GBrowse Details

Vigan.08G186700.01

Basic Information:
Name: Vigan.08G186700.01
Multiple alignment
Variant Information
Position: Chr08:16555532..16557324 (+ strand)
Length: 1793
Functional Information:
Description: Similar to Uncharacterized protein. [I1LAX5, Glycine max]
GO: Molecular Function: manganese ion binding (GO:0030145)
Molecular Function: nutrient reservoir activity (GO:0045735)
InterPro: Germin (IPR001929)
Cupin 1 (IPR006045)
RmlC-like cupin domain (IPR011051)
RmlC-like jelly roll fold (IPR014710)
Germin, manganese binding site (IPR019780)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.63,0.61,10.63,5.41,1.00,8.67,13.03,30.66
Automatic updates:
Name: NM_001252805 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cupin family protein (GMCUPIN20.1), mRNA.
PubMed ID: 25360675 NCBI(pubmed)
21059215 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:16555532..16555652 (+ strand)
Length: 121
Type: five_prime_UTR
Position: Chr08:16555653..16555761 (+ strand)
Length: 109
Type: CDS
Position: Chr08:16556406..16556950 (+ strand)
Length: 545
Type: CDS
Position: Chr08:16556951..16557324 (+ strand)
Length: 374
Type: three_prime_UTR

>Vigan.08G186700.01 class=Sequence position=Chr08:16555532..16557324 (+ strand)
CTGTGATGCT ATAAATATTA GTGTTCATCA TCCCAACACT TTCCAACTAC CAACTACTTT GCCTTCTTCT TTTTCCATTT
CCATTTCCAT TTTCTTAACT TATTCCCTTC AAAATTATAT TATGGCTAAC CACACTATGA AGCTGCTCAA CTTGCTTCTT
CTCTTAGCCA CCACCGTCTC ATCAGATCCT GACCTTCTTC AAGACCTCTG TGTCGCTGAC CTCTCCTCAG GTTCTCCTCT
TTTTACACCA TTCTATTCAT CTTTTACATT TTATATTTAT TTTCGAACAC AATCCCAAAA ATTAAAGCTT TTTATCTGAA
AATTTGAGTT TCCCCTCAAT TCTACTTGCA ATTCAGTTTT ACTGACAAAA AAACTCGGTT TGTAAATAAA TTTACAATTT
TTTTAAACAT GCAATCAAAA AAATGTCTGG TCCTCCTTTT TTCTGTTTCC AGCAGTTTTT TCCTCTTTGA ATGATTAAAT
TTGATCCTTT CTGTTCACTC TTGAATTCTT TTTTTCTTTG CTTACTTTGA TTTTCTTTAA ACCACGCCTA ACTCAACATC
ACTGTCCAAG ACATTCCACT TCTACCTACT ACTTTAATTT TGCTTTCTCC TGACTCCAGT GTTTAATCAT TTTAACTCAA
ATATATATAG TATTCCCACT CACATCATTA ACTTTTATTT GTCTCTTTCC TCTATTTATC AACACATCAC ACGTCAATAC
TTCCTTTGTT TTTATTCTTT CTAAAAACAA CCGTAAATTG CATCATTTTC AAGCATAACT CACAACTGGT GTATCAAAAT
GTTGTTAAAA TTTATGTTAA TGTATGATTG TCCTAGTAAT TAAAGAGTGG TTGTTACTAT GACTAAAAAA ACAGGTGTGA
AAGTGAATGG ATTCAGCTGC AAAGAAGCAT CTAAGATAAA TGCCTCAGAT TTCTTCTCGA ACATACTAGG AAAAGCAGGA
TCCACCAACA ACACCTTTGG GTCAATAGTG ACTGGAGCGA ATGTTGAGAA AGTCCCAGGA CTGAACACAC TTGGTGTGTC
TCTGTCAAGA ATTGACTATG CCCCAGATGG CATAAACCCT CCTCACACTC ACCCTCGTGC CACTGAGATT GTCTTTGTGC
TTGAAGGCCA ACTAGATGTA GGCTTCATAA CCACTTCCAA TCTCCTCATA TCAAAGACCA TTAGCAAGGG TGACATATTT
GTCTTTCCAA AAGGCTTGCT TCACTTCCAA CAGAACAATG CCAACGTCCC TGCTGCTGTC ATTTCAGCCT TCAACAGCCA
ACTTCCAGGG ACACAGTCAA TTGCTACAAC CTTGTTTTCT GCCACACCTT CACTTCCCGA CCATGTCTTG ACCAAGACCT
TCCAGGTTGG TACCAAAGTC GTTCAGAAAA TCAAGTCCAG GCTTGCACCT AAGAAGTAAA AACTGCTACA TTGGTTCGGC
TATCTTGTGT CTTCTCAACA ATAAATACTC CTTATTCATT CTTTCTGAAA ATTTCAAAAC CATTATCATA TAATGTGAAG
ATAAATTAAA ACTGCTTATT CTATAAAGAT TGATCCAGAT AGCTAATTGT TTCTCTTTCT CCATTTTCTT TATCATCTCT
TCTTTTAATC TTTTGTCATT CACCTTACAT TTCGTGGTTG GAACAACTCA TAAATTTGTT TAATAGTTTA AATTTGAAAG
ATCTTGCATT TCCGGTTATT AGTGTATAAC ATAATCTTCG ATCTAAACCT CAAAGTCATA GGTCTATGAC TTCTTCCGTG
TAAATTGTTC TTGTTTATGA CGTTCCTTTG CTT

>Vigan.08G186700.01
CTGTGATGCT ATAAATATTA GTGTTCATCA TCCCAACACT TTCCAACTAC CAACTACTTT GCCTTCTTCT TTTTCCATTT
CCATTTCCAT TTTCTTAACT TATTCCCTTC AAAATTATAT TATGGCTAAC CACACTATGA AGCTGCTCAA CTTGCTTCTT
CTCTTAGCCA CCACCGTCTC ATCAGATCCT GACCTTCTTC AAGACCTCTG TGTCGCTGAC CTCTCCTCAG GTGTGAAAGT
GAATGGATTC AGCTGCAAAG AAGCATCTAA GATAAATGCC TCAGATTTCT TCTCGAACAT ACTAGGAAAA GCAGGATCCA
CCAACAACAC CTTTGGGTCA ATAGTGACTG GAGCGAATGT TGAGAAAGTC CCAGGACTGA ACACACTTGG TGTGTCTCTG
TCAAGAATTG ACTATGCCCC AGATGGCATA AACCCTCCTC ACACTCACCC TCGTGCCACT GAGATTGTCT TTGTGCTTGA
AGGCCAACTA GATGTAGGCT TCATAACCAC TTCCAATCTC CTCATATCAA AGACCATTAG CAAGGGTGAC ATATTTGTCT
TTCCAAAAGG CTTGCTTCAC TTCCAACAGA ACAATGCCAA CGTCCCTGCT GCTGTCATTT CAGCCTTCAA CAGCCAACTT
CCAGGGACAC AGTCAATTGC TACAACCTTG TTTTCTGCCA CACCTTCACT TCCCGACCAT GTCTTGACCA AGACCTTCCA
GGTTGGTACC AAAGTCGTTC AGAAAATCAA GTCCAGGCTT GCACCTAAGA AGTAAAAACT GCTACATTGG TTCGGCTATC
TTGTGTCTTC TCAACAATAA ATACTCCTTA TTCATTCTTT CTGAAAATTT CAAAACCATT ATCATATAAT GTGAAGATAA
ATTAAAACTG CTTATTCTAT AAAGATTGAT CCAGATAGCT AATTGTTTCT CTTTCTCCAT TTTCTTTATC ATCTCTTCTT
TTAATCTTTT GTCATTCACC TTACATTTCG TGGTTGGAAC AACTCATAAA TTTGTTTAAT AGTTTAAATT TGAAAGATCT
TGCATTTCCG GTTATTAGTG TATAACATAA TCTTCGATCT AAACCTCAAA GTCATAGGTC TATGACTTCT TCCGTGTAAA
TTGTTCTTGT TTATGACGTT CCTTTGCTT

>Vigan.08G186700.01
ATGGCTAACC ACACTATGAA GCTGCTCAAC TTGCTTCTTC TCTTAGCCAC CACCGTCTCA TCAGATCCTG ACCTTCTTCA
AGACCTCTGT GTCGCTGACC TCTCCTCAGG TGTGAAAGTG AATGGATTCA GCTGCAAAGA AGCATCTAAG ATAAATGCCT
CAGATTTCTT CTCGAACATA CTAGGAAAAG CAGGATCCAC CAACAACACC TTTGGGTCAA TAGTGACTGG AGCGAATGTT
GAGAAAGTCC CAGGACTGAA CACACTTGGT GTGTCTCTGT CAAGAATTGA CTATGCCCCA GATGGCATAA ACCCTCCTCA
CACTCACCCT CGTGCCACTG AGATTGTCTT TGTGCTTGAA GGCCAACTAG ATGTAGGCTT CATAACCACT TCCAATCTCC
TCATATCAAA GACCATTAGC AAGGGTGACA TATTTGTCTT TCCAAAAGGC TTGCTTCACT TCCAACAGAA CAATGCCAAC
GTCCCTGCTG CTGTCATTTC AGCCTTCAAC AGCCAACTTC CAGGGACACA GTCAATTGCT ACAACCTTGT TTTCTGCCAC
ACCTTCACTT CCCGACCATG TCTTGACCAA GACCTTCCAG GTTGGTACCA AAGTCGTTCA GAAAATCAAG TCCAGGCTTG
CACCTAAGAA GTAA

>Vigan.08G186700.01
MANHTMKLLN LLLLLATTVS SDPDLLQDLC VADLSSGVKV NGFSCKEASK INASDFFSNI LGKAGSTNNT FGSIVTGANV
EKVPGLNTLG VSLSRIDYAP DGINPPHTHP RATEIVFVLE GQLDVGFITT SNLLISKTIS KGDIFVFPKG LLHFQQNNAN
VPAAVISAFN SQLPGTQSIA TTLFSATPSL PDHVLTKTFQ VGTKVVQKIK SRLAPKK*