GBrowse Details

Vigan.08G187400.01

Basic Information:
Name: Vigan.08G187400.01
Multiple alignment
Variant Information
Position: Chr08:16623359..16627430 (- strand)
Length: 4072
Functional Information:
Description: Similar to Eukaryotic translation initiation factor 3 subunit M. [V7BGT1, Phaseolus vulgaris]
GO: Cellular Component: cytoplasm (GO:0005737)
Cellular Component: eukaryotic translation initiation factor 3 complex (GO:0005852)
Molecular Function: translation initiation factor activity (GO:0003743)
Molecular Function: protein binding (GO:0005515)
InterPro: Proteasome component (PCI) domain (IPR000717)
Winged helix-turn-helix DNA-binding domain (IPR011991)
Eukaryotic translation initiation factor 3 subunit M (IPR027528)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:68.43,64.44,49.15,50.75,76.13,57.69,62.57,48.95
Arabidopsis thaliana homolog: AT3G02200.2, AT5G15610.1
Automatic updates:
Name: NM_001255021 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max eukaryotic translation initiation factor 3 subunit M-like (LOC100786194), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255618 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max eukaryotic translation initiation factor 3 subunit M-like (LOC100788645), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:16623359..16623715 (- strand)
Length: 357
Type: three_prime_UTR
Position: Chr08:16623716..16623805 (- strand)
Length: 90
Type: CDS
Position: Chr08:16624342..16624411 (- strand)
Length: 70
Type: CDS
Position: Chr08:16624571..16624668 (- strand)
Length: 98
Type: CDS
Position: Chr08:16624747..16624856 (- strand)
Length: 110
Type: CDS
Position: Chr08:16624957..16625107 (- strand)
Length: 151
Type: CDS
Position: Chr08:16625523..16625661 (- strand)
Length: 139
Type: CDS
Position: Chr08:16625793..16626005 (- strand)
Length: 213
Type: CDS
Position: Chr08:16626099..16626237 (- strand)
Length: 139
Type: CDS
Position: Chr08:16626543..16626672 (- strand)
Length: 130
Type: CDS
Position: Chr08:16627264..16627356 (- strand)
Length: 93
Type: CDS
Position: Chr08:16627357..16627430 (- strand)
Length: 74
Type: five_prime_UTR

>Vigan.08G187400.01 class=Sequence position=Chr08:16623359..16627430 (- strand)
GGGTTTTATT TGCTCACACC TTCTTCTCCG CAGCGCGAGT CAGCTAGGGT TTACAATATC GCAGTTCAGA AAACATGGCG
ACCGTGGTGC CAACCTCCGA AGAAGACGCT GCCCTCACCG TCGTTCGATT CGCCTCTGAA CTTGCCTGGG CTGATGCCGG
TCCTGAGGTC TTTCTTCCTA ACTCTTCTCT CTATCTTTCA CTGTCTTCAG CCTGCTCTGT GCTTTTTATT CCGTGTATTT
GTGGATGGTT CTTTATTTGG TCTTGTTGTT GGCTTCTGTA TGAGATATTT GCCTTCGATA GTCTGTTAGG GATATGATGG
TCTGTTCACG ATCCACTGTT TATATGCTTA GTTGAAATGC CTGTGGAACT TAAAATTGAA TCCGAATTTG TTAAACTGTG
ATTTTGGATT GAATACTCAG ATTTTGGTAT GTTCCTTGGA ACTCGTTCTG CATCATTATT ATTTTGTCTT AGAAATTTCC
GGATTCAAGT CACTGTTCAG AAAATTAAAA GAGGGAGTAA CATTTAATTG TTCGTTTGGT AGGTTGGATG GGAAGAGATT
GATTTAAAAA TATCAGGAAT AGTATTTTTT TATGTAGTTT TAGGGTTTGT TGGTCTACGA CATTTTCCTC TCTCGCTTCT
CTTTACAGTC TCGCTTCTCT GTACAGTCAC GCTTCTTTTT AAATGTGATG CATTGTTGCG TTCTTGTTTG ATTTTGGTGT
TATTGACAAA TTTAGTTCTT CCCATCATGT CTTGTCAGGT TGCTGAGCCA CAAGTTAGTA GACTCTGCAT GGAGGCTGAA
GAGTTCATTG GTATGGGAAA GTGGTTGGAG TTAGCATCAT TGATGATTAC CTCTGCTGAA TTGATTTTCT CTAAGGTTTC
TGAAAAAGGT AGAGTTATAT TTCTTTTGTT GATATTGGTA TAAACAGCTT TTGATGGATG CTGTCATCTG TGCCGGATCC
TTTTCCAACT CTGCCACTTT GTTTGGTTGT GACATTGTTA ACCTGCAATA TTCACTATCT TTTTTTCTTT ATTCTGTTGC
ATTTGTAGCT TCCTTCTTGG TTGTTTCATT TCTCACTTTT GGTTTAGAAT CCAGTTTGTT ATTACATAGA GAACTTCTCA
GGGTGATAGG ATTGCCATTA ATGGTTCAGC TTAATCTGAG TGTGTTAACA AGTTCTGTCA TATCTTGTAC CAGATATAGA
GTCCATCTTC ACTATCATTT GCAATCTTGT TACAAAGACT GCGAATCCAG ATGAAGCAAT GGAGATTGTA AAAGTTGTAA
CTGCAAAAAT ACTTCAGCAG CCAAACGAAA AGCCTGTTGT GCGATTGAAA ATGTAATATC ACATGCTGCT TGGTTTAAAA
TTTCTGGTCA TGCATTATGG TGTGACTATT TATATTATTA TTTTTGAAGT ATCTTTTCTC TACAGTTTGA TCAATCTGTA
CAATCTTTTG GAGACTCCAT ACTGCCAGTT TTATGTTTAC ATGAAGACAC TGAATTTAGC TGTTGATGGG AAAGTCACTG
AATTCATTAT ACCTTCATTC AAAAAAATTG ACAACTTTTT GAAAGACTGG AAAATCGGGA TACCGGAACA GAGAGAGCTC
TTTCTTGCTA TTTCTAATAT TTTGAAGGAA AATAAAAGGT ATAGCAGATT CCTGTATATG TCAATTTTAT TTTTGTTCTC
TTTACCTCTC TTCAGAGTGG GAGTACTACC TGAGTTTTTT ATTTCATTTT TTAAACATGT AATTAGTATT TCATCTTACT
TTATCTCAGT ATGTCAAAGG ATGCTTTAAA GTTCCTGACC AGTTATCTGG CAACTTTTTT GGGAGAAGAT GCCCATGTTT
TGAGTGAAGC CAAGGAGGAG GGTGCACATG CAATTGTGGA ATTTGTTAGG GCTCCTGACA TCTTTCAGGT ACCTTGTCCA
ATATGTAATT ACGATGTTTG AATGGTTGTA TAATCTTACA GTTTCAGCTT CCTATGTTCA ACTATTTTTA GGAGTTAACT
TTTTGTTTTG TCAGTAGTAA TATCACAAAT TTTTCAATAG CTTCTACTGC TTTGATAGTG CATGATTATC TGGTCTGTAT
CTGGATGTGT ATAATTATAT AGAAGCATGT TACAGTGGAA ATGGAAATTT TCTGACCAGT ACTTAAACAG ATAAGGTGAT
TAGGGCGCTT TTTGTTATAG GTCATCTTTA TTTAGTAATT GCAATTTTTG TTTTTTGTCG TGGAATTTTA CATAGATATT
TAAGTTTGCC ATTTTTAATG CCATTGTTGA TCTAGATTGC TTTGAGTTCT AGAAGAGCAT TCACTAAGTT GATTATCCTG
TAGTGTGATT TACTAGACTT GCCGGCTGTT GCTCAACTGG AGAAGGATGC CAAATATGGT TTGTTATATG AGCTTCTTAA
GATTTTTGTT ACTCAGAGGC TGGATGCTTA CTTAGAATAT CATGCTACAA ATTCCACCTT GTTGAAAACT TATGGTAAAC
ACTGTTCATG AACGAATATT GTTTACATGT AGATACATAA CTACGTTCTA CTTTATGTTA CTATCAAAAT TTTTTGATGT
TATGATGTTT TTAGGCCTTG TACATGAAGA ATGCATTGCT AAAATGAGGC TGATGTCATT GGTGGATCTT AGCTCCGATG
CATCTGGCAC CATTCCTTAT GAACTTATCA GGGACACACT TCAGGTAAAT TTGTATTTTT ATTTTATGTT TTGTAATTGT
GTTCTTCCTA TCATAATTGA AATCTTGCAA CATTCCCTTC AGATCAATGA TGATGAGGTG GAACTGTGGG TGGTTAGAGC
AATAACTGCC AAGTTAATTG ACTGTAAGTT GGATCAAATG AATCAAGTAG TGGTTGTTAG GTATGTTCTA CCTCTATCGA
TTGTCTTTCT CTGCACCTAC TACCTTCCTA TACACGCACC TCTTCACCAT AACTATTTTT GTTGAGCATC ATATATCTCT
CCACGTTGAA ACTTTATTTT ACTGTTATGC ACACTTTAAT GCAAGTCTTA AATGTGCAGT CATCCTACTG ATCGTGTGTT
TGGTCAGCAT CAATGGCAGG CACTGAGAAC AAAGCTGGTG ACATGGAGGG TAAATAATTT CTCGTCTGCA ATTTTTAGAA
TTATAATTAG TTATGCCATA ATTCACAGAA ATATTTATAC TATTCCTCTG ATACATCCAT CCACATAGTA CGAGTATGAT
AATTGAATTC ATTTTAAAAA GGAAAGAACT ATCGGTAGCT ACTATTCAGA ATTTATTGTG ACCTTCAATA ACATGAGTAA
ATATTTTAAG ATTTGAAAAG CCTGTCAATT TGAATCATGC TGTCTGTTGA AATGCTTGAC ATTTTTATAA ATAAAAATTC
AGTTTGTGTA CCTCAAACGA CAAATTTCAT CTATGCATTA TTGTTGGTGT ATACATTTTA TATATTTTAT TTTATTTTTC
CTGGAAAATG TTTGCACGAC TTATCTAGCT TTTTACACGA GATCATTATT ATGCGATTTG GTCTACATGA TGTTAGTGCA
CTTGGATTTT AATTGTTGAG TAATACAGAT GAAATGTCAT TGCTTCAACA CAAGTAACTG ATGTTCTATT CACTGTGATG
TTTGATAAAT GTTATCTATT TCTAGGGAAA TGTTGCGAAT GTTATCAGTA CCATTCAGGC CAACAAAATA ACGGAAGATG
GGCCCCAGGC TGCCCAAGGG TTGGTAGCTC GGTGAGGACG TTTTCGAGTG AAGCAATCAG CCGAGTATCT AGATTTTATC
CAAGTGGAAT TTTTTGATCT TAAAAACTGT AATTTGTTTT GTTACAAATT CATAAATTTA TTTTAGTTGA CTACTGACTC
TAATTGTACT ACCCAACTTT GGGAGAGAGC TATTATTATT GAATTTTATG TTTTGTTGAC CTGCCTCACC ATTTCGTCGA
GGATATTCTC CCAGTACTTC GAACGAACAA CTAATCTAAA GTTGTCTCCG CTAAAAATTG TGCAATGAGT GCTCTCATGG
GAGCTTTCAC CTTAAGTTTT ATTGATTGTA CATCATAGCT AGAGTGAAAC TCCGAATTTG CGGTCTTATC TT

>Vigan.08G187400.01
GGGTTTTATT TGCTCACACC TTCTTCTCCG CAGCGCGAGT CAGCTAGGGT TTACAATATC GCAGTTCAGA AAACATGGCG
ACCGTGGTGC CAACCTCCGA AGAAGACGCT GCCCTCACCG TCGTTCGATT CGCCTCTGAA CTTGCCTGGG CTGATGCCGG
TCCTGAGGTT GCTGAGCCAC AAGTTAGTAG ACTCTGCATG GAGGCTGAAG AGTTCATTGG TATGGGAAAG TGGTTGGAGT
TAGCATCATT GATGATTACC TCTGCTGAAT TGATTTTCTC TAAGGTTTCT GAAAAAGATA TAGAGTCCAT CTTCACTATC
ATTTGCAATC TTGTTACAAA GACTGCGAAT CCAGATGAAG CAATGGAGAT TGTAAAAGTT GTAACTGCAA AAATACTTCA
GCAGCCAAAC GAAAAGCCTG TTGTGCGATT GAAAATTTTG ATCAATCTGT ACAATCTTTT GGAGACTCCA TACTGCCAGT
TTTATGTTTA CATGAAGACA CTGAATTTAG CTGTTGATGG GAAAGTCACT GAATTCATTA TACCTTCATT CAAAAAAATT
GACAACTTTT TGAAAGACTG GAAAATCGGG ATACCGGAAC AGAGAGAGCT CTTTCTTGCT ATTTCTAATA TTTTGAAGGA
AAATAAAAGT ATGTCAAAGG ATGCTTTAAA GTTCCTGACC AGTTATCTGG CAACTTTTTT GGGAGAAGAT GCCCATGTTT
TGAGTGAAGC CAAGGAGGAG GGTGCACATG CAATTGTGGA ATTTGTTAGG GCTCCTGACA TCTTTCAGTG TGATTTACTA
GACTTGCCGG CTGTTGCTCA ACTGGAGAAG GATGCCAAAT ATGGTTTGTT ATATGAGCTT CTTAAGATTT TTGTTACTCA
GAGGCTGGAT GCTTACTTAG AATATCATGC TACAAATTCC ACCTTGTTGA AAACTTATGG CCTTGTACAT GAAGAATGCA
TTGCTAAAAT GAGGCTGATG TCATTGGTGG ATCTTAGCTC CGATGCATCT GGCACCATTC CTTATGAACT TATCAGGGAC
ACACTTCAGA TCAATGATGA TGAGGTGGAA CTGTGGGTGG TTAGAGCAAT AACTGCCAAG TTAATTGACT GTAAGTTGGA
TCAAATGAAT CAAGTAGTGG TTGTTAGTCA TCCTACTGAT CGTGTGTTTG GTCAGCATCA ATGGCAGGCA CTGAGAACAA
AGCTGGTGAC ATGGAGGGGA AATGTTGCGA ATGTTATCAG TACCATTCAG GCCAACAAAA TAACGGAAGA TGGGCCCCAG
GCTGCCCAAG GGTTGGTAGC TCGGTGAGGA CGTTTTCGAG TGAAGCAATC AGCCGAGTAT CTAGATTTTA TCCAAGTGGA
ATTTTTTGAT CTTAAAAACT GTAATTTGTT TTGTTACAAA TTCATAAATT TATTTTAGTT GACTACTGAC TCTAATTGTA
CTACCCAACT TTGGGAGAGA GCTATTATTA TTGAATTTTA TGTTTTGTTG ACCTGCCTCA CCATTTCGTC GAGGATATTC
TCCCAGTACT TCGAACGAAC AACTAATCTA AAGTTGTCTC CGCTAAAAAT TGTGCAATGA GTGCTCTCAT GGGAGCTTTC
ACCTTAAGTT TTATTGATTG TACATCATAG CTAGAGTGAA ACTCCGAATT TGCGGTCTTA TCTT

>Vigan.08G187400.01
ATGGCGACCG TGGTGCCAAC CTCCGAAGAA GACGCTGCCC TCACCGTCGT TCGATTCGCC TCTGAACTTG CCTGGGCTGA
TGCCGGTCCT GAGGTTGCTG AGCCACAAGT TAGTAGACTC TGCATGGAGG CTGAAGAGTT CATTGGTATG GGAAAGTGGT
TGGAGTTAGC ATCATTGATG ATTACCTCTG CTGAATTGAT TTTCTCTAAG GTTTCTGAAA AAGATATAGA GTCCATCTTC
ACTATCATTT GCAATCTTGT TACAAAGACT GCGAATCCAG ATGAAGCAAT GGAGATTGTA AAAGTTGTAA CTGCAAAAAT
ACTTCAGCAG CCAAACGAAA AGCCTGTTGT GCGATTGAAA ATTTTGATCA ATCTGTACAA TCTTTTGGAG ACTCCATACT
GCCAGTTTTA TGTTTACATG AAGACACTGA ATTTAGCTGT TGATGGGAAA GTCACTGAAT TCATTATACC TTCATTCAAA
AAAATTGACA ACTTTTTGAA AGACTGGAAA ATCGGGATAC CGGAACAGAG AGAGCTCTTT CTTGCTATTT CTAATATTTT
GAAGGAAAAT AAAAGTATGT CAAAGGATGC TTTAAAGTTC CTGACCAGTT ATCTGGCAAC TTTTTTGGGA GAAGATGCCC
ATGTTTTGAG TGAAGCCAAG GAGGAGGGTG CACATGCAAT TGTGGAATTT GTTAGGGCTC CTGACATCTT TCAGTGTGAT
TTACTAGACT TGCCGGCTGT TGCTCAACTG GAGAAGGATG CCAAATATGG TTTGTTATAT GAGCTTCTTA AGATTTTTGT
TACTCAGAGG CTGGATGCTT ACTTAGAATA TCATGCTACA AATTCCACCT TGTTGAAAAC TTATGGCCTT GTACATGAAG
AATGCATTGC TAAAATGAGG CTGATGTCAT TGGTGGATCT TAGCTCCGAT GCATCTGGCA CCATTCCTTA TGAACTTATC
AGGGACACAC TTCAGATCAA TGATGATGAG GTGGAACTGT GGGTGGTTAG AGCAATAACT GCCAAGTTAA TTGACTGTAA
GTTGGATCAA ATGAATCAAG TAGTGGTTGT TAGTCATCCT ACTGATCGTG TGTTTGGTCA GCATCAATGG CAGGCACTGA
GAACAAAGCT GGTGACATGG AGGGGAAATG TTGCGAATGT TATCAGTACC ATTCAGGCCA ACAAAATAAC GGAAGATGGG
CCCCAGGCTG CCCAAGGGTT GGTAGCTCGG TGA

>Vigan.08G187400.01
MATVVPTSEE DAALTVVRFA SELAWADAGP EVAEPQVSRL CMEAEEFIGM GKWLELASLM ITSAELIFSK VSEKDIESIF
TIICNLVTKT ANPDEAMEIV KVVTAKILQQ PNEKPVVRLK ILINLYNLLE TPYCQFYVYM KTLNLAVDGK VTEFIIPSFK
KIDNFLKDWK IGIPEQRELF LAISNILKEN KSMSKDALKF LTSYLATFLG EDAHVLSEAK EEGAHAIVEF VRAPDIFQCD
LLDLPAVAQL EKDAKYGLLY ELLKIFVTQR LDAYLEYHAT NSTLLKTYGL VHEECIAKMR LMSLVDLSSD ASGTIPYELI
RDTLQINDDE VELWVVRAIT AKLIDCKLDQ MNQVVVVSHP TDRVFGQHQW QALRTKLVTW RGNVANVIST IQANKITEDG
PQAAQGLVAR *