTTTGTC CGCGTTCTAT
AAATCAGCGA AGGCCTTCAT CTGAGACCAC TTCCATTCTT TTCTCTTTGT CGCAAAGAGA AGAGATCTGC CTCCTCCTTC
TTCCCAAGCA TATCTCTCTT CCTCTCAAGA ATCGTTGAAA ATGGGGCTGT CCTTCACCAA GTTGTTCAGC CGGCTGTTTG
CCAAGAAAGA GATGCGTATA CTCATGGTCG GTCTCGATGC TGCGGGTAAG ACCACCATTC TGTACAAGCT CAAGCTGGGA
GAGATTGTAA CCACCATTCC CACCATTGGG TTTAATGTGG AAACTGTGGA ATATAAGAAC ATCAGCTTCA CTGTTTGGGA
TGTGGGAGGC CAAGACAAGA TCCGCCCATT GTGGAGACAT TACTTCCAAA ATACCCAAGG ACTTATCTTT GTGGTTGATA
GCAATGACAG GGACCGAGTT GTTGAAGCTA GGGATGAGCT GCATAGAATG CTGAATGAGG ATGAGTTGAG AGATGCCGTG
CTTCTAGTTT TTGCCAACAA GCAAGATCTT CCAAATGCTA TGAATGCTGC GGAGATCACT GATAAGCTTG GCCTTCATTC
CCTCCGCCAG CGTCACTGGT ATATCCAGAG CACATGCGCC ACATCTGGTG AAGGGCTCTA TGAAGGACTT GACTGGCTCT
CAAACAACAT TGCAAACAAG GCATAGAGAT TTATTAGTTG AAGGATGCAA GGAAGTTGAG TTTACTTCGC CCATCTCTGC
TTTTATGATT TTCTTGTCCT TAGATTTTCA TTGTTCGGCC ATGTATTATT TTTCTTCAAA AAGAACAGCG GTCTGTTACT
GAGGAATAAT TTGATTTTTT TTTCCATGTA TAACCAAATA GCATTGTTTA CGAT

>Vigan.08G193200.01
ATGGGGCTGT CCTTCACCAA GTTGTTCAGC CGGCTGTTTG CCAAGAAAGA GATGCGTATA CTCATGGTCG GTCTCGATGC
TGCGGGTAAG ACCACCATTC TGTACAAGCT CAAGCTGGGA GAGATTGTAA CCACCATTCC CACCATTGGG TTTAATGTGG
AAACTGTGGA ATATAAGAAC ATCAGCTTCA CTGTTTGGGA TGTGGGAGGC CAAGACAAGA TCCGCCCATT GTGGAGACAT
TACTTCCAAA ATACCCAAGG ACTTATCTTT GTGGTTGATA GCAATGACAG GGACCGAGTT GTTGAAGCTA GGGATGAGCT
GCATAGAATG CTGAATGAGG ATGAGTTGAG AGATGCCGTG CTTCTAGTTT TTGCCAACAA GCAAGATCTT CCAAATGCTA
TGAATGCTGC GGAGATCACT GATAAGCTTG GCCTTCATTC CCTCCGCCAG CGTCACTGGT ATATCCAGAG CACATGCGCC
ACATCTGGTG AAGGGCTCTA TGAAGGACTT GACTGGCTCT CAAACAACAT TGCAAACAAG GCATAG

>Vigan.08G193200.01
MGLSFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH
YFQNTQGLIF VVDSNDRDRV VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA
TSGEGLYEGL DWLSNNIANK A*