VIGGS:GBrowse

Vigan.08G153400.01

Basic Information:

Name:	Vigan.08G153400.01 Multiple alignment Variant Information
Position:	Chr08:13693730..13695962 (- strand)
Length:	2233

Functional Information:

Description:	Similar to Uncharacterized protein. [I1LBW5, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:51.52,14.73,10.73,9.87,7.57,7.34,13.74,9.65
Arabidopsis thaliana homolog:	AT5G47520.1

Automatic updates:

Name:	NM_001255739 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ras-related protein RABA5a-like (LOC100789187), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:13693730..13693965 (- strand)
Length:	236
Type:	three_prime_UTR

Position:	Chr08:13693966..13694300 (- strand)
Length:	335
Type:	CDS

Position:	Chr08:13695378..13695717 (- strand)
Length:	340
Type:	CDS

Position:	Chr08:13695718..13695962 (- strand)
Length:	245
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.08G153400.01 class=Sequence position=Chr08:13693730..13695962 (- strand)
TGTAAACAGT CACTTCATAA GGTAAATCTA TTATATATCC AATATTCCTG TGGAACTGCA ATGTGTGTCA CCGACATTCC
CTTCCTGTCT TTCCCTAATT CTTTGTTAGC AGTTGCTCTT TTGTTTCTGA TCCTTGTTCT CGTCTTAGGT GAAGGTGGCA
TTCTAGTATT GGAATGGGCC AGATTCCGTG ATGATTATAT ATTGTTGATT TGTTTCTACA CACTGGCAAT CCTTAGGTCT
GACAGATGGC TTTACCTAAT GAAGAAGAGA AGACTGAGGA CTACCTTTTC AAGATTGTTT TAATTGGTGA TTCAGCTGTT
GGGAAATCAA ATTTACTTGC ACGATTTGCC AGGGATGAGT TTTATCCTAA TTCGAAGTCA ACTATAGGAG TAGAGTTTCA
AACTCAAAAG ATGGATATTA ATGGAAAGGA AGTTAAAGCA CAGATATGGG ACACTGCTGG GCAGGAGAGG TTCAGAGCTG
TTACATCTGC ATATTATAGG GGTGCAGTTG GAGCTCTTCT GGTGTATGAC ATCAGCCGGC GCCAAACATT TGATAGCATA
GGCCGATGGC TTAATGAACT CCACAGTAAG AATTACAATT GTCTGGTCCC TTTTTTTCCA TGAAGTTTTT CTCATGCTTA
TTTTCTTTGT GAGGTTTCAA ATTTAGGAAA TTTTTAACTT GTCCTTCAAT TTGTCTTTGT AAAATGTTTT TGGTTAAGAT
TATTTTTACC GACTTCAGCT TGTTTTGGGA TAAAAATGTT TACAATTTCA GTTGTATGTT TGGAACAATG ACTGAAATTT
TTAAAATTCT GAAAAATAAG TTTATCTTTA TGAATCTGAA AATTAGTAGT TTATGATTTT TCAAACCCTT TTCCCTTTTC
TTCTGTAACA GTTTATATTT TATAGGTTCC AAACGAAATT AACTATTTTA AAACCATTTT TCAGTAATCT TATAAAAAAA
TGGATTCTGA TTATAGTCCA TTAAGCTATC TCAAAGACCA CCCCTAATGA CTATTTTTCT TTGTTGTACT GAGGTTAGAA
TCTACCACAT TTACATAATG ATACCATCCA CACCCCCTTC TCCCACTAGG CTAACCCTAG TGGGTTATGG CTTATCGGTA
CTTAATATGA TCCTGCCGGT AAAAGAACAA TGTTATAGTC TTTATTCTTT CTTAAACGTG ATTATGTTTC ATTAGTTGAC
AAAACATTAC CATGTTGGAT GTATCATGTG GATGCTAAAT TCTGAGTTAA TTGTTTTATT TTTTCTCTTT TCTGCTTTGA
ATCTTTGCTA GTCTTGATCT TTTTTTTATA TTAAAGTAGA TATAGGATAC TTACATAAAT CTGCACCTTG TAATAAACAT
GGTTTAATTA ATTAGTAAAA AAGGTCATTT TTTATTTAGG TATGTTTGGA AAAAGATTAT CTCAAAGTAC TTAGAAATGA
AAATGACAAT AAGTTCCTTA ACATAAAAAA TAACTTGTAC ATAAATAGAA AGAAAAAGCC AAGTGAAATA AGTGTTAACG
GATAAGTTTA GTCGTGAGTA TATTGATAGG CCACTTGGTT TTTATTTTTT CTTGCTACAA AAACATATTG TAGTCACATG
TTTTGATTGC CCATGTGATC AAACAAGGAT TAAATGGAGT GTGGTTTTTT ATTATTTAAC AGCTCACTCA GACATGAACG
TTGTCACAAT ACTTGTTGGG AACAAGTCAG ATCTTAAAGA TGCAAGGGAA GTGGCTACAG CTGAAGGCAA ATCCTTGGCT
GAGGCACAGG GTTTGTTCTT CATGGAGACA TCAGCTCTGG ATTCATCAAA TGTAGCAGCT GCTTTTGAAA CCGTTGTAAA
GGAGATCTAC AACATCTTAA GTCGGAAGGT TATGATGTCT CAAGAGCTCA ACAAATCGGA TGTCTCCCAT ATTGAAAATG
GAAAGACTGT TGTTCTACAA GGGGAAGGTG AACAAGAAGC AGCAGCAGAT GCTGAGCCAG CAAAAGGTTG TTGTTGATCT
TAGGTTTTGA TAATATGTCG GCTCCAAAAC TGAGTTTTTA TTATAATTAT TCGACAAATC ATGAAAATGT AACTCAGATA
TTCAAGATTT ATCTTTAAAT GCTTACTGGG AGATTTTGGA GTAGAAATTC TCTTTGCATT GGAAGAATTA CATAAATGAG
AAAAAGAAAT GATAACAAGT AGCATTAAAA TGACCAAATT TCCTTTTATT TTACGCATGC TTGCAAAACC ACG

[show][hide][copy]TRANSCRIPT

>Vigan.08G153400.01
TGTAAACAGT CACTTCATAA GGTAAATCTA TTATATATCC AATATTCCTG TGGAACTGCA ATGTGTGTCA CCGACATTCC
CTTCCTGTCT TTCCCTAATT CTTTGTTAGC AGTTGCTCTT TTGTTTCTGA TCCTTGTTCT CGTCTTAGGT GAAGGTGGCA
TTCTAGTATT GGAATGGGCC AGATTCCGTG ATGATTATAT ATTGTTGATT TGTTTCTACA CACTGGCAAT CCTTAGGTCT
GACAGATGGC TTTACCTAAT GAAGAAGAGA AGACTGAGGA CTACCTTTTC AAGATTGTTT TAATTGGTGA TTCAGCTGTT
GGGAAATCAA ATTTACTTGC ACGATTTGCC AGGGATGAGT TTTATCCTAA TTCGAAGTCA ACTATAGGAG TAGAGTTTCA
AACTCAAAAG ATGGATATTA ATGGAAAGGA AGTTAAAGCA CAGATATGGG ACACTGCTGG GCAGGAGAGG TTCAGAGCTG
TTACATCTGC ATATTATAGG GGTGCAGTTG GAGCTCTTCT GGTGTATGAC ATCAGCCGGC GCCAAACATT TGATAGCATA
GGCCGATGGC TTAATGAACT CCACACTCAC TCAGACATGA ACGTTGTCAC AATACTTGTT GGGAACAAGT CAGATCTTAA
AGATGCAAGG GAAGTGGCTA CAGCTGAAGG CAAATCCTTG GCTGAGGCAC AGGGTTTGTT CTTCATGGAG ACATCAGCTC
TGGATTCATC AAATGTAGCA GCTGCTTTTG AAACCGTTGT AAAGGAGATC TACAACATCT TAAGTCGGAA GGTTATGATG
TCTCAAGAGC TCAACAAATC GGATGTCTCC CATATTGAAA ATGGAAAGAC TGTTGTTCTA CAAGGGGAAG GTGAACAAGA
AGCAGCAGCA GATGCTGAGC CAGCAAAAGG TTGTTGTTGA TCTTAGGTTT TGATAATATG TCGGCTCCAA AACTGAGTTT
TTATTATAAT TATTCGACAA ATCATGAAAA TGTAACTCAG ATATTCAAGA TTTATCTTTA AATGCTTACT GGGAGATTTT
GGAGTAGAAA TTCTCTTTGC ATTGGAAGAA TTACATAAAT GAGAAAAAGA AATGATAACA AGTAGCATTA AAATGACCAA
ATTTCCTTTT ATTTTACGCA TGCTTGCAAA ACCACG

[show][hide][copy]CDS

>Vigan.08G153400.01
ATGGCTTTAC CTAATGAAGA AGAGAAGACT GAGGACTACC TTTTCAAGAT TGTTTTAATT GGTGATTCAG CTGTTGGGAA
ATCAAATTTA CTTGCACGAT TTGCCAGGGA TGAGTTTTAT CCTAATTCGA AGTCAACTAT AGGAGTAGAG TTTCAAACTC
AAAAGATGGA TATTAATGGA AAGGAAGTTA AAGCACAGAT ATGGGACACT GCTGGGCAGG AGAGGTTCAG AGCTGTTACA
TCTGCATATT ATAGGGGTGC AGTTGGAGCT CTTCTGGTGT ATGACATCAG CCGGCGCCAA ACATTTGATA GCATAGGCCG
ATGGCTTAAT GAACTCCACA CTCACTCAGA CATGAACGTT GTCACAATAC TTGTTGGGAA CAAGTCAGAT CTTAAAGATG
CAAGGGAAGT GGCTACAGCT GAAGGCAAAT CCTTGGCTGA GGCACAGGGT TTGTTCTTCA TGGAGACATC AGCTCTGGAT
TCATCAAATG TAGCAGCTGC TTTTGAAACC GTTGTAAAGG AGATCTACAA CATCTTAAGT CGGAAGGTTA TGATGTCTCA
AGAGCTCAAC AAATCGGATG TCTCCCATAT TGAAAATGGA AAGACTGTTG TTCTACAAGG GGAAGGTGAA CAAGAAGCAG
CAGCAGATGC TGAGCCAGCA AAAGGTTGTT GTTGA

[show][hide][copy]PROTEIN

>Vigan.08G153400.01
MALPNEEEKT EDYLFKIVLI GDSAVGKSNL LARFARDEFY PNSKSTIGVE FQTQKMDING KEVKAQIWDT AGQERFRAVT
SAYYRGAVGA LLVYDISRRQ TFDSIGRWLN ELHTHSDMNV VTILVGNKSD LKDAREVATA EGKSLAEAQG LFFMETSALD
SSNVAAAFET VVKEIYNILS RKVMMSQELN KSDVSHIENG KTVVLQGEGE QEAAADAEPA KGCC*