GBrowse Details

Vigan.08G124300.01

Basic Information:
Name: Vigan.08G124300.01
Multiple alignment
Variant Information
Position: Chr08:10933071..10937088 (+ strand)
Length: 4018
Functional Information:
Description: Similar to Uncharacterized protein. [I1NHU0, Glycine max]
GO: Molecular Function: hydrolase activity (GO:0016787)
InterPro: NUDIX hydrolase domain (IPR000086)
NUDIX hydrolase domain-like (IPR015797)
NUDIX hydrolase, conserved site (IPR020084)
NUDIX hydrolase (IPR020476)
RNA pyrophosphohydrolase RppH (IPR022927)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:90.50,96.00,43.36,47.96,50.62,68.19,30.48,36.72
Arabidopsis thaliana homolog: AT3G10620.1
Automatic updates:
Name: NM_001251637 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499956 (LOC100499956), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:10933071..10933126 (+ strand)
Length: 56
Type: five_prime_UTR
Position: Chr08:10933127..10933312 (+ strand)
Length: 186
Type: CDS
Position: Chr08:10933398..10933448 (+ strand)
Length: 51
Type: CDS
Position: Chr08:10934034..10934126 (+ strand)
Length: 93
Type: CDS
Position: Chr08:10936138..10936232 (+ strand)
Length: 95
Type: CDS
Position: Chr08:10936492..10936606 (+ strand)
Length: 115
Type: CDS
Position: Chr08:10936709..10936774 (+ strand)
Length: 66
Type: CDS
Position: Chr08:10936775..10937088 (+ strand)
Length: 314
Type: three_prime_UTR

>Vigan.08G124300.01 class=Sequence position=Chr08:10933071..10937088 (+ strand)
GGCCCATTAT AAAGCTATTA TTTTGGTACT GTTGTTTCTC CTTTTCTTCT CTCCTAATGG CTTTGTGCCG ATTCGCTTAT
TGTTCCCCTG CTTCATCTGC TCCCAAATTC ATTCGTTTCC CGAAATACCC TTCAAAACAC GTTAAATTCT CTTTGCTGCC
GTTCTCATTC GCAACGATGG AAGCTCCTCC AGAAGGTTAC CGCAGGAACG TTGGTATCTG TCTCATGAAC GCTCACAAGA
AGGTTCGTTC CTTCGTTCTC TCGAAATCCC TCTGCTTTTG GTTTCCGCTT TTTATTCATC AAAGCTTAAT AATTCGTGTT
TTTGCAGATT TTCGCGGCTT CGAGGCTCGA CATTCCCAAT GCTTGGCAAA TGCCGCAGGT GTCTATCTTT TGATTCTTCT
TTGTAGTTAT CTATCTCTAT GAATTGAGTT TAAAACTAAA AGTAAAATTA TGATTAAATT ACATGTTGGT CCTGAACTAC
TCGGTAATTT TTTAGTTGCT TCCTAATTAT TATTCTTTTG TTGGATGTAA GTTTTTTAAT TAACTCTCGA GAATTTTGAA
AACTATTTAA ATTGTTGTTG TTTTTTGTCG GATTAAGCTG CCACAAACTA AATAGCAGGG ACCTTTTTTT TAGTTCAAGG
ACTTTATTTA TTTTTGTTAA AATCCTAATT TAAAAATTCT CAAATAGTTT AGGATTTAAT GGAATGATAA CATCAATTAC
TATAAAAATT TATCATCATA TTTCTGAGAA CTCGAAAGAA AGCAAAAGTC CTAAAACAGA GTTTAGCAAT ACCAAAGTGT
TGCACAGGCG TGGGAATTGG GAAAAAATTA TTGATGGTAA CTAATTAATA AACAAATAAA GAAATCCGAA GAGTTCGTGA
TTTTACTTGT ATTTCAGCGT GTTTTTTGCT GAAAGGAATA ATGAATGTAA ATTTGTAATG TTCTTAATGG TGGCATCTTT
TAGGGTGGTA TTGATGAAGG TGAGGATCCA AGAAATGCAG CTATCAGGGA ATTAAGAGAA GAGACGGGAG TTAATTCGGC
CGAAGTGATC GCAGAGGTGC AAATTATACA TTTCTTTAGT TGCTAACGCC CTACAAATTA CATGCTTGGC TGTGCTTAAT
TTACAAGTGC CAAATCATTT TTCACCATCA TAATAACTTG GTTACGTAAT TGCATTTCTC CTCCCTTTTA GGATACTCAT
ACCAGCTTAT ATCCTTGTAC AGGGATGTGA ACGCATTATA CGATGACTGC ATGTGTTAAA ACATTGTTAT AGAATGAGTG
AAGTGGGCAA GGCCTTCTGA AGATGTGTTA TTGTATGTGT TAAACTTTGT TTGATTTTAT TAGATTCAAT GATTCAATCT
TTGAATCACA GTATTTTGGT TTATTTATAT TGTTTTATTA GCGCTTAGTT GGATGAATTT CTCCATAAGC ACTTTTAGGA
AGAAAAAGTG AGAAGAAAAA TTGAAATTAT CTTATGCACA GGTTTATTTG TAGAAGCCCT CCAGTATAGT TTTTCTAAAT
TTTTATTTTA ACTTACACAT GGTAATTTTA GTTTATGCAG AAGTCAATTC ATTTTCTTCT TATTTTTCTT TCCTAAAAAT
GCTTATGGAG AAGTTCATCC AAACAAACCC TAAAGTTTAG ACAGTTAGAA GTTGGTTGCT CTTGGAAGGA AAGGAATTTT
GATAGAAAGA TGATTGTATT CTTGAGGCTG CGGGTGGGAA AAAACTGTTA AGCATGAACA GTGTACAAAA GATATGGTAG
AGAAAACAGC TTACCTGCTT CAGTCTAGCC TAATAATCAC AATTAAAAAC TAGTTTATCT TAAATTTTTC TTCAATCTTG
AGTTCACAGA TACCAAGATA TCTAAGGGTC CATTTGGTTT CAGAAAGCGA TTTTTTTTCA CTTCTTTTCC CTTTTCATAT
GTTATAAGGA AACAATAAAA ACAGAAAGTA AGAAATGGTT GTCACCTCTC ATTCTTATAT AAACTTTTGT AAATAGGAAA
AGTAAAAACA AGAAAAATGG GAGACATTTC CTCAAACCTT TTCTTACGTA GATTTAGTCT TTCATTATGA AATCTAGGAA
ATAATTTTGA CAGAACACAG GCCAACTCAA TGTTACAGCT TAAATTAGGC CTGTGAATGG TTTATATATC TAACATGCTC
CTTCATATGA CAACCCGCTT AGTTCTTCTG CAGAAATACT GATGATCAGT TATAACATAG GCCAACTCAA TGTTACAGCT
TAAATTAGGC CTCTGAATGG TTTATATCTC TAACATGCTC CTTCATATGA CAACCCGCTT AGTTCTTCTG CAGAAATACT
GATGATCAGT TATAACATAG GCCAACTCAA TGTTACAGCT TAAATTAGGC CTCTGAATGG TTTATATCTC TAACATGCTC
CTTCATGTGA CAACCCGTTT AGTTCTTCTG CAGAAATACT GATCAGTTAG AAGCACAAAA CGACAAGGAT CATACCCGAA
CTTCTAGATA TATCATACTG TTTATCTGCT TATGAAACCA TCAAATTGGT CATTTGGTGG AGATTAATAC CATCAGTTAT
GTTCTCCATG ATCAATTTAA CTGCAGAATT TGATGTCATG TGTATCTTTG GAGTACTGAT TTGATGTATC TGCAAATGTG
ATGTTTCATA CATCTTTTGG TGGACCAAGA TATATAATAT TCCAAAATCT TCATTGTTGG TGGAGGCCTA TGAATGATTT
ATATTTCCGA TTACCATAAA AAATTCTTCC AAAGAAAGGT GCCTGCAGCT AGTAAAAAAT GTTTTAATAA AATTATAAAA
TCTTTGTGCA CGATCTTTTG TTAAATTGTT ACTGTCTATA CTCATCAGGC CTTTGAGCTG TGTTGAACAA CAAAATCAGC
CCCCTTTCAA TGCTTCTGAT TGTGCTAGAG TTACAATGTT ACATCTAATC ATAGTAATAT GATCTGTGAA TGTCAGTTAA
TCCACTCACT AATATTGGTT TTCATCTAGC ACGAAATCCA AAAAAAGCAA CTTTTCTTTT TCCTTGCTGT GATGATAAAT
GTTCATCCTG GTGGCTTTAT GTTGTAGGTA CCATATTGGT TAACTTATGA TTTCCCACCG AAAGTGAGGG ACAAATTAAA
TATTCAGTGG GGATCTGATT GGAAGGGTCA GGCACAGAAA TGGTAAACAT TTGGATATGC TCAGTCTGGA TAGAGTAAAA
CCCATAAGAA AAGTACACAA CCAAATTATA TAACGTTTTT GACAAGTTTT CTTTACCTTC TTATTATGAT GAGGTTATAG
GGTTATGCCT ATATGCATTT GTAGTTGTGT ATGTAACTAT GGGTGAGTGC AGGGAAAGGA CTTCCGAATT GGAAGGCATT
GTAGAGGGAT GTTTTGTTTG CTTTGGTAAA TAATGTTTTT AGCACTTTTT GCTTTACACA GGTTTCTTTT AAAGTTCACT
GGGCAAGATC AAGAAATCAA TCTTCTGGGT GATGGCACTG AGAAAGCTGA ATTTGGGGAA TGGTCATGGA TATCACCTGA
ACAAATAATT GATCTTGTAA GTATACGTGA TGGTCACAAC TTTTTTCGTA CTTGTCCAAC GACAATTAAG ACGCGGTACT
GTAGACAACA TATGACTTGG TTTATCTTTT CTGTGCAGGC AGTAGATTTC AAAAAGCCTG TCTACAAGGA AGTCCTAGCA
GAGTTTGCTC CATATTTCCA ATAGTCTTAT CTCTGCCAGA AATTGTTATG GCTTTCCAAT GACAGTGCTT TTGGTGATTC
AGAGGTTGTT TTTAAGAAGA ATGTATTCCA AATAAACTAC CTAGACACGC GAAGAGAGCT ATTTATGTAT GTCCGAGTGA
AATATATATT ATGGTAGAAA TTGGCATGTC AGGAATTGCA TCTTTCCACT TCCTTTTTTT CATGATGAAA CATGGCACGT
ATTTTACCGT ATGAAATGAG TTTTGTGATT ACTAACATAC AAATCCTGTC CTTTTGTGAA CGCAGTAATA GTAATAAGAT
TTCTGTCGAA AGTTAAAT

>Vigan.08G124300.01
GGCCCATTAT AAAGCTATTA TTTTGGTACT GTTGTTTCTC CTTTTCTTCT CTCCTAATGG CTTTGTGCCG ATTCGCTTAT
TGTTCCCCTG CTTCATCTGC TCCCAAATTC ATTCGTTTCC CGAAATACCC TTCAAAACAC GTTAAATTCT CTTTGCTGCC
GTTCTCATTC GCAACGATGG AAGCTCCTCC AGAAGGTTAC CGCAGGAACG TTGGTATCTG TCTCATGAAC GCTCACAAGA
AGATTTTCGC GGCTTCGAGG CTCGACATTC CCAATGCTTG GCAAATGCCG CAGGGTGGTA TTGATGAAGG TGAGGATCCA
AGAAATGCAG CTATCAGGGA ATTAAGAGAA GAGACGGGAG TTAATTCGGC CGAAGTGATC GCAGAGGTAC CATATTGGTT
AACTTATGAT TTCCCACCGA AAGTGAGGGA CAAATTAAAT ATTCAGTGGG GATCTGATTG GAAGGGTCAG GCACAGAAAT
GGTTTCTTTT AAAGTTCACT GGGCAAGATC AAGAAATCAA TCTTCTGGGT GATGGCACTG AGAAAGCTGA ATTTGGGGAA
TGGTCATGGA TATCACCTGA ACAAATAATT GATCTTGCAG TAGATTTCAA AAAGCCTGTC TACAAGGAAG TCCTAGCAGA
GTTTGCTCCA TATTTCCAAT AGTCTTATCT CTGCCAGAAA TTGTTATGGC TTTCCAATGA CAGTGCTTTT GGTGATTCAG
AGGTTGTTTT TAAGAAGAAT GTATTCCAAA TAAACTACCT AGACACGCGA AGAGAGCTAT TTATGTATGT CCGAGTGAAA
TATATATTAT GGTAGAAATT GGCATGTCAG GAATTGCATC TTTCCACTTC CTTTTTTTCA TGATGAAACA TGGCACGTAT
TTTACCGTAT GAAATGAGTT TTGTGATTAC TAACATACAA ATCCTGTCCT TTTGTGAACG CAGTAATAGT AATAAGATTT
CTGTCGAAAG TTAAAT

>Vigan.08G124300.01
ATGGCTTTGT GCCGATTCGC TTATTGTTCC CCTGCTTCAT CTGCTCCCAA ATTCATTCGT TTCCCGAAAT ACCCTTCAAA
ACACGTTAAA TTCTCTTTGC TGCCGTTCTC ATTCGCAACG ATGGAAGCTC CTCCAGAAGG TTACCGCAGG AACGTTGGTA
TCTGTCTCAT GAACGCTCAC AAGAAGATTT TCGCGGCTTC GAGGCTCGAC ATTCCCAATG CTTGGCAAAT GCCGCAGGGT
GGTATTGATG AAGGTGAGGA TCCAAGAAAT GCAGCTATCA GGGAATTAAG AGAAGAGACG GGAGTTAATT CGGCCGAAGT
GATCGCAGAG GTACCATATT GGTTAACTTA TGATTTCCCA CCGAAAGTGA GGGACAAATT AAATATTCAG TGGGGATCTG
ATTGGAAGGG TCAGGCACAG AAATGGTTTC TTTTAAAGTT CACTGGGCAA GATCAAGAAA TCAATCTTCT GGGTGATGGC
ACTGAGAAAG CTGAATTTGG GGAATGGTCA TGGATATCAC CTGAACAAAT AATTGATCTT GCAGTAGATT TCAAAAAGCC
TGTCTACAAG GAAGTCCTAG CAGAGTTTGC TCCATATTTC CAATAG

>Vigan.08G124300.01
MALCRFAYCS PASSAPKFIR FPKYPSKHVK FSLLPFSFAT MEAPPEGYRR NVGICLMNAH KKIFAASRLD IPNAWQMPQG
GIDEGEDPRN AAIRELREET GVNSAEVIAE VPYWLTYDFP PKVRDKLNIQ WGSDWKGQAQ KWFLLKFTGQ DQEINLLGDG
TEKAEFGEWS WISPEQIIDL AVDFKKPVYK EVLAEFAPYF Q*