GBrowse Details

Vigan.08G143200.01

Basic Information:
Name: Vigan.08G143200.01
Multiple alignment
Variant Information
Position: Chr08:12657896..12660309 (- strand)
Length: 2414
Functional Information:
Description: Similar to Uncharacterized protein. [Q9XIU8, Glycine max]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
InterPro: SANT/Myb domain (IPR001005)
Homeodomain-like (IPR009057)
Myb domain (IPR017930)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.04,2.38,0.28,12.07,6.76,14.34,1.63
Arabidopsis thaliana homolog: AT3G23250.1
Automatic updates:
Name: KT031207 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_36 MYB/HD-like transcription factor (Glyma20g35180.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: NM_001254089 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MYB/HD-like transcription factor (GMMYB29B2), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:12657896..12658299 (- strand)
Length: 404
Type: three_prime_UTR
Position: Chr08:12658300..12658825 (- strand)
Length: 526
Type: CDS
Position: Chr08:12659612..12659741 (- strand)
Length: 130
Type: CDS
Position: Chr08:12659918..12660050 (- strand)
Length: 133
Type: CDS
Position: Chr08:12660051..12660309 (- strand)
Length: 259
Type: five_prime_UTR

>Vigan.08G143200.01 class=Sequence position=Chr08:12657896..12660309 (- strand)
AAGGAAACCT CTTTCGCGGA AACTGCTAAA TGGTTTGAAT ATGGAAATTT GTTTTTCCTA TTGTTGGACC ATTCTGGTCA
TGGCGTGCGG AGTATCCAAG GATAAATAGC CAGCGAGAGT CTTTGGAAAC GAAGTTGAAG GAGAGAGAAA AGAACTAGTT
TGCTAGTGAG ACTAGCACAT ACTATAGTAC TACTCTACTA CTCCATCAAT TTCTTCATCT TCCGTTTTAT ATTATTGCCA
TCAAAACAAT ACCACAAACA TGGTCCGAGC TCCTTGTTGT GAAAAGATGG GATTGAAGAA GGGTCCTTGG GCTCCCGAGG
AAGATCAAAT CCTCACTTCT TACATCCAAA AACATGGCCA TGGCAATTGG CGTGCCCTCC CAAAACAAGC AGGTAAACAT
TATTCACCAT ACTTTTTAAC ACTTTCTGCT TCATGCTTTA CAAACCTTAA TGAATATGTA TATATATATA TATATATATA
TATATATATA TATATATATA TATATATATA TATATATATA TATATCTTTC CAGTTTTTTC TTCTAATTCC TATGACCATT
TTGCTCAGGC CTGTTAAGAT GTGGAAAAAG TTGCAGACTG CGATGGATTA ACTATTTGAA GCCTGATATC AAGAGAGGGA
ATTTCACATC TGAAGAAGAA GAAACTATCA TTAAGCTGCA TGAGATGCTG GGTAACAGGT ATTCATTGAT CATTTCCTAT
CTTGGACCCA TACATGACAT TAATCATGCT AATTTAACTT CCCAGCAAAA AGCATATCAT GACAAAAACA TCATGCACAT
GTCTGCCATC CAATTCCTAG TTTACACGTC ACGCTGCTCA ATCATTTTGA TCTTTTTAAT TTGCTCAAAT CATGATATAT
GTGCGGTTTT TCCAAAGTTT CTCCCATGGA TAAACAAGGT TGATCAAGTG GTGGGGGCCG GAGGCAATTA TTGTCAACTT
GGGTGAAAAT TAAAATGTAA TAAAGGCTGT GTTAATTAAT TAGTATTTAT TTCATAATGG GGAGTCGAGT ATTGTGTGAG
AAAATCGAGG TATACGATCC CACCTTTGAC GGTGCAAGTG ATCACAGAAA GAGTGTTATG ATAGATATGC AATTATATAT
AAGTAATTAA TTTCGTAAAC CCAGATGTTA AAAGAAAGAG AGTATTGAAA TACAAAACTA TAGTCTATTA AACATCGAAA
CCAAAAGTGA AAAAAACAAA AAGTGGGGCT GCCATGGAAA GAATCTCTGA TTAGATCTGC CACGCACGAA ACAAATTGCC
GTGGCAGTTT ATGGCACATG CAATTATGAC ATGTGTTAGA CGTAAATACC AATATGAGCA TGAGATTCAT TGTCCGTGTA
CTATAGAATT AGGACAACAT CAATGTTTGT TGTTTACCGA TTCACTAGAA AAAACAAAGT GAACGCGAAT CTCGTGCAAT
AATTTCTCGA ATATAATATT AACCGTGTTG ATCCTTATTT TCAGGTGGTC GGCAATTGCA GCAAAATTGC CCGGAAGAAC
TGACAACGAA ATAAAAAATG TGTGGCACAC CAATTTGAAG AAGAGGTTGC TGAATTCAAA TTCCAGAAGA GTCACAAAGC
CAAAAATCAA ACGTTCTGAT TCCAATTCCA GCATCATAAC TGAATCAGAA GCTGCCAATT TTAATTTCAG AGAAATGGAT
TCAACATCTG CCTGCACCAC TTCTAGTGAT TTTTCATCGG TCACAGTTGG TGAAAGCAAA AATATCAAGT GTGAAGACAT
AGAGTCTCTA GAGACAATGC CCGTGATTGA CGAGAGTTTT TGGTCAGAAC CTGCAATTGA TGAAGCACCC TCCATGTCAT
CACAATCCAT GACAATCTCA AATCAGATGC CATTTCAATA CCCTTTTACT AACTATGAGG AAACTTTCCC GCAGAGTCAT
GCTTATGATT CAAACTTTGA TGACGGCATG GATTTCTGGT ATGACATATT CACCAGGACT GCCGATTCCA CAGAATTGCC
AGAGTTCTGA AATTTTCAAA TGTCACGTTC GAAGAGGGTA TTATTAAATT TACCGGATAA TACTGTTCAA ATGAAAGGGT
AACTTCAATT TGACCGTTGC AACAAAAGGG TACCATAATT TCGGCTGTGG GGACGCCATT ATCGCCGGCT GCAAGATCTT
GGAGTCATCC ATTGACAAAG AAACCAGCCA GAGTAATGGG AAAGGCTAAT GTTCTGTAAT GTATGTACAC ATGTAATCTA
CTTGTCAAAC ACTGACTTTA CTTTTTTTAG TGGAAAACAC CAATCTTCTA ACATTTTTGT ATTTTACGAA TTAGTGTTTA
ATCAGGCCAG AGCTTTTTGA TTGTAATATC AATAAATGAT GTCCTAAACG TTATTATTCA AAAATCCATG CCCCTTGTTG
AGTTTTACTG TCCA

>Vigan.08G143200.01
AAGGAAACCT CTTTCGCGGA AACTGCTAAA TGGTTTGAAT ATGGAAATTT GTTTTTCCTA TTGTTGGACC ATTCTGGTCA
TGGCGTGCGG AGTATCCAAG GATAAATAGC CAGCGAGAGT CTTTGGAAAC GAAGTTGAAG GAGAGAGAAA AGAACTAGTT
TGCTAGTGAG ACTAGCACAT ACTATAGTAC TACTCTACTA CTCCATCAAT TTCTTCATCT TCCGTTTTAT ATTATTGCCA
TCAAAACAAT ACCACAAACA TGGTCCGAGC TCCTTGTTGT GAAAAGATGG GATTGAAGAA GGGTCCTTGG GCTCCCGAGG
AAGATCAAAT CCTCACTTCT TACATCCAAA AACATGGCCA TGGCAATTGG CGTGCCCTCC CAAAACAAGC AGGCCTGTTA
AGATGTGGAA AAAGTTGCAG ACTGCGATGG ATTAACTATT TGAAGCCTGA TATCAAGAGA GGGAATTTCA CATCTGAAGA
AGAAGAAACT ATCATTAAGC TGCATGAGAT GCTGGGTAAC AGGTGGTCGG CAATTGCAGC AAAATTGCCC GGAAGAACTG
ACAACGAAAT AAAAAATGTG TGGCACACCA ATTTGAAGAA GAGGTTGCTG AATTCAAATT CCAGAAGAGT CACAAAGCCA
AAAATCAAAC GTTCTGATTC CAATTCCAGC ATCATAACTG AATCAGAAGC TGCCAATTTT AATTTCAGAG AAATGGATTC
AACATCTGCC TGCACCACTT CTAGTGATTT TTCATCGGTC ACAGTTGGTG AAAGCAAAAA TATCAAGTGT GAAGACATAG
AGTCTCTAGA GACAATGCCC GTGATTGACG AGAGTTTTTG GTCAGAACCT GCAATTGATG AAGCACCCTC CATGTCATCA
CAATCCATGA CAATCTCAAA TCAGATGCCA TTTCAATACC CTTTTACTAA CTATGAGGAA ACTTTCCCGC AGAGTCATGC
TTATGATTCA AACTTTGATG ACGGCATGGA TTTCTGGTAT GACATATTCA CCAGGACTGC CGATTCCACA GAATTGCCAG
AGTTCTGAAA TTTTCAAATG TCACGTTCGA AGAGGGTATT ATTAAATTTA CCGGATAATA CTGTTCAAAT GAAAGGGTAA
CTTCAATTTG ACCGTTGCAA CAAAAGGGTA CCATAATTTC GGCTGTGGGG ACGCCATTAT CGCCGGCTGC AAGATCTTGG
AGTCATCCAT TGACAAAGAA ACCAGCCAGA GTAATGGGAA AGGCTAATGT TCTGTAATGT ATGTACACAT GTAATCTACT
TGTCAAACAC TGACTTTACT TTTTTTAGTG GAAAACACCA ATCTTCTAAC ATTTTTGTAT TTTACGAATT AGTGTTTAAT
CAGGCCAGAG CTTTTTGATT GTAATATCAA TAAATGATGT CCTAAACGTT ATTATTCAAA AATCCATGCC CCTTGTTGAG
TTTTACTGTC CA

>Vigan.08G143200.01
ATGGTCCGAG CTCCTTGTTG TGAAAAGATG GGATTGAAGA AGGGTCCTTG GGCTCCCGAG GAAGATCAAA TCCTCACTTC
TTACATCCAA AAACATGGCC ATGGCAATTG GCGTGCCCTC CCAAAACAAG CAGGCCTGTT AAGATGTGGA AAAAGTTGCA
GACTGCGATG GATTAACTAT TTGAAGCCTG ATATCAAGAG AGGGAATTTC ACATCTGAAG AAGAAGAAAC TATCATTAAG
CTGCATGAGA TGCTGGGTAA CAGGTGGTCG GCAATTGCAG CAAAATTGCC CGGAAGAACT GACAACGAAA TAAAAAATGT
GTGGCACACC AATTTGAAGA AGAGGTTGCT GAATTCAAAT TCCAGAAGAG TCACAAAGCC AAAAATCAAA CGTTCTGATT
CCAATTCCAG CATCATAACT GAATCAGAAG CTGCCAATTT TAATTTCAGA GAAATGGATT CAACATCTGC CTGCACCACT
TCTAGTGATT TTTCATCGGT CACAGTTGGT GAAAGCAAAA ATATCAAGTG TGAAGACATA GAGTCTCTAG AGACAATGCC
CGTGATTGAC GAGAGTTTTT GGTCAGAACC TGCAATTGAT GAAGCACCCT CCATGTCATC ACAATCCATG ACAATCTCAA
ATCAGATGCC ATTTCAATAC CCTTTTACTA ACTATGAGGA AACTTTCCCG CAGAGTCATG CTTATGATTC AAACTTTGAT
GACGGCATGG ATTTCTGGTA TGACATATTC ACCAGGACTG CCGATTCCAC AGAATTGCCA GAGTTCTGA

>Vigan.08G143200.01
MVRAPCCEKM GLKKGPWAPE EDQILTSYIQ KHGHGNWRAL PKQAGLLRCG KSCRLRWINY LKPDIKRGNF TSEEEETIIK
LHEMLGNRWS AIAAKLPGRT DNEIKNVWHT NLKKRLLNSN SRRVTKPKIK RSDSNSSIIT ESEAANFNFR EMDSTSACTT
SSDFSSVTVG ESKNIKCEDI ESLETMPVID ESFWSEPAID EAPSMSSQSM TISNQMPFQY PFTNYEETFP QSHAYDSNFD
DGMDFWYDIF TRTADSTELP EF*