GBrowse Details

Vigan.08G160500.01

Basic Information:
Name: Vigan.08G160500.01
Multiple alignment
Variant Information
Position: Chr08:14332066..14335452 (- strand)
Length: 3387
Functional Information:
Description: Similar to Uncharacterized protein. [I1LBN5, Glycine max]
InterPro: SS18 family (IPR007726)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.03,41.27,19.10,3.86,59.45,105.03,11.31,7.49
Automatic updates:
Name: NM_001289286 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GRF1-interacting factor 1-like (LOC100812917), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:14332066..14332413 (- strand)
Length: 348
Type: three_prime_UTR
Position: Chr08:14332414..14332806 (- strand)
Length: 393
Type: CDS
Position: Chr08:14332954..14333038 (- strand)
Length: 85
Type: CDS
Position: Chr08:14333853..14333929 (- strand)
Length: 77
Type: CDS
Position: Chr08:14334924..14335004 (- strand)
Length: 81
Type: CDS
Position: Chr08:14335005..14335452 (- strand)
Length: 448
Type: five_prime_UTR

>Vigan.08G160500.01 class=Sequence position=Chr08:14332066..14335452 (- strand)
GACTCTGTTT AGTTGCGAAC AGCAGCATCT TTTATTTTCT CTCTCTGGTC CATCACGTGA GCTACTTTTT GAGAGAGAGA
GAGAGAGAGA GAAGAGAGCA AAGACACGCA GTTCCAGAGA GGGACCCTGT TGCAGAGAAG AAAGAGCCAA ATCAACCAGG
TTCCCTCAAC CTCAACTCTC TCTCTTGCAA TAAATAATAA TATCTTTCTC GGTGTGGTAG CAACATTGTA AATGTAATTG
TAATTGTAAT TGCAAGTGAG AGAGAAGGCA AAAGCGGGAA CAGAGAAAAA CACAGTCTTT TGTTTCTCTT TGCAGTTCCT
TCCTCCTTGC ACTCTCAGCT TGCAGGGGTT GTTTCCCCCT TCCGTTTGAG AGAAAAAAAG AGAGAGAATA GATTTCAATT
TCATCATCTG TATATAAATA GTGGACTTAG TTACTTAGCG TGCGAGAAAT GCAGCAGCAC CTGATGCAGA TGCAGCCCAT
CATGGCAGCC TACTACCCCA ACAACGTCAC CACTGATCAC ATTCAACAGG TCCTTTCCTT TCCTTTCACT CTTCCATTTC
CATTCTCCCT CTCTTTTCCT TCTTCTCCTT TTCTTTTATC TTTCTCAAGC TTCTTTCCAC TTTCCCTTCA CCTGTCTCTG
CTCAGGGAAC CTTTTCTTTT GTGTCTCTGA GCCTGTGGGT CTTACTGTGC CACTTTTAGT ACTACCCCTT GCTTACTCTG
TTTCTCATCA TGCCCTCTTC TCTTTATTCT TTGTCACTTT CTGCTAACAT CTCTGTGAGC CTATCTTAAC GTAATCCCCG
TCTTTGTCAC TTCACGTTCA CCACTTTGCT TGATTCGCTC TGTTCTTATC ATTTATTAAG CTTGACTCCA CTCATTCTTG
GGCCCCTTCA GTATGCCTTT CGTTTTAATT ACTTTTTTTC AAAGAGAGTA ACTGTTCTTT AGTGTCTACA CTGTTCTGGT
GGCACCCCAC TTTGATACTT GCTGTGTTGT TTGCTCCGTT CATGTTTCAA AGTGTTCAAC TTGGACTGCT AGATTCTCTC
ATGTGTTGTC CTTGCAGTTT TGTAGATTGG TACCGCCATG TGTTTAGCTT CTCTGTTTCG GTTTAGTATC TCTATGGTGA
TTTGTGGGAG AGAATGTTGA ACTGTTTCAT GTTGGTTAAA GGGCTTGTTT ACTTTCTTGC ATACAATTAC AGTCCATTGA
AGAAAGTGTT TGATATTAAA GAAAAAATGA CAGGATGGAA ATTGCATGCC AGAAAATGCT CATATTCATA GTCTCAGTCG
ACATAAATAA AAGTCATTAA TATTATGGTA TACATGACTA TTTTTGTACA ATACATTTTA GAAAATATAC TCTAAAATTC
CCTGCATGTT TTCTGAAGTT TACTTTGATT AACATGACGG ATCAACGATG CCTTTTTTTT TGTTTGTTTG CTTCCCCACT
TCACATGTAT TTATGCAATT TGCCCCCTTC GTTTTTGTGA AATTGTCATA TCTGAAATAA CTAGTTTCTC TCTTTACTAG
CAGTATCTGG ATGAAAACAA GTCCCTGATT CTGAAGATTG TTGAAAGCCA GAATTCTGGC AAGCTGAGCG AGTGTGCCGA
GTAAGAACTG GTCTCATTGT AAAACTTTTT CTCAAATCTT TATTATTTGG CAAGCATGAG CCCTTCTGGT TTGGTGTCAT
ATAATAACTG TAAGGAATAG AAACTGGAAC AAGTTCCTAC CTCAATCCCT TTAGTTAATT TCCGTCTTAA TTTTCTGGTC
ATTTGTTCCA CTTGTAATAG CCTAACTCCT CATAGGTTAA CTTTGGGTAT TAGCAGGGTC AAATAGTTCA TGCTAACAAT
GACTTATTCC AAACTTTACT CTCCTAGTTT CTTATCTGAT ACTTTAGCCA CAGTTGCAGA CCGTGTTATA AACTACCTAA
TTAGTCTGAC GATAAAGCTA GGGTGTTCGA AATCTTGAAT CTAAATGGAG TCTGCATTGA CTATGTATCT TTTTGCAGGC
TTTTTCTAAG ATACAGTGTA CCCCACAATA CTTCAAAAAA ATTGGACACC AATAGTTTTA TACAATTTTG AATTGAAGTT
GCAAACATGA TGACTTGAAA CAGAACAGTT GTCACTTTCT GTACATGTAT ATTTCCACAA GGTCAATCAT TAGGAGAAAG
GTTGTAGCCC TTTTTGGTAA TTGCATCATT TCGTGGTTTT CTTGTCAACA CAACTTGAAG GGGACACAGA TACTCAAAGT
AGATCAACTT TTTTCTTGGG ACTGTGGGGG TGTGAAAAAG TTGCTTCAAA GAATCACGGT TCTCCATGTT TGCCTTGTGA
TTGAAACCTA AAACAATTAT TAGATTTTAT GGTTCCTTTA CTGCTCCTTT TGTTGTGGTC CTAAAGCATC ACAATCCTCT
TGTCTTTATT TCAGGAACCA ATCCAGGCTG CAGAGAAATC TGATGTACCT TGCTGCGATA GCTGATTCCC AGCCCCAACC
ACCTCCTATG CCTGGTCAGG TACACAACCA TTTTTTCAGA ATATTTGATT AGCATCGGAA ATCACTTTGA CATGCTAGAT
ACATTTTACA TGCAAAATAC TGCAATGATC CAGTATCATA TACATAATCT TCAGTTAACT TCATATTCTT CTGAATATCA
TTGTAGTATC CTCCCAGTGG AATTATGCAG CAGGGAGCAC ACTACATGCA GGCTCAACAA GCTCAGCAGA TGTCACAACA
ACAGCTAATG GCTTCACGCT CCTCCCTCTT ATACTCTCAA CAACCCTTCT CAGCTCTTCA ACAGCAGCAG GGCTTGCACA
GCCAACTTGG CATGAGCTCC AGCGGAAGTC AAGGCTTTCA CATGATGCAA AGTGAAGCCA CAACTGTAGG GGGCAATGCA
ACCATAGGTT CTGGAGGGTT TCCTGATTTT GTACGCATTG GTAACATTGG CAAGCAAGAT ATTGGAAGCT CTGGTGAAGG
CAGAGGAGGA AGCTCCAGTG GCCACTCTGG TGATGGTGGT GAGACCCTTT ATCTGAAATC TGCAGCTGAT GGAAACTAAA
CCAGCCAGGG AGAATACTGA AGTTTCCTTG GCCTTTAGTG GTTTATTTAG TTAGGAGAAT TAGGCAGTGG ACATTAAGTA
GAGGAAGAAG AAAGGAAAAA CTTGCTGCAC TTGTTGCTTA TATATGTTGT TTGTTTATCT TGTGCTAAAG GCAAACAATC
TAATCACTGC CTTAATGTTT CTGCAGTAGT ACTAGTAGTA ACATGATGCA TGCTTTATTT TCTGGTGTAA AGCTTTAGTC
ATAAATGTCA AGGTCACAAT ATGACCACTT GTTATCGTGA GGGTTATTTG GTTGAACCAT GACTGATGAA AATTTTCCGA
CAAAGTTAAC TCAGAATCCA AACCCAC

>Vigan.08G160500.01
GACTCTGTTT AGTTGCGAAC AGCAGCATCT TTTATTTTCT CTCTCTGGTC CATCACGTGA GCTACTTTTT GAGAGAGAGA
GAGAGAGAGA GAAGAGAGCA AAGACACGCA GTTCCAGAGA GGGACCCTGT TGCAGAGAAG AAAGAGCCAA ATCAACCAGG
TTCCCTCAAC CTCAACTCTC TCTCTTGCAA TAAATAATAA TATCTTTCTC GGTGTGGTAG CAACATTGTA AATGTAATTG
TAATTGTAAT TGCAAGTGAG AGAGAAGGCA AAAGCGGGAA CAGAGAAAAA CACAGTCTTT TGTTTCTCTT TGCAGTTCCT
TCCTCCTTGC ACTCTCAGCT TGCAGGGGTT GTTTCCCCCT TCCGTTTGAG AGAAAAAAAG AGAGAGAATA GATTTCAATT
TCATCATCTG TATATAAATA GTGGACTTAG TTACTTAGCG TGCGAGAAAT GCAGCAGCAC CTGATGCAGA TGCAGCCCAT
CATGGCAGCC TACTACCCCA ACAACGTCAC CACTGATCAC ATTCAACAGT ATCTGGATGA AAACAAGTCC CTGATTCTGA
AGATTGTTGA AAGCCAGAAT TCTGGCAAGC TGAGCGAGTG TGCCGAGAAC CAATCCAGGC TGCAGAGAAA TCTGATGTAC
CTTGCTGCGA TAGCTGATTC CCAGCCCCAA CCACCTCCTA TGCCTGGTCA GTATCCTCCC AGTGGAATTA TGCAGCAGGG
AGCACACTAC ATGCAGGCTC AACAAGCTCA GCAGATGTCA CAACAACAGC TAATGGCTTC ACGCTCCTCC CTCTTATACT
CTCAACAACC CTTCTCAGCT CTTCAACAGC AGCAGGGCTT GCACAGCCAA CTTGGCATGA GCTCCAGCGG AAGTCAAGGC
TTTCACATGA TGCAAAGTGA AGCCACAACT GTAGGGGGCA ATGCAACCAT AGGTTCTGGA GGGTTTCCTG ATTTTGTACG
CATTGGTAAC ATTGGCAAGC AAGATATTGG AAGCTCTGGT GAAGGCAGAG GAGGAAGCTC CAGTGGCCAC TCTGGTGATG
GTGGTGAGAC CCTTTATCTG AAATCTGCAG CTGATGGAAA CTAAACCAGC CAGGGAGAAT ACTGAAGTTT CCTTGGCCTT
TAGTGGTTTA TTTAGTTAGG AGAATTAGGC AGTGGACATT AAGTAGAGGA AGAAGAAAGG AAAAACTTGC TGCACTTGTT
GCTTATATAT GTTGTTTGTT TATCTTGTGC TAAAGGCAAA CAATCTAATC ACTGCCTTAA TGTTTCTGCA GTAGTACTAG
TAGTAACATG ATGCATGCTT TATTTTCTGG TGTAAAGCTT TAGTCATAAA TGTCAAGGTC ACAATATGAC CACTTGTTAT
CGTGAGGGTT ATTTGGTTGA ACCATGACTG ATGAAAATTT TCCGACAAAG TTAACTCAGA ATCCAAACCC AC

>Vigan.08G160500.01
ATGCAGCAGC ACCTGATGCA GATGCAGCCC ATCATGGCAG CCTACTACCC CAACAACGTC ACCACTGATC ACATTCAACA
GTATCTGGAT GAAAACAAGT CCCTGATTCT GAAGATTGTT GAAAGCCAGA ATTCTGGCAA GCTGAGCGAG TGTGCCGAGA
ACCAATCCAG GCTGCAGAGA AATCTGATGT ACCTTGCTGC GATAGCTGAT TCCCAGCCCC AACCACCTCC TATGCCTGGT
CAGTATCCTC CCAGTGGAAT TATGCAGCAG GGAGCACACT ACATGCAGGC TCAACAAGCT CAGCAGATGT CACAACAACA
GCTAATGGCT TCACGCTCCT CCCTCTTATA CTCTCAACAA CCCTTCTCAG CTCTTCAACA GCAGCAGGGC TTGCACAGCC
AACTTGGCAT GAGCTCCAGC GGAAGTCAAG GCTTTCACAT GATGCAAAGT GAAGCCACAA CTGTAGGGGG CAATGCAACC
ATAGGTTCTG GAGGGTTTCC TGATTTTGTA CGCATTGGTA ACATTGGCAA GCAAGATATT GGAAGCTCTG GTGAAGGCAG
AGGAGGAAGC TCCAGTGGCC ACTCTGGTGA TGGTGGTGAG ACCCTTTATC TGAAATCTGC AGCTGATGGA AACTAA

>Vigan.08G160500.01
MQQHLMQMQP IMAAYYPNNV TTDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQSRLQR NLMYLAAIAD SQPQPPPMPG
QYPPSGIMQQ GAHYMQAQQA QQMSQQQLMA SRSSLLYSQQ PFSALQQQQG LHSQLGMSSS GSQGFHMMQS EATTVGGNAT
IGSGGFPDFV RIGNIGKQDI GSSGEGRGGS SSGHSGDGGE TLYLKSAADG N*