GBrowse Details

Vigan.08G136200.01

Basic Information:
Name: Vigan.08G136200.01
Multiple alignment
Variant Information
Position: Chr08:12015431..12019275 (- strand)
Length: 3845
Functional Information:
Description: Similar to Sieve element-occluding protein. [E2FKJ6, Medicago truncatula]
InterPro: Sieve element occlusion, N-terminal (IPR027942)
Sieve element occlusion, C-terminal (IPR027944)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.15,8.78,5.20,1.42,0.01,1.13,1.56,9.00
Automatic updates:
Name: NM_001252917 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sieve element occlusion g (SEOG), mRNA.
PubMed ID: 20932300 NCBI(pubmed)
Status: Known Variant
Name: NM_001254244 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sieve element occlusion r (SEOR), mRNA.
PubMed ID: 20932300 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:12015431..12015691 (- strand)
Length: 261
Type: three_prime_UTR
Position: Chr08:12015692..12016267 (- strand)
Length: 576
Type: CDS
Position: Chr08:12016430..12016888 (- strand)
Length: 459
Type: CDS
Position: Chr08:12017665..12017795 (- strand)
Length: 131
Type: CDS
Position: Chr08:12017923..12018017 (- strand)
Length: 95
Type: CDS
Position: Chr08:12018159..12018604 (- strand)
Length: 446
Type: CDS
Position: Chr08:12018733..12018825 (- strand)
Length: 93
Type: CDS
Position: Chr08:12018926..12019132 (- strand)
Length: 207
Type: CDS
Position: Chr08:12019133..12019275 (- strand)
Length: 143
Type: five_prime_UTR

>Vigan.08G136200.01 class=Sequence position=Chr08:12015431..12019275 (- strand)
AAAAGACTAG CCACCAAAAT TGATCATGTC TTCACTTTAT AAATAGAGAA GGAGTCTGGT TAATCATCAC CACAACTCTC
CTTCTTTTAA TCTTCCCATC TCTCAGACTT TGTCATAATT CCTGAAAGAG AGCTGTGACC ATAATGGCCA CCAAGCATTC
ACTCAAGTCT CTCTTTCACC GAAGTTCAGA GAGTGATCAC AACCCGTTAA ACATGTCCGA TGAGCAGATA CTGGAGCAAA
TTTACTCAAC CCATGTCCAC AGTCACACCA AGTTCGATGT CGACTCTCTT TTCGTTCTTG TCGAGAACAC CCTTAGGCGT
TCAACTCTCA TTGTTGACAA CGTTGTTCAG GTTTACATAC ATATTTCTAC TTCTGGTGCC CTATTTCCCT CCGTCTTTCT
TTTTCTCGAT TTCCTTCATA ACTTTTATGT CATTGTGATG ACTTTTACAG GGATCCAAAT CAAGCCTGGA GCAGCTAGAA
GACAAGATCC CCCAAGCCAA CTTCAATTCA CCACTCTGCA CCCTCAAGCA AATTTCTTCC GAGGTCATTC ATTAACTTAA
TTTTGTCACG TAAAGATTAA TCAGGATTAT GAACACGTGA CATGGTTGGA TCTGTCTGAT AATTTTTGTG TCTAATATAG
TCCAGCAAAG TAACATGTTG AATGATGACA GATGTCATGC AAGCCTGCCG GAGAGGAAAT TGCTCACAAA ACTACAATGG
CGATACTTGT GAAGCTTGCA AACTATGAGT GGGATGCAAA AGCGGTGCTC ACACTGGCAG CTTTTGCAAT GGAATATGGC
GAGTTCTGGT TGCTAGCTCA GCATCAACCA ACAGACCCTA TTGCAAAATC TGTGGCTTTT CTCAGGAGAG TCCCGGAGCT
CACAAGACCT GCAGCACTGC AAAAGCATCG CCAAGCCATT ATAGAGCTCA ACAATCTGGT GAAGACAACG CTGCTAGTGA
TTGAGCTAAT CTTTGAGTTG GAGAAACTTA CAACGTTCGA CACAAAGGAT GTGCCTGCTT TGTTGCCCGC AATAGAACAA
ATTCCTGTTG ATGTCTACTG GGCCATCATC ACCATCGTGG CTATTGAGAC TAAGATTGAT TACCTCACTA CCGAAACGTA
AGTAACTTCA GTTGTTATCT TTGTGCTTTA CGTAAATATA TATCAAAATT TCCTATGTGT TTGTTGTTTT ATGAGTATAA
GTTATTATTA AACACATTTT AAAACCTGAT TGATATTCCA TTAATTGCTT GATTTTAGAG GGAACAAGCA GGATCTCTCC
CACTATGGTC AAAAGATCAA CATCATACTC AGCAAACTTA GGAAGCAAAT CATGCTTTGC AGACAACAGA TTGGTCGGTA
ACTTAACTGG ATATAACCTT TTATCTTTTA TAGCAAGCAA AAACTTGACA AATTGAATTT TTGCATTTAA AACTAAAAGT
GTTATCTTTT ATATAACATT TTTTGTTTTT TCTATTTCAG AGGAGGCAGA GTATCATCAC AGGCTCAGGA AATTTTTTCA
GACGCCTACT GAAATAATGG AGGTGTTTAA GTTTCTGGTT TTTTCGAAGG ATGCCCCACA CCAACTGTTT GATGGTGCCA
CAAAGACCAC GGTTTGTCAC TCTTTGAAAC AAATTTCTAG ATAGTTTGGG CAATCATTTA CCACTCAATA ATAACTGCAA
AAGTTATGAT TTTTAAACAT CGTACCGATT TAATTTTTTT AACTTTTAAT CCACAATTGG CAGTTTCACT TTCATAATTG
TGACTCGGAT CTCTCTCTCT CTTCTCATCA ATAGCTTATA CTCCATTTGG CTTAAATATA AAATACACTT GTTTTTTTTT
TCCATAGAAT ATATAGAAAA TTTGTTGAAT ATTATATTTT TGTGTTATAT TACCTGATGT TGGACAGGGT AAGTTATAAT
TCAAGCGTTA GCATAAAACT TTGGTAAAGA CAAATATATT TAAACTAATA TTTTATTGAG TAAAAAGAAT AAATGATTGC
TTTTATAATA ACTATTTTAA ATATATAAAC TATATTATAA TTAAAATCTA TAGTAAAGAA TTTAAAGTAC ATAAAAAAGT
TTCAACTTAT AGTATTTTTT AAAATATTGA GATGTAGTTT TAGAGATTAA CATGAAAGGT AATAGATTGA AATGATGGCC
ACAAAATCAA ATGGTAATAA TAATAGACAA AGGGGATTGC CTTTATCAGC CTATGGTCCT TATAGGAAAA TTAAATCACT
CCTGTACAAA ATATATTACA AAAAAAAAAA TCATCTGATG ACACTAAATC TAAAATAAAT TTAATGGTGT GCAAAATCAT
TTTTGCACAT GATGTCCGTT TTTATTGATT CATCGTTATT GATTTTGATT ATTGTTTGTT TGGGCAGGTT GAAATAACTG
AGCTGAAGAA GAAGAATGTG TACTTGTTGA TCTCCACTCT AGAGATCACG GATGAAGAGA TTTCAGTACT ACGACCAGTG
TATGAATATA TTAAAACAAA TGATCAATAT AAGATTGTGT GGATTCCCAT CGTAGAGGAA TGGACCGAAA AGTTACACAA
GAGATTTGAG GTTTTGAAAA GCAAGATGCC GTGGTACGTG GTGCAGCACT TCGGAGTAAT AGCAGGGTAC AAGTACATTA
AGGAGGAATG GCACTTCAAA AAGAAACCTA TGGTTGTGGT GTTGAATCCT CAGGGAAAAG TGCAACATGC AAACGCTTTC
CATCTCATTC ATGTTTATGG AATGAAGGCC TTTCCCTTTA CTATTGCTGA TCAAGAGAGA ATTGATAGAG AAATTCACTG
GATTGGTTCG GTGGTAGGGG ATACTCACCC TCACGTAAGC ACCTGGGTAA GCAAATTTCG CAAATGGATA TGCAAATGCT
CCTCTTGTTA GTTTTTTGAG CAATCAATCA GGTTTTTGAA TATTTTTCCC TTTATTGATA TCTCAAGCAT TGGTATTGTT
TAAGAGCTTA ATTGGAAGGT TGTGGTGTGA CTTCTTTCTA AGATGCAGAT CAGAGAGCAG AAGTACATTC TCATATACGG
AGGAAGCGAC AAAGAATGGA TCCAACAGTT CACAAAATAC GCAACTAACT TTGCAAATGA CGGCGCTCTA AAGGAGGCAA
ATATTCAAAT AGAGTTGTTC TGTGTGGAAA AGGAAGATAA AAACTTTCTG AGGAGGTTTT GGAGTGGCAT AGAGAGCTTG
TTTGTGACGA AGGCTCACAA CACAGTCGAT GCAGTGACTC AAGAAGTGCA AAGGATGCTT TCTTACAAGA ATGAAACTGG
GTGGGCTGTC CTCTGCAAAG GGTCATCTGT GCTGATGAGT GGTCATGGAA GCACAGTGTT GAAGACAGTG TCTGAGTTTG
ACAAATGGAA AGAGGCTATG CTGAAAAAAG GGTTTGAGCC TTCCTTCAAA GAGCACCATG AAAGGATTGT GCGCACCACA
CATCGCTGCG TGCACCTTGA AATTCCTAAT ATTGCAGGAA AGATGCCAGA GACCATAAAA TGTCCCGAGT GTGGCAGGAC
AATGGAGATT TTCATCAGCT ATAAATGCTG CCACACTGAT TCTACTTCAA TTGCCATACA CTAGAATTCA ACGCCAACTG
CTTCTTTTAT GTTATGAATG AGACAGTGTA GTCTTCGGTT ATGGGACTAA GTTTTTCTGC TCAAATAAAT TTTTCTTTCA
ATAGAAGGAC TTCTGTGTGA CCTTAAAAAT AAGGTGTGTA ATTCGGTACT CTTAATCTTC AATAGTTTTA CAATGACAGG
GTGATTCCTT TGCATTGCAC GATCTGTTGC CAGTGTACTA TTTATCTTTA CAAATATATA ATCAATTGTT TTTTTTCTTC
TAAGT

>Vigan.08G136200.01
AAAAGACTAG CCACCAAAAT TGATCATGTC TTCACTTTAT AAATAGAGAA GGAGTCTGGT TAATCATCAC CACAACTCTC
CTTCTTTTAA TCTTCCCATC TCTCAGACTT TGTCATAATT CCTGAAAGAG AGCTGTGACC ATAATGGCCA CCAAGCATTC
ACTCAAGTCT CTCTTTCACC GAAGTTCAGA GAGTGATCAC AACCCGTTAA ACATGTCCGA TGAGCAGATA CTGGAGCAAA
TTTACTCAAC CCATGTCCAC AGTCACACCA AGTTCGATGT CGACTCTCTT TTCGTTCTTG TCGAGAACAC CCTTAGGCGT
TCAACTCTCA TTGTTGACAA CGTTGTTCAG GGATCCAAAT CAAGCCTGGA GCAGCTAGAA GACAAGATCC CCCAAGCCAA
CTTCAATTCA CCACTCTGCA CCCTCAAGCA AATTTCTTCC GAGATGTCAT GCAAGCCTGC CGGAGAGGAA ATTGCTCACA
AAACTACAAT GGCGATACTT GTGAAGCTTG CAAACTATGA GTGGGATGCA AAAGCGGTGC TCACACTGGC AGCTTTTGCA
ATGGAATATG GCGAGTTCTG GTTGCTAGCT CAGCATCAAC CAACAGACCC TATTGCAAAA TCTGTGGCTT TTCTCAGGAG
AGTCCCGGAG CTCACAAGAC CTGCAGCACT GCAAAAGCAT CGCCAAGCCA TTATAGAGCT CAACAATCTG GTGAAGACAA
CGCTGCTAGT GATTGAGCTA ATCTTTGAGT TGGAGAAACT TACAACGTTC GACACAAAGG ATGTGCCTGC TTTGTTGCCC
GCAATAGAAC AAATTCCTGT TGATGTCTAC TGGGCCATCA TCACCATCGT GGCTATTGAG ACTAAGATTG ATTACCTCAC
TACCGAAACA GGGAACAAGC AGGATCTCTC CCACTATGGT CAAAAGATCA ACATCATACT CAGCAAACTT AGGAAGCAAA
TCATGCTTTG CAGACAACAG ATTGAGGAGG CAGAGTATCA TCACAGGCTC AGGAAATTTT TTCAGACGCC TACTGAAATA
ATGGAGGTGT TTAAGTTTCT GGTTTTTTCG AAGGATGCCC CACACCAACT GTTTGATGGT GCCACAAAGA CCACGGTTGA
AATAACTGAG CTGAAGAAGA AGAATGTGTA CTTGTTGATC TCCACTCTAG AGATCACGGA TGAAGAGATT TCAGTACTAC
GACCAGTGTA TGAATATATT AAAACAAATG ATCAATATAA GATTGTGTGG ATTCCCATCG TAGAGGAATG GACCGAAAAG
TTACACAAGA GATTTGAGGT TTTGAAAAGC AAGATGCCGT GGTACGTGGT GCAGCACTTC GGAGTAATAG CAGGGTACAA
GTACATTAAG GAGGAATGGC ACTTCAAAAA GAAACCTATG GTTGTGGTGT TGAATCCTCA GGGAAAAGTG CAACATGCAA
ACGCTTTCCA TCTCATTCAT GTTTATGGAA TGAAGGCCTT TCCCTTTACT ATTGCTGATC AAGAGAGAAT TGATAGAGAA
ATTCACTGGA TTGGTTCGGT GGTAGGGGAT ACTCACCCTC ACGTAAGCAC CTGGATCAGA GAGCAGAAGT ACATTCTCAT
ATACGGAGGA AGCGACAAAG AATGGATCCA ACAGTTCACA AAATACGCAA CTAACTTTGC AAATGACGGC GCTCTAAAGG
AGGCAAATAT TCAAATAGAG TTGTTCTGTG TGGAAAAGGA AGATAAAAAC TTTCTGAGGA GGTTTTGGAG TGGCATAGAG
AGCTTGTTTG TGACGAAGGC TCACAACACA GTCGATGCAG TGACTCAAGA AGTGCAAAGG ATGCTTTCTT ACAAGAATGA
AACTGGGTGG GCTGTCCTCT GCAAAGGGTC ATCTGTGCTG ATGAGTGGTC ATGGAAGCAC AGTGTTGAAG ACAGTGTCTG
AGTTTGACAA ATGGAAAGAG GCTATGCTGA AAAAAGGGTT TGAGCCTTCC TTCAAAGAGC ACCATGAAAG GATTGTGCGC
ACCACACATC GCTGCGTGCA CCTTGAAATT CCTAATATTG CAGGAAAGAT GCCAGAGACC ATAAAATGTC CCGAGTGTGG
CAGGACAATG GAGATTTTCA TCAGCTATAA ATGCTGCCAC ACTGATTCTA CTTCAATTGC CATACACTAG AATTCAACGC
CAACTGCTTC TTTTATGTTA TGAATGAGAC AGTGTAGTCT TCGGTTATGG GACTAAGTTT TTCTGCTCAA ATAAATTTTT
CTTTCAATAG AAGGACTTCT GTGTGACCTT AAAAATAAGG TGTGTAATTC GGTACTCTTA ATCTTCAATA GTTTTACAAT
GACAGGGTGA TTCCTTTGCA TTGCACGATC TGTTGCCAGT GTACTATTTA TCTTTACAAA TATATAATCA ATTGTTTTTT
TTCTTCTAAG T

>Vigan.08G136200.01
ATGGCCACCA AGCATTCACT CAAGTCTCTC TTTCACCGAA GTTCAGAGAG TGATCACAAC CCGTTAAACA TGTCCGATGA
GCAGATACTG GAGCAAATTT ACTCAACCCA TGTCCACAGT CACACCAAGT TCGATGTCGA CTCTCTTTTC GTTCTTGTCG
AGAACACCCT TAGGCGTTCA ACTCTCATTG TTGACAACGT TGTTCAGGGA TCCAAATCAA GCCTGGAGCA GCTAGAAGAC
AAGATCCCCC AAGCCAACTT CAATTCACCA CTCTGCACCC TCAAGCAAAT TTCTTCCGAG ATGTCATGCA AGCCTGCCGG
AGAGGAAATT GCTCACAAAA CTACAATGGC GATACTTGTG AAGCTTGCAA ACTATGAGTG GGATGCAAAA GCGGTGCTCA
CACTGGCAGC TTTTGCAATG GAATATGGCG AGTTCTGGTT GCTAGCTCAG CATCAACCAA CAGACCCTAT TGCAAAATCT
GTGGCTTTTC TCAGGAGAGT CCCGGAGCTC ACAAGACCTG CAGCACTGCA AAAGCATCGC CAAGCCATTA TAGAGCTCAA
CAATCTGGTG AAGACAACGC TGCTAGTGAT TGAGCTAATC TTTGAGTTGG AGAAACTTAC AACGTTCGAC ACAAAGGATG
TGCCTGCTTT GTTGCCCGCA ATAGAACAAA TTCCTGTTGA TGTCTACTGG GCCATCATCA CCATCGTGGC TATTGAGACT
AAGATTGATT ACCTCACTAC CGAAACAGGG AACAAGCAGG ATCTCTCCCA CTATGGTCAA AAGATCAACA TCATACTCAG
CAAACTTAGG AAGCAAATCA TGCTTTGCAG ACAACAGATT GAGGAGGCAG AGTATCATCA CAGGCTCAGG AAATTTTTTC
AGACGCCTAC TGAAATAATG GAGGTGTTTA AGTTTCTGGT TTTTTCGAAG GATGCCCCAC ACCAACTGTT TGATGGTGCC
ACAAAGACCA CGGTTGAAAT AACTGAGCTG AAGAAGAAGA ATGTGTACTT GTTGATCTCC ACTCTAGAGA TCACGGATGA
AGAGATTTCA GTACTACGAC CAGTGTATGA ATATATTAAA ACAAATGATC AATATAAGAT TGTGTGGATT CCCATCGTAG
AGGAATGGAC CGAAAAGTTA CACAAGAGAT TTGAGGTTTT GAAAAGCAAG ATGCCGTGGT ACGTGGTGCA GCACTTCGGA
GTAATAGCAG GGTACAAGTA CATTAAGGAG GAATGGCACT TCAAAAAGAA ACCTATGGTT GTGGTGTTGA ATCCTCAGGG
AAAAGTGCAA CATGCAAACG CTTTCCATCT CATTCATGTT TATGGAATGA AGGCCTTTCC CTTTACTATT GCTGATCAAG
AGAGAATTGA TAGAGAAATT CACTGGATTG GTTCGGTGGT AGGGGATACT CACCCTCACG TAAGCACCTG GATCAGAGAG
CAGAAGTACA TTCTCATATA CGGAGGAAGC GACAAAGAAT GGATCCAACA GTTCACAAAA TACGCAACTA ACTTTGCAAA
TGACGGCGCT CTAAAGGAGG CAAATATTCA AATAGAGTTG TTCTGTGTGG AAAAGGAAGA TAAAAACTTT CTGAGGAGGT
TTTGGAGTGG CATAGAGAGC TTGTTTGTGA CGAAGGCTCA CAACACAGTC GATGCAGTGA CTCAAGAAGT GCAAAGGATG
CTTTCTTACA AGAATGAAAC TGGGTGGGCT GTCCTCTGCA AAGGGTCATC TGTGCTGATG AGTGGTCATG GAAGCACAGT
GTTGAAGACA GTGTCTGAGT TTGACAAATG GAAAGAGGCT ATGCTGAAAA AAGGGTTTGA GCCTTCCTTC AAAGAGCACC
ATGAAAGGAT TGTGCGCACC ACACATCGCT GCGTGCACCT TGAAATTCCT AATATTGCAG GAAAGATGCC AGAGACCATA
AAATGTCCCG AGTGTGGCAG GACAATGGAG ATTTTCATCA GCTATAAATG CTGCCACACT GATTCTACTT CAATTGCCAT
ACACTAG

>Vigan.08G136200.01
MATKHSLKSL FHRSSESDHN PLNMSDEQIL EQIYSTHVHS HTKFDVDSLF VLVENTLRRS TLIVDNVVQG SKSSLEQLED
KIPQANFNSP LCTLKQISSE MSCKPAGEEI AHKTTMAILV KLANYEWDAK AVLTLAAFAM EYGEFWLLAQ HQPTDPIAKS
VAFLRRVPEL TRPAALQKHR QAIIELNNLV KTTLLVIELI FELEKLTTFD TKDVPALLPA IEQIPVDVYW AIITIVAIET
KIDYLTTETG NKQDLSHYGQ KINIILSKLR KQIMLCRQQI EEAEYHHRLR KFFQTPTEIM EVFKFLVFSK DAPHQLFDGA
TKTTVEITEL KKKNVYLLIS TLEITDEEIS VLRPVYEYIK TNDQYKIVWI PIVEEWTEKL HKRFEVLKSK MPWYVVQHFG
VIAGYKYIKE EWHFKKKPMV VVLNPQGKVQ HANAFHLIHV YGMKAFPFTI ADQERIDREI HWIGSVVGDT HPHVSTWIRE
QKYILIYGGS DKEWIQQFTK YATNFANDGA LKEANIQIEL FCVEKEDKNF LRRFWSGIES LFVTKAHNTV DAVTQEVQRM
LSYKNETGWA VLCKGSSVLM SGHGSTVLKT VSEFDKWKEA MLKKGFEPSF KEHHERIVRT THRCVHLEIP NIAGKMPETI
KCPECGRTME IFISYKCCHT DSTSIAIH*