GBrowse Details

Vigan.08G145900.01

Basic Information:
Name: Vigan.08G145900.01
Multiple alignment
Variant Information
Position: Chr08:12977076..12981362 (- strand)
Length: 4287
Functional Information:
Description: Similar to uncharacterized protein. [C6T5T8, Glycine max]
GO: Biological Process: intracellular protein transport (GO:0006886)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, SAR1-type (IPR006687)
Small GTPase superfamily, ARF/SAR type (IPR006689)
Small GTPase superfamily, ARF type (IPR024156)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:27.74,16.40,26.91,20.49,30.97,33.08,35.36,24.40
Arabidopsis thaliana homolog: AT3G22950.1
Automatic updates:
Name: NM_001248024 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526848 (LOC100526848), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248561 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527908 (LOC100527908), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:12977076..12977296 (- strand)
Length: 221
Type: three_prime_UTR
Position: Chr08:12977297..12977656 (- strand)
Length: 360
Type: CDS
Position: Chr08:12980883..12981074 (- strand)
Length: 192
Type: CDS
Position: Chr08:12981075..12981362 (- strand)
Length: 288
Type: five_prime_UTR

>Vigan.08G145900.01 class=Sequence position=Chr08:12977076..12981362 (- strand)
TGAAAAGTAA AAAAAGAAAA AATACAAAAC AAAATTGAAA ATTCCAAGTT GGGGCTCTCA CGATTTCAAT TTCCCTTTCT
TCCACGGACT CCGATTCTCC TTGTAAACAG GAGTGCCAGG TTCGATCTTT TCGTTCTATG ATGGTTAATG TATTTTGCAC
GTGATATCGA TCTGTTAACT GTATAATTGA CCCAACGCAA GTTTGATCGA AAATCTGATT TTCAGATACT TCGTGTTCCC
GGGTTTGTCT GTTGATTGTA TAGGATTTCT TTAAGAAGTA CATAGAGGAT GGGGGCATTG ATGTCGAGGT TCTGGTTCAT
GTTATTCCCT GCAAAAGAGT ATAAGATTGT TGTTGTTGGA TTAGATAACG CTGGAAAAAC CACCACCCTT TACAAATTGC
ATCTGGGTGA GGTTGTAACT ACCAATCCTA CTGTTGGTAG CAACGTCGAA GAGCTCGTTT ACAAGAATAT ACGATTTGAG
GTCCGTTCAC CCAACTCTTG TTTATTTTAT TCATGCATTT TGTTTCATCG TGTTGATCTT GCTAGGAGGG TTTCATGTTA
TCTTTGTTGT TGCCTAATAT ATGTATGTGT GTGAGGGCTT GTCTCTGCTT ACTTTGTTAT TAATCTTATT AGTAAATCAT
AGGCTCTAAG TAGATAAATT TGCCAGCACT CCAATTTAAT TATCTAGAGG ATTCGACTAT AATAGAAAAA TTAAAAAATT
AGCCATTTGA CTTCACCACA ATGACTGTTA GTGTTCCATA TGATTCTGTG TACTTGGACC GGACATACAA CTTTGTCCTG
CTTCTATTTT CTAATGTGTT TGGGTGAGAT GTGTCAGAAA GGACGCGTTT GGGTGATTTC TTGCAAACTT GATTTTGAAC
GACCTAGATT TTGTAAAATT GATTTTGTTA AAAGTAATTT TGAAATTATT TTGTTAAAAA AGAATGTTTG ATAAAAATCA
CTTTTAGATG TGTAATTATA CAACATCAAC AACAACTAAG CCTTCTCCCA TTGCATTGAG TTGGCTTGCA CCATAAAGTT
CTGTCATTAT GGAGTGGAAA GACAGGCAAT TTACCTCTAA ATGTATCCCA ATGGTTTGAT TTGTAAATTT CTTCATACCT
TTAAGCTTTG GGTTATCTTG CATGAGCGGT CAACTGCCTC CTCATGTACC CAAACTATCA AAGACAAAGT TTTACCAATT
TTTCTGCTCT GGGAGGTCTC TACTTTCTCT CTATTGATTG TGCTCATTCT CAATCTTGTC TGGAGTGACC TCTCATTCGT
TGTAGCATTC TCATTTTCCA CCATTAAACT TGCCAACCCT TCTTGATGTT GACATATAAA GGCTATTACA CTATGAGCAT
TGGGTTATCT TGCATGAGCG GTCAACGGCC TCCTCATGTG CCCAAACCAT CAAAGATAAA ATTTTGCCAA TTTGTCTGTT
CTGGGAGGTC TCTCTACTTT CTCTCTATTG ATTGAGATCA TTCTCAATCT TGTCTTGAGT GACCTCTCAT TCGTTGTAGC
ATTCTCATTT TCCGCCATTA AACTTGCCAA CCCTTCTTGA TATTGACGTA AAAAGGCTAT TACACTATGC TTACATGCAA
GGAATACTAT TATTAAGGAT GGATATGAAC GGATTCGAGA GGATGAGTTG AGTTTGTTTA AGCTGATTTT CAGGGATTTG
AAAAGAAAAA GTTGTAGCCC CCTTGCTTTA GCTCTCTGCA GATTCAAGAG ATTTGTAGGG ATAGCCACAT TAGAAGGTGG
CCATGAGAGA GAAAGAAGAA GTGAGAACTT TCACTTTAGG CGAAAATGCA ACATAATAGA CTATGTTTAA TCGATTATGT
ATTTTGTTGC ATACATAATC AATTATGTTA CTAAAACAAA AAGTGTATTC TGTATACATC AACTATTCTG TATGCATAGT
TGACGTATAA CGGCTATTAC ACTATGCTTA CATGCAAGGA ATACTATTAT TAAGGATGGA TATGAACGGA TTCGAGAGGA
TGAGTTGAGT TTGTTTAAGC TGATTTTCAG GGATTTGAAA AGAAAGAGTT GTAGCTCCCC TTTCTTTAGC TCTCTGCAGA
TTGAAGAGAT TTGTAGGGAT AGCCACATTA GAAGGTGGTC ATGAGAGAGA AAGAAGAAGT GAAAACCTTC ACTTTAGGCG
AAAATGCAAC ATAATAGACT ATGTTTAATC GATTATGTAT TTTGTTGCAT ACATAATCAA TTATGTTACT AAAACAAAAA
GTGTATTCTG TATACATCAA CTATTCTGTA TGCATAGTTG ACGTATAACG GCTATACACT ATGCTTACAT GCAAGGAATA
CTATTATTAA GGATGGATAT GAACGTATTC GAGAGGATGA GTTGAGTTTG TTTAAGCTGA TTTTCAGGGA TTTGAAAAGA
AAGAGTTGTA GCTCCCCTTT CTTTAGCTCT CTGCGGATTG AAGAGATTTG TAGGGATAGC CACATTAGAA GGTGGTCATG
AGAGAGAAAG AAGAAGTGAA AACCTTCACT TTAGGCGAAA ATGCAACATA ATAGACTATG TTTAATCGAT TATGTATTTT
GTTGCATACA TAATCAATTA TGTTACTAAA ACAAAAAGTG TATTCTGTAT GCATAATTGA TTGATTATGA GACATCCTTA
ATTTAAAATG GGTGTTTTTT TCACTTTTTA ACAGTAAGTA ATCAAAAAAT AATATTAAAA ATAATAAATA AAATTATTAA
TGGCAAATAA AATCATCTTA CATTTTCACT CATTTCATTT CCACTTTCTT TCAACTCATC CAAATAACCT TACTTTCCTC
TAATTCTCTT TCTTTTTTTC ACTCCACTTT CTTTCACACC ATTTAAACGA AGGCTTAAAG TAAAATACTT ATATTGAATT
ATGGAGCGAA GGGTTTTGCT TTTCACTGTG AAAGTGACAT GTCAAAACTG TGGTTTGAAG GGCAAAATTG AGTGCTTACA
GTTTTGCCGT AAGTGTTGGG ACAGTGAACA ACATGTGTTT GCGTCCACTG AAATAGCTTT TATGGATGTC AACATTTTTC
CAAATGCTGG CTGATGCTTG GCTGCTTTGA TTATTTACAA GCTCCAACCA CAATTTGGCA TTTGATGATT AAGGACCGTA
GTTGTTTCTT TATGAGCGCC ATGTGTTTGT GTCCACTGAA ATAGCTTTTA TGGATGTCAA CGTTTTTCCA AATGCTGGTT
GATGCTTGGC TGCTTTGATT CTCTACAAGC TCCAACCACA ATTTGGCATT TGATGATTAA GGAGGCTAGT TGTTTCTTTA
TGAGCGCCAT GTGTTTGCGT CCACTGAAAT AGCTTTTATG GATGTCAACA TGTTTTCAAA TGCTGGCTGA TGCTTGACTG
TTTTGATTCT TTACAAACTC CAACCACAAT TTAGCATTTG ATGATTAAGG ACGCTAGTTG TTTCTTTATA AACACTGGAT
AATCACATAA ATTAACGTAG TCTTTGCTTT CTCTTTGTAA CAAGTGATTG GGGGGAGTGC AATAGCATTT ATTTCCACTT
CTTTTGGTTT TTGCGCGGGC CATCATTTTA AACCTTTGCT ATCTTCTTTC CTTCCTGGTG AAAGGATGGA TATGGTTTTG
ATAGCAATCC ACATTAATGT TTTTAAACTA CATTTTGTTG AATATTCTAA TTTTTACTAC TGAGTAGGTT GAAGCATTAC
TTACTCCACG TTGTCATTCA TTTCAGGTCT GGGATCTTGG TGGACAAGAA AGACTGAGGA CATCATGGGC AACATATTAC
CGAGGAACTC ATGCTGTTAT TGCGGTGATA GACAGCAGTG ATAGAGCCAG GATCTCTGTC ATGAAGGATG AACTTTTTAG
GTTGCTGGGG CACGAAGATT TGCAACATTC TGTCGTTCTT GTCTTTGCTA ATAAACAAGA TATCAAGGAT GCTATGACTC
CTGCTGAGAT CACTGATGCA TTATCTCTTC ACAGTATCAA GGATCATGAT TGGCATATAC AGGCTTGTTG TGCCCTCACT
GGAGAAGGGC TCTATGATGG TCTTGGATGG ATTGCCCAGC GAGTAACTGG CAAAGCCCCA ACATGATGTA GGGCTGCGGG
AATCCTGAGA TATTCATTTT TCATGTATTG AATTTATATG ACGAGGGACA AAACTCTTAT GTATCATTTA TACTTCAAAG
AGTCAAACAA AGATAATGTG TTTGATTTGC TATGATATGA AGAGAAAGGT TATTCAATAA TCTGATTAAG ACACGTTAAT
TCTCAATCAA GTTTATTATT CAGGTGAGAG GAATACATGA AAGGAGT

>Vigan.08G145900.01
TGAAAAGTAA AAAAAGAAAA AATACAAAAC AAAATTGAAA ATTCCAAGTT GGGGCTCTCA CGATTTCAAT TTCCCTTTCT
TCCACGGACT CCGATTCTCC TTGTAAACAG GAGTGCCAGG TTCGATCTTT TCGTTCTATG ATGGTTAATG TATTTTGCAC
GTGATATCGA TCTGTTAACT GTATAATTGA CCCAACGCAA GTTTGATCGA AAATCTGATT TTCAGATACT TCGTGTTCCC
GGGTTTGTCT GTTGATTGTA TAGGATTTCT TTAAGAAGTA CATAGAGGAT GGGGGCATTG ATGTCGAGGT TCTGGTTCAT
GTTATTCCCT GCAAAAGAGT ATAAGATTGT TGTTGTTGGA TTAGATAACG CTGGAAAAAC CACCACCCTT TACAAATTGC
ATCTGGGTGA GGTTGTAACT ACCAATCCTA CTGTTGGTAG CAACGTCGAA GAGCTCGTTT ACAAGAATAT ACGATTTGAG
GTCTGGGATC TTGGTGGACA AGAAAGACTG AGGACATCAT GGGCAACATA TTACCGAGGA ACTCATGCTG TTATTGCGGT
GATAGACAGC AGTGATAGAG CCAGGATCTC TGTCATGAAG GATGAACTTT TTAGGTTGCT GGGGCACGAA GATTTGCAAC
ATTCTGTCGT TCTTGTCTTT GCTAATAAAC AAGATATCAA GGATGCTATG ACTCCTGCTG AGATCACTGA TGCATTATCT
CTTCACAGTA TCAAGGATCA TGATTGGCAT ATACAGGCTT GTTGTGCCCT CACTGGAGAA GGGCTCTATG ATGGTCTTGG
ATGGATTGCC CAGCGAGTAA CTGGCAAAGC CCCAACATGA TGTAGGGCTG CGGGAATCCT GAGATATTCA TTTTTCATGT
ATTGAATTTA TATGACGAGG GACAAAACTC TTATGTATCA TTTATACTTC AAAGAGTCAA ACAAAGATAA TGTGTTTGAT
TTGCTATGAT ATGAAGAGAA AGGTTATTCA ATAATCTGAT TAAGACACGT TAATTCTCAA TCAAGTTTAT TATTCAGGTG
AGAGGAATAC ATGAAAGGAG T

>Vigan.08G145900.01
ATGGGGGCAT TGATGTCGAG GTTCTGGTTC ATGTTATTCC CTGCAAAAGA GTATAAGATT GTTGTTGTTG GATTAGATAA
CGCTGGAAAA ACCACCACCC TTTACAAATT GCATCTGGGT GAGGTTGTAA CTACCAATCC TACTGTTGGT AGCAACGTCG
AAGAGCTCGT TTACAAGAAT ATACGATTTG AGGTCTGGGA TCTTGGTGGA CAAGAAAGAC TGAGGACATC ATGGGCAACA
TATTACCGAG GAACTCATGC TGTTATTGCG GTGATAGACA GCAGTGATAG AGCCAGGATC TCTGTCATGA AGGATGAACT
TTTTAGGTTG CTGGGGCACG AAGATTTGCA ACATTCTGTC GTTCTTGTCT TTGCTAATAA ACAAGATATC AAGGATGCTA
TGACTCCTGC TGAGATCACT GATGCATTAT CTCTTCACAG TATCAAGGAT CATGATTGGC ATATACAGGC TTGTTGTGCC
CTCACTGGAG AAGGGCTCTA TGATGGTCTT GGATGGATTG CCCAGCGAGT AACTGGCAAA GCCCCAACAT GA

>Vigan.08G145900.01
MGALMSRFWF MLFPAKEYKI VVVGLDNAGK TTTLYKLHLG EVVTTNPTVG SNVEELVYKN IRFEVWDLGG QERLRTSWAT
YYRGTHAVIA VIDSSDRARI SVMKDELFRL LGHEDLQHSV VLVFANKQDI KDAMTPAEIT DALSLHSIKD HDWHIQACCA
LTGEGLYDGL GWIAQRVTGK APT*