GBrowse Details

Vigan.08G157500.01

Basic Information:
Name: Vigan.08G157500.01
Multiple alignment
Variant Information
Position: Chr08:14026626..14030058 (+ strand)
Length: 3433
Functional Information:
Description: Similar to proteoglycan 4. [XP_008388705.1, Malus domestica]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:30.17,25.43,17.87,19.55,25.32,13.88,22.99,18.12
Arabidopsis thaliana homolog: AT3G04560.1
Structure :
Position: Chr08:14026626..14026725 (+ strand)
Length: 100
Type: five_prime_UTR
Position: Chr08:14026726..14026921 (+ strand)
Length: 196
Type: CDS
Position: Chr08:14027729..14028018 (+ strand)
Length: 290
Type: CDS
Position: Chr08:14028128..14028217 (+ strand)
Length: 90
Type: CDS
Position: Chr08:14029046..14029395 (+ strand)
Length: 350
Type: CDS
Position: Chr08:14029474..14029738 (+ strand)
Length: 265
Type: CDS
Position: Chr08:14029739..14030058 (+ strand)
Length: 320
Type: three_prime_UTR

>Vigan.08G157500.01 class=Sequence position=Chr08:14026626..14030058 (+ strand)
TACATTAATC TTACAAGGAT TTGAAGAAGC GTCTTAATAT TTTTTAGTCG CTGAAAGGAA GAGTTTTTGA AGGAGAAGGA
GAGCAAAAAG AGAGATTGTG ATGGCAGACG ATCTGTTTGA AGGATTGCCA CCTCCTTCAT CCAACACTGT TCCTCAACAT
CATCAACCTC AACCAGAACC AATTGCTGTT GCTACCAACA ACGATGACAA GACGGAATCC TCTGCAGTTC CGCCTCCAAA
GCCCATCCTC AAAAGTGCCC TCAAGCGTCC CAACCCTACT GAACCCGACA CCCAAGGTCA ACTTCTTCTT TTCCTTTTAA
TCAGATTTTT GTTTTCGACC TGTTCTTCCA ATTAGGGTTT CTCCAATTCC AACAATTTGT TCCATTTAAC TCGCATAGTG
TTTGTTTTTT TCTTTGACTT TCTCACCTCA ACCCTAAGTT ACGTAGATAG GTTTTCCATT CCTTTTACTT GTTGTCTCTT
CGCTTTTTAT GCTTCAACTA TGGAACCAGT TGAAAGGGCG CCTTTTATCA ACTCTACCTA CGTCCATTTG ACAACATGGG
CGCATGGGAA AAATGTCTAC GTCCATCGTG GTTAGAAGAA TGGATAAAAA TGGTCATTTA GCATTCAATC GAGACTGCAA
AATTCAGCTT CAAGATCCGT TTTCCATGAA TTCTCTGATT TTTCCTTTCA CGCTGTCAAC TTTAATGAGC ATTTACTTGA
TTATATCATA CTTTAGCAGT TCCGTATATT TTTTTTCCAA AAAAAAAAAC TCTATTTGAG CTTGCCTTGG TGTTCCTAAA
CTAAAAGAAA TCTGTCAGGT ATCAAATTGA GCCCTCGCTT GTCTCTTTGG AATGAGGTAA ATGTAAGTTT CTCTATAAAA
GTGCTTTTTG AGACGGAGAT TTTTCTCTAC GTTAAATTGG GTGCCATCCC TTCCCCTTGA GTTTACTTAA CAAAACAAAG
GATAATAATT TTATTGAATT TTGTCTTGGT TTTAAGAATG CTGCTATAAT TGCAGTTATT ATTTTTATAT TTGCTTCCCA
GTTTTAAATG ATGGAGTTGG GATTTTTTTT TTGGAAATTC TGAATCATCT GTTGTAATTT CAGCTGCAGC GCCTAAGAAA
AGCTTGAAAT TCAAAACCAT GACGGATGCT TCTGAAGCTC AAGTTATTGA TGCCATGCAG AAGATATCTT CGCACATCAA
GAACCCTTCA AAATTTAGCA AGGCTGCAAA GCTTGCTGTA CAGCTCATTC AGGCAGGAAG TGTAAAGTCA GAAATTAGTG
ATTATTTTTT TGCTATATTA GAAGCTGCAA TGTCATCATC CATAACTTGT TCAGATCCTT CAGTTCGAGC AGATTACCAT
TGTCTATTCT CAGCAGCTCA AAACGCCAAA GAAGTAAGAT TACCTTTGTG TTGCAGATAT TCATAATTCA TTGTTAGCAA
TTGTATTTTC TCAGCGAGGA TTGCGAAAGA TTTTTTGACT CCGACCTATC CTTTAACTTC AGCACCTCAA TAAGAAGCAA
AAGAATCAAC TGGAAACATG GACAATTAAT GCTGTGGTGG CAAATGATTT ATACACAGAT GACAGCTTTG TGGTATGATT
CTCATTGAAT TCTATGTTGA ACTTGGTGAC AACAACGTTC TTCCTATTTG AGACATGGAG AAGCATATTG GAATGATGTG
CAATTCGTTT GGACATGTAA TGCTGTTCCA ATCATCAAGA TGAATAGTTT TATTTGTGTC CTTTTATTTG TTCATAATTT
CATAATATCC ATGTTCAGTT TTCATTACTT TAATGTAGTT ATCTTCAAAG TTGTCATTTC ACATATCAAT TCGTTAGTTT
TTCATCCACA TAAATTGTGG CAAAAGATGG ATCCAAGTGT CTCAACGTAG TGTTTTGAAT ATTTGCTCTT ACTGGCTGAG
TAAAAATGGA TTTGAAAGGA AAAGGCTTTT GGAGCAATGA TAAGAGTAAT GGTCAAGTAT ATGATATTGA TAAGCACAGT
GATGTCCAAT TCAGCCATCC ACTGTGTTCA CGCTTTCTAT ACTTTGTGAT AGATGCATAA TGGGGCGTGG GAGTTCATTG
GTGCGTGACT AGTTATGTCT CCTCTCGCAT GTTGACACAA ATTCACTCAC GCAGGGGACA AACTATTTTT ATTTTGGGCT
AGTGGGAGTT TGTCTTGGTT GCAATAGCAA TGTTCTTCAT TTAAGTGAAC TGTTGAATTC CCTGACATGG TTCTCTGCTA
GCTAATACTT TGACTTTGTA TATTTTTGGA GGGACTATAG ATGTGTAAAA TTATTTGCAA CGAAAAAATT GTCTGGAATA
TTGTTGTTTA TTATAGATCG TATTCTGTTT ACCAAGAATA ATTAGATCTA TAAACATTAT TTCTTTGTTA CTCATGAACT
GTTTCCTACT TTTTGTGCAG TTTTCTAAAG CAGCTGGGAA AATCAAGGAA ATTATATCTA GTCTTCCTGT TGCAACAGAG
CAGGAGGATG CAGAGGAAGA AAAGTCTCTG AAAGATGGCA CAGTTATAGC AGATGAAGGG GGTAAAACAC CTGCCACGGA
TAATGATAAT GATGGGAAGG AAGCTGACCC ATTTGGACTT GATGCTCTGA TTCCTAATTC CACAAAGAAA GTTGAAAAAC
TAAAGGCAAA GAATGAGGCA ACTGTGGAAA TAAGGGAGGA TGAGGAAGAA ACCAAGAGAT TCCTCAAGTC ACAAAGAGAA
GCCTTGATAA CTTGTTTAGA GATTGCTGCC CGGCGTTATA AGACACCCTG GTAAGTGCTG GTACAGTTTC CTGTTGTATT
GTCTTTTACA CACATTTTAA AATTGCTTGT TATCATTTTT CTATCCAGGT GTCAAACCGT GATTGATATT TTGGTGAAAC
ATGCCTCTGA TAATGTGTCG AGATTTACAG CTAGTCAGAG GGATGCCGTT GGGAAATTGT GGGCTTCAAT ACGGGAACAA
CAAACTCGTA GGAAGCAAGG GAAGTCAGTT AATGGAAAAC TTGATGTAAA TGCTTTTGAA TGGCTTCAAC AAAAATATGC
TAATGAAAAG ATTAGCATTA GGCATTCTGT TGGAGCTAGC GGAGACCGTC GAGCCCAACA ATGGCTTGGT TAAATATTCT
TTTGAGGTCA ATGAAAATGA TAAGGATGAT GATCACTGTA AAACTGTTCA AAGAGTGAAA GAGGATGCGT CCTCGCGAGT
TCATTGAGTG TTGTAACATT AGTAGCTCTC GGACATGTCT CCGGACTGTG ATTTCTTCAG AAAACAATTT GGTAGTAACG
TATAAAATGT GATTTCTTTA TACCCTTTTT ATTTGTGCTG ATATAAGCCA GTTATTTGTT TCAAAACATG CATAGTCTGC
CCAGGCATCT ATCTACATCA ATTTACTCAA ACGATTCGAA TGGACTTTGA TCCCGAAATA GTGTTTGTTG ATA

>Vigan.08G157500.01
TACATTAATC TTACAAGGAT TTGAAGAAGC GTCTTAATAT TTTTTAGTCG CTGAAAGGAA GAGTTTTTGA AGGAGAAGGA
GAGCAAAAAG AGAGATTGTG ATGGCAGACG ATCTGTTTGA AGGATTGCCA CCTCCTTCAT CCAACACTGT TCCTCAACAT
CATCAACCTC AACCAGAACC AATTGCTGTT GCTACCAACA ACGATGACAA GACGGAATCC TCTGCAGTTC CGCCTCCAAA
GCCCATCCTC AAAAGTGCCC TCAAGCGTCC CAACCCTACT GAACCCGACA CCCAAGCTGC AGCGCCTAAG AAAAGCTTGA
AATTCAAAAC CATGACGGAT GCTTCTGAAG CTCAAGTTAT TGATGCCATG CAGAAGATAT CTTCGCACAT CAAGAACCCT
TCAAAATTTA GCAAGGCTGC AAAGCTTGCT GTACAGCTCA TTCAGGCAGG AAGTGTAAAG TCAGAAATTA GTGATTATTT
TTTTGCTATA TTAGAAGCTG CAATGTCATC ATCCATAACT TGTTCAGATC CTTCAGTTCG AGCAGATTAC CATTGTCTAT
TCTCAGCAGC TCAAAACGCC AAAGAACACC TCAATAAGAA GCAAAAGAAT CAACTGGAAA CATGGACAAT TAATGCTGTG
GTGGCAAATG ATTTATACAC AGATGACAGC TTTGTGTTTT CTAAAGCAGC TGGGAAAATC AAGGAAATTA TATCTAGTCT
TCCTGTTGCA ACAGAGCAGG AGGATGCAGA GGAAGAAAAG TCTCTGAAAG ATGGCACAGT TATAGCAGAT GAAGGGGGTA
AAACACCTGC CACGGATAAT GATAATGATG GGAAGGAAGC TGACCCATTT GGACTTGATG CTCTGATTCC TAATTCCACA
AAGAAAGTTG AAAAACTAAA GGCAAAGAAT GAGGCAACTG TGGAAATAAG GGAGGATGAG GAAGAAACCA AGAGATTCCT
CAAGTCACAA AGAGAAGCCT TGATAACTTG TTTAGAGATT GCTGCCCGGC GTTATAAGAC ACCCTGGTGT CAAACCGTGA
TTGATATTTT GGTGAAACAT GCCTCTGATA ATGTGTCGAG ATTTACAGCT AGTCAGAGGG ATGCCGTTGG GAAATTGTGG
GCTTCAATAC GGGAACAACA AACTCGTAGG AAGCAAGGGA AGTCAGTTAA TGGAAAACTT GATGTAAATG CTTTTGAATG
GCTTCAACAA AAATATGCTA ATGAAAAGAT TAGCATTAGG CATTCTGTTG GAGCTAGCGG AGACCGTCGA GCCCAACAAT
GGCTTGGTTA AATATTCTTT TGAGGTCAAT GAAAATGATA AGGATGATGA TCACTGTAAA ACTGTTCAAA GAGTGAAAGA
GGATGCGTCC TCGCGAGTTC ATTGAGTGTT GTAACATTAG TAGCTCTCGG ACATGTCTCC GGACTGTGAT TTCTTCAGAA
AACAATTTGG TAGTAACGTA TAAAATGTGA TTTCTTTATA CCCTTTTTAT TTGTGCTGAT ATAAGCCAGT TATTTGTTTC
AAAACATGCA TAGTCTGCCC AGGCATCTAT CTACATCAAT TTACTCAAAC GATTCGAATG GACTTTGATC CCGAAATAGT
GTTTGTTGAT A

>Vigan.08G157500.01
ATGGCAGACG ATCTGTTTGA AGGATTGCCA CCTCCTTCAT CCAACACTGT TCCTCAACAT CATCAACCTC AACCAGAACC
AATTGCTGTT GCTACCAACA ACGATGACAA GACGGAATCC TCTGCAGTTC CGCCTCCAAA GCCCATCCTC AAAAGTGCCC
TCAAGCGTCC CAACCCTACT GAACCCGACA CCCAAGCTGC AGCGCCTAAG AAAAGCTTGA AATTCAAAAC CATGACGGAT
GCTTCTGAAG CTCAAGTTAT TGATGCCATG CAGAAGATAT CTTCGCACAT CAAGAACCCT TCAAAATTTA GCAAGGCTGC
AAAGCTTGCT GTACAGCTCA TTCAGGCAGG AAGTGTAAAG TCAGAAATTA GTGATTATTT TTTTGCTATA TTAGAAGCTG
CAATGTCATC ATCCATAACT TGTTCAGATC CTTCAGTTCG AGCAGATTAC CATTGTCTAT TCTCAGCAGC TCAAAACGCC
AAAGAACACC TCAATAAGAA GCAAAAGAAT CAACTGGAAA CATGGACAAT TAATGCTGTG GTGGCAAATG ATTTATACAC
AGATGACAGC TTTGTGTTTT CTAAAGCAGC TGGGAAAATC AAGGAAATTA TATCTAGTCT TCCTGTTGCA ACAGAGCAGG
AGGATGCAGA GGAAGAAAAG TCTCTGAAAG ATGGCACAGT TATAGCAGAT GAAGGGGGTA AAACACCTGC CACGGATAAT
GATAATGATG GGAAGGAAGC TGACCCATTT GGACTTGATG CTCTGATTCC TAATTCCACA AAGAAAGTTG AAAAACTAAA
GGCAAAGAAT GAGGCAACTG TGGAAATAAG GGAGGATGAG GAAGAAACCA AGAGATTCCT CAAGTCACAA AGAGAAGCCT
TGATAACTTG TTTAGAGATT GCTGCCCGGC GTTATAAGAC ACCCTGGTGT CAAACCGTGA TTGATATTTT GGTGAAACAT
GCCTCTGATA ATGTGTCGAG ATTTACAGCT AGTCAGAGGG ATGCCGTTGG GAAATTGTGG GCTTCAATAC GGGAACAACA
AACTCGTAGG AAGCAAGGGA AGTCAGTTAA TGGAAAACTT GATGTAAATG CTTTTGAATG GCTTCAACAA AAATATGCTA
ATGAAAAGAT TAGCATTAGG CATTCTGTTG GAGCTAGCGG AGACCGTCGA GCCCAACAAT GGCTTGGTTA A

>Vigan.08G157500.01
MADDLFEGLP PPSSNTVPQH HQPQPEPIAV ATNNDDKTES SAVPPPKPIL KSALKRPNPT EPDTQAAAPK KSLKFKTMTD
ASEAQVIDAM QKISSHIKNP SKFSKAAKLA VQLIQAGSVK SEISDYFFAI LEAAMSSSIT CSDPSVRADY HCLFSAAQNA
KEHLNKKQKN QLETWTINAV VANDLYTDDS FVFSKAAGKI KEIISSLPVA TEQEDAEEEK SLKDGTVIAD EGGKTPATDN
DNDGKEADPF GLDALIPNST KKVEKLKAKN EATVEIREDE EETKRFLKSQ REALITCLEI AARRYKTPWC QTVIDILVKH
ASDNVSRFTA SQRDAVGKLW ASIREQQTRR KQGKSVNGKL DVNAFEWLQQ KYANEKISIR HSVGASGDRR AQQWLG*