GBrowse Details

Vigan.08G140800.01

Basic Information:
Name: Vigan.08G140800.01
Multiple alignment
Variant Information
Position: Chr08:12463956..12466087 (+ strand)
Length: 2132
Functional Information:
Description: Similar to Uncharacterized protein. [Q5QJB6, Glycine max]
GO: Cellular Component: chloroplast (GO:0009507)
Molecular Function: structural molecule activity (GO:0005198)
InterPro: Plastid lipid-associated protein/fibrillin conserved domain (IPR006843)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.47,6.25,24.56,213.67,5.80,29.67,5. 55,29.04
Arabidopsis thaliana homolog: AT3G23400.1
Automatic updates:
Name: NM_001251177 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max harpin binding protein 1 (HRBP1), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:12463956..12464146 (+ strand)
Length: 191
Type: five_prime_UTR
Position: Chr08:12464147..12464371 (+ strand)
Length: 225
Type: CDS
Position: Chr08:12464462..12464698 (+ strand)
Length: 237
Type: CDS
Position: Chr08:12465354..12465480 (+ strand)
Length: 127
Type: CDS
Position: Chr08:12465641..12465855 (+ strand)
Length: 215
Type: CDS
Position: Chr08:12465856..12466087 (+ strand)
Length: 232
Type: three_prime_UTR

>Vigan.08G140800.01 class=Sequence position=Chr08:12463956..12466087 (+ strand)
AAAAGCATAC GTAAAGCATT ACGTGGCGCT GAAAGGCGAC CATAGAAAAA TTCACACCTC TTCCTGTCGC CGTGTTCCAT
TGAGAGTCCG TTGTTCTGTC TTTCTCACTC AAATCTCAGT CACATACTCA CCTCCTGCAA AAATCTCTTC CAAATTCCAC
ACTTTCCCAT TCCCAAACCC ACCCTTTCTT CATGGCTTCC CTCAACCTTC TTCCCCACCC TCCACCCTCT TCTTTTTCCT
CTTCTTCCTT TCACAGGCTC CGATGCAACA CCCTTCTTCT CGCGCCAAAA CCTTTTCAGC GCAGACCTTC TTTTCTAGTC
AAATCTGCTG TAGGTGTGGC TGAACCTGCT GCATATTCTT CTGGCTACGC CGGGGACACT TCTGATTCCA TCTCCTCTCT
GAAGCTCAAT CTGCTGGTGA GTGCTGCCCT TTTACAGCAT CTTATGATTC TGATTTTCGT TATGGTTATG TTTCTTATGC
TTGAGTTGAG CATTAAATAA GTGCAGAGCG CTGTTTCTGG GCTGAATAGA GGTCTTGCTG CTAGTGAAGA TGATCTGCGA
AAGGCTGATG GTGCGGCTAA GGAACTTGAG GCTGCTGGGG GACTTGTGGA TCTTTCCGTT GGTCTTGATA AATTGCAAGG
AAGATGGAAA CTCATATATA GCAGTGCATT CTCATCTCGA ACTCTAGGTG GTAGTCGCCC TGGACCTCCC ATTGGAAGAC
TCCTTCCCAT AACTCTTGGA CAGGTTTGTT CAGTTCCCAA CCACATATGC TACTATTGTG GTTTCATTGC TTCTCGTATA
GAACAGGGAA CCTTTCAAGT TAAAAATGAC ACACAATTAT TCTGATAAAA CCCTTTGTCC CTCAAATTCT TAGTGTCAAT
TGTCAGTGTA ATGATATAAT TTTTGTGCTG ACTGCGCTCT CTTTTCTTTT TTTCCTTGAA GAAATGTATC AATTTTGACT
CAAACCCAAA TTCTAGTCTA AGAGGTGGGG GTTGCTCCTG TTTATATCCA TTATTTTTGC CTTATCTCTA TGTCAATGTG
AGGCCTAACA CTGTACTTCC TCTTACCCGA GGATGTCTTG AATGGACTTT ACAGTTTGAA TACCCATCAC TAGGATAGAC
ATTTCTGAAT TTACTTATGG CTCAATTCAA CCCCAAAATT TATGCCAGTA TAGGGTTACC CCCATTTATA TACATTTTTT
TTGGTTAATC TCTTGTGGGG ATCTCTAACA AAGATTGAGC AAGATGTTAG ATTATATCAA ATTATGATAT ATTTTTCTTA
TTTGTTTTCT TGTTTGTGCT GTGCATCTGC TTTTGTTTAC AATCTCCGCA AGTTTTTTCT AATTACTAGT TATGTTATGC
ATAATATTTA CAGCATTCAT TTTTTTTTGT GTTGATAGGT TTTTCAACGA ATTGACATCT TAAGCAAAGA TTTTGATAAC
ATAGTGGAGC TTCAGTTGGG TGCTCCATGG CCACTACCAC CCCTTGAAGT AACAGCCACA TTGGCTCACA AATTTGAACT
TATAGGTTGG TTTTATTTTT CATGCTTTCG TTTATTATCT CTGTATATTT GTTGCAAGTT TTTCATGATT GCTTTCTACC
AGTTGCCATA TATGAGAATT GTTGTGTTGT TGTATTGTAC AGTCTTAAGA GCTTTTCATG TTTTGTGGTT TTGCAAATGT
GCCAGGATCT TCAAAGGTAA AGATAGTATT TGAGAAAACC ACTGTGAAGA CAACTGGGAA TTTACAACAG GTGCCACAAT
TAGAGGTACC TCGAATTCCG GATGCATTGA GGCCTTCTTC CAATACAGGA AGTGGTGAAT TTGAAGTTAC ATATCTTGAC
TCAGATACCC GCATCACAAG AGGGGACCGA GGCGAGCTAA GGGTCTTTGT GATTTCTTGA GTTTCTTCTG AATTCAACCT
GAGTTTTTCA TCTTCTTGCC CTTTTTTTCT TTATTCTTGA TAGTATTTAT TAATAGTTTC CCAACATTGT AAACAAGAAT
ATATGGACGG AAGTAAACCC CACTGTAACA TGTATTTACG GATGGAACTA AACCCTTCTA CGTAGTTCCA AGGAAACACG
GTACTTTATG TTTAAATGTA ATATATTTCT TTCTTAAATT AAAAAATCCA GC

>Vigan.08G140800.01
AAAAGCATAC GTAAAGCATT ACGTGGCGCT GAAAGGCGAC CATAGAAAAA TTCACACCTC TTCCTGTCGC CGTGTTCCAT
TGAGAGTCCG TTGTTCTGTC TTTCTCACTC AAATCTCAGT CACATACTCA CCTCCTGCAA AAATCTCTTC CAAATTCCAC
ACTTTCCCAT TCCCAAACCC ACCCTTTCTT CATGGCTTCC CTCAACCTTC TTCCCCACCC TCCACCCTCT TCTTTTTCCT
CTTCTTCCTT TCACAGGCTC CGATGCAACA CCCTTCTTCT CGCGCCAAAA CCTTTTCAGC GCAGACCTTC TTTTCTAGTC
AAATCTGCTG TAGGTGTGGC TGAACCTGCT GCATATTCTT CTGGCTACGC CGGGGACACT TCTGATTCCA TCTCCTCTCT
GAAGCTCAAT CTGCTGAGCG CTGTTTCTGG GCTGAATAGA GGTCTTGCTG CTAGTGAAGA TGATCTGCGA AAGGCTGATG
GTGCGGCTAA GGAACTTGAG GCTGCTGGGG GACTTGTGGA TCTTTCCGTT GGTCTTGATA AATTGCAAGG AAGATGGAAA
CTCATATATA GCAGTGCATT CTCATCTCGA ACTCTAGGTG GTAGTCGCCC TGGACCTCCC ATTGGAAGAC TCCTTCCCAT
AACTCTTGGA CAGGTTTTTC AACGAATTGA CATCTTAAGC AAAGATTTTG ATAACATAGT GGAGCTTCAG TTGGGTGCTC
CATGGCCACT ACCACCCCTT GAAGTAACAG CCACATTGGC TCACAAATTT GAACTTATAG GATCTTCAAA GGTAAAGATA
GTATTTGAGA AAACCACTGT GAAGACAACT GGGAATTTAC AACAGGTGCC ACAATTAGAG GTACCTCGAA TTCCGGATGC
ATTGAGGCCT TCTTCCAATA CAGGAAGTGG TGAATTTGAA GTTACATATC TTGACTCAGA TACCCGCATC ACAAGAGGGG
ACCGAGGCGA GCTAAGGGTC TTTGTGATTT CTTGAGTTTC TTCTGAATTC AACCTGAGTT TTTCATCTTC TTGCCCTTTT
TTTCTTTATT CTTGATAGTA TTTATTAATA GTTTCCCAAC ATTGTAAACA AGAATATATG GACGGAAGTA AACCCCACTG
TAACATGTAT TTACGGATGG AACTAAACCC TTCTACGTAG TTCCAAGGAA ACACGGTACT TTATGTTTAA ATGTAATATA
TTTCTTTCTT AAATTAAAAA ATCCAGC

>Vigan.08G140800.01
ATGGCTTCCC TCAACCTTCT TCCCCACCCT CCACCCTCTT CTTTTTCCTC TTCTTCCTTT CACAGGCTCC GATGCAACAC
CCTTCTTCTC GCGCCAAAAC CTTTTCAGCG CAGACCTTCT TTTCTAGTCA AATCTGCTGT AGGTGTGGCT GAACCTGCTG
CATATTCTTC TGGCTACGCC GGGGACACTT CTGATTCCAT CTCCTCTCTG AAGCTCAATC TGCTGAGCGC TGTTTCTGGG
CTGAATAGAG GTCTTGCTGC TAGTGAAGAT GATCTGCGAA AGGCTGATGG TGCGGCTAAG GAACTTGAGG CTGCTGGGGG
ACTTGTGGAT CTTTCCGTTG GTCTTGATAA ATTGCAAGGA AGATGGAAAC TCATATATAG CAGTGCATTC TCATCTCGAA
CTCTAGGTGG TAGTCGCCCT GGACCTCCCA TTGGAAGACT CCTTCCCATA ACTCTTGGAC AGGTTTTTCA ACGAATTGAC
ATCTTAAGCA AAGATTTTGA TAACATAGTG GAGCTTCAGT TGGGTGCTCC ATGGCCACTA CCACCCCTTG AAGTAACAGC
CACATTGGCT CACAAATTTG AACTTATAGG ATCTTCAAAG GTAAAGATAG TATTTGAGAA AACCACTGTG AAGACAACTG
GGAATTTACA ACAGGTGCCA CAATTAGAGG TACCTCGAAT TCCGGATGCA TTGAGGCCTT CTTCCAATAC AGGAAGTGGT
GAATTTGAAG TTACATATCT TGACTCAGAT ACCCGCATCA CAAGAGGGGA CCGAGGCGAG CTAAGGGTCT TTGTGATTTC
TTGA

>Vigan.08G140800.01
MASLNLLPHP PPSSFSSSSF HRLRCNTLLL APKPFQRRPS FLVKSAVGVA EPAAYSSGYA GDTSDSISSL KLNLLSAVSG
LNRGLAASED DLRKADGAAK ELEAAGGLVD LSVGLDKLQG RWKLIYSSAF SSRTLGGSRP GPPIGRLLPI TLGQVFQRID
ILSKDFDNIV ELQLGAPWPL PPLEVTATLA HKFELIGSSK VKIVFEKTTV KTTGNLQQVP QLEVPRIPDA LRPSSNTGSG
EFEVTYLDSD TRITRGDRGE LRVFVIS*