GBrowse Details

Vigan.08G122800.01

Basic Information:
Name: Vigan.08G122800.01
Multiple alignment
Variant Information
Position: Chr08:10818519..10821437 (+ strand)
Length: 2919
Functional Information:
Description: Similar to Uncharacterized protein. [C6T0S9, Glycine max]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:129.45,55.90,3.79,2.91,2.83,4.28,5.67,4.48
Automatic updates:
Name: BT091034 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-6E6 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:10818519..10818813 (+ strand)
Length: 295
Type: five_prime_UTR
Position: Chr08:10818814..10818961 (+ strand)
Length: 148
Type: CDS
Position: Chr08:10820060..10820128 (+ strand)
Length: 69
Type: CDS
Position: Chr08:10820383..10820448 (+ strand)
Length: 66
Type: CDS
Position: Chr08:10820585..10820706 (+ strand)
Length: 122
Type: CDS
Position: Chr08:10820808..10820936 (+ strand)
Length: 129
Type: CDS
Position: Chr08:10821054..10821158 (+ strand)
Length: 105
Type: CDS
Position: Chr08:10821159..10821437 (+ strand)
Length: 279
Type: three_prime_UTR

>Vigan.08G122800.01 class=Sequence position=Chr08:10818519..10821437 (+ strand)
CGTGAACTCA ATCCAATCTC ATTCTTAATA AATTAAAAAA AAAAAGAAGA AAAAGTGCAC AAGGAAGAAA GAGGACATTT
GTCCTAACCA TTGTGAATTT TGATCTTCTG GACCAAACTC TCAACCGCCT GAGCTATCTT TCCAAACTCA CCTCTTTCTC
TCATATTCAA ACAAAAATCT TTGCTTTCTC AATTCTTCAT CCTTTTTCTT TTTCAATTCT TCACCCTGAA AAAGGGAGAG
ACAAGACAAT CATGGTCCAG TTTTGAATTA AGGTGGTAAA AGACAGAAAC AAAACATGGG TTCTGCTTCA AGAGTTGGCA
GTAGCAGCTA CGATTACTCC TTCAAGGTTC TTTTGATTGG TGATTCTGCT GTTGGCAAGA GTAGTCTTCT CCTCAGCTTC
ATCTCCAATT CTAACTCTAT CCATGATCTC TCCCCCACCA TTGGTACTTT CTTTTGTCTC TGTTCTGTGA ATTTGGCTTC
CTTTTTTCTT TCTTGCTTCG GAAAATGGAA CAGGGTGGCA CAGGATTGAA CTGTGTTCTT GCAAATTCAA CACCTTTATC
AAGACTTCTG TCAAACAATG ATGAGGGTCA ATCTTTTTGA AAACTTTTCA TTTAAAGTGT TTCATAGACT CATGCATTCT
TGTGGAAAGT GTTTATGGAG TCAAGTCAGT TTTCTTTCAG TTTTCAGATA TCTTTTGTGG ACCTTTTGGT CTTTTATATT
TTACTCTAAT TTATGGTTCC CTTTTATTTT TTATATCCGT ATCTTCTTGT TGGACCATAT TGCCAATTTT TATTCTTTGG
ATTTGGTTTG ACTTGTGCCG GATAAACACT TTGGTTAACC CATTTTGCGA ACAACTTTTC TGAATTGGGA AAAGAAATCT
CTTATAAGGT CTTCCTATAA TTGAAATTGG ACTTGGTCAT ATCTTAGAGA GGGTTTGATT TGTTTTTAAT TTCCATTAAG
TTGATATCCT TTTCCTAATA GCTACACCCG TACCTTGTTT TTTCAAAAGG TTTTCAAGAT TTTATTTTCA TTACATTTCA
AGATTCTGTT TCACCATTTT GTGAGTGAAA TTTTCTACCC AGAATCTTGA AAAACAATGT GGCATTTTTT TTTAATTATT
AGCAAAATTG ATATCAATTT CAAAAGAAAA CAGGAAAAGA ACTAAACGTC TGCTTAAGAT TTTTCGTGAT GAATGTCACA
TTCGTTGAAA TTTGCTAAAT CACCCATTTT TATTTTTTGA GGAATTTTAT TTTCATTATC AGTATCTTAT TTGAAAGTTG
AAGCAATTGA TCTTGTGCAT GCATACATAC GGTTAAATAG CGCAATTGTC TTGTGCGGTG ATACATTTAA CCTTCTTTGT
TCATGGTATT TTATTTGTCT CTTACAGTTG GTTATGATTT ATTATAATAT TGAGGCATTT GACTTTAAAC TTTATACTTT
CCATATGATT GAGTGGTTCA TAGCATAAGG AATTTTGCAG AGTAATTTGT TGTACCATCA CACTGTTACA TACTGAGCTG
TTGGTTCTTG AATCATTTAA GGTGTGGATT TCAAGATAAA GTTTTTCACA GTTGCTGGTA AGAGACTGAA GCTCACTATT
TGGGACACAG GTAACAGATT TATACTTTTT AATCATATTT TTGCTGAAGG ATTTTCTGAT GCGTATTTAT GCAGTGAAGA
ATTTTCCTTT TACTACCTCA GTTTTCTACT CACTGTGAAC ATTGTTGTAA TGATAATATT GCTTAATACG TGGTTAAGAA
TTAAATCATC AAGTTTGTGT GTATGCAATA AGAACTTAAA TAGGTTTCAC CTTGCAATGG TGAGTTGTCG TCAACGGATT
ATAACTTTGA TTTAATGTTT GCAGCTGGTC AAGAGAGGTT TGGAACAGTA ATAAGTTCTT ATTACAGAGG TGCACATGGA
ATCATTCTTG GTATTCTATC TATATCTATG TTCTTGAAAA TAATGCTTGT ACTTGCATGA ACATTTGCTT CTTTATGCTT
TTTCAGTATT GCCTTTAGTG TCTGCATCTA ATACCTTTTC TTTTTTTCTT TCTATTTTCT ATTTAGTCTA TGATGTGACA
CGACGCGAGA CATTTACAAA TCTCATCGAT ATATGGGCAA AAGAAGTTGA GCTTTACTCT ACTAATCATG ATAGCATCAA
AATTCTTGTT GGAAATAAGG TGGATAAGGT AAAAGACTGA AACCATAGAG CTTATGTATC TTTTTTCTCA TTGTTTTCTT
GCATTTCATT GTTTGGAATT TGAAGACTAT GAGTTGTGTT ATTTTTCAGG AGAGTGAAAG AGCCGTAAGC AAAGAAGAGG
GAATGGCTCT TGCACAGCAA CATAGATGCT TGTTCCTAGA GTGTAGTGCT AAAACTAGAG AAAATGTTCA GCAATGCTTT
AATGATCTCT CATTGAAGGT ATATATATAA TCATATCTGA TATTAAATTT CTTCTTTCTG TTCTTCATGT AATTCCTTAA
ATTTCCGACA ACATGTGACT TGCTAAATTT TTGTTCTTCC ATTTAACATT TACAGATATT AGATGTGCCA GGTTTAAGGG
AAAAGGGGTC TCTTGCAGTG AGAAGGCAAA ATCAAAAACA GTTGTATGAG ACATCTCAAA GAGGTGGTTG CTGTTCTTAG
TAAATATGCA GCACCATGAT ATGTTTAATA GATTTTTCAA TAGGGATACT ATAGTTACTA TAGCAGGGTT TTGTATCATA
TCAATTGTCA CATTCAGATA GTTTGGATGA TCATATGCTC CAGCCTATTT CCATAACTCT CACAAGAGGA TGCTTGAGAT
GGATATTTCC ATAATTTTGA ATTTTTAGTT TTATTATGTG ACATTTTTAC TTTCATGTTA GGTTCTTCTG GACAGGATTC
AAACTCTACC ACTTGTGACC ATATGTATAA AAGAAAAAT

>Vigan.08G122800.01
CGTGAACTCA ATCCAATCTC ATTCTTAATA AATTAAAAAA AAAAAGAAGA AAAAGTGCAC AAGGAAGAAA GAGGACATTT
GTCCTAACCA TTGTGAATTT TGATCTTCTG GACCAAACTC TCAACCGCCT GAGCTATCTT TCCAAACTCA CCTCTTTCTC
TCATATTCAA ACAAAAATCT TTGCTTTCTC AATTCTTCAT CCTTTTTCTT TTTCAATTCT TCACCCTGAA AAAGGGAGAG
ACAAGACAAT CATGGTCCAG TTTTGAATTA AGGTGGTAAA AGACAGAAAC AAAACATGGG TTCTGCTTCA AGAGTTGGCA
GTAGCAGCTA CGATTACTCC TTCAAGGTTC TTTTGATTGG TGATTCTGCT GTTGGCAAGA GTAGTCTTCT CCTCAGCTTC
ATCTCCAATT CTAACTCTAT CCATGATCTC TCCCCCACCA TTGGTGTGGA TTTCAAGATA AAGTTTTTCA CAGTTGCTGG
TAAGAGACTG AAGCTCACTA TTTGGGACAC AGCTGGTCAA GAGAGGTTTG GAACAGTAAT AAGTTCTTAT TACAGAGGTG
CACATGGAAT CATTCTTGTC TATGATGTGA CACGACGCGA GACATTTACA AATCTCATCG ATATATGGGC AAAAGAAGTT
GAGCTTTACT CTACTAATCA TGATAGCATC AAAATTCTTG TTGGAAATAA GGTGGATAAG GAGAGTGAAA GAGCCGTAAG
CAAAGAAGAG GGAATGGCTC TTGCACAGCA ACATAGATGC TTGTTCCTAG AGTGTAGTGC TAAAACTAGA GAAAATGTTC
AGCAATGCTT TAATGATCTC TCATTGAAGA TATTAGATGT GCCAGGTTTA AGGGAAAAGG GGTCTCTTGC AGTGAGAAGG
CAAAATCAAA AACAGTTGTA TGAGACATCT CAAAGAGGTG GTTGCTGTTC TTAGTAAATA TGCAGCACCA TGATATGTTT
AATAGATTTT TCAATAGGGA TACTATAGTT ACTATAGCAG GGTTTTGTAT CATATCAATT GTCACATTCA GATAGTTTGG
ATGATCATAT GCTCCAGCCT ATTTCCATAA CTCTCACAAG AGGATGCTTG AGATGGATAT TTCCATAATT TTGAATTTTT
AGTTTTATTA TGTGACATTT TTACTTTCAT GTTAGGTTCT TCTGGACAGG ATTCAAACTC TACCACTTGT GACCATATGT
ATAAAAGAAA AAT

>Vigan.08G122800.01
ATGGGTTCTG CTTCAAGAGT TGGCAGTAGC AGCTACGATT ACTCCTTCAA GGTTCTTTTG ATTGGTGATT CTGCTGTTGG
CAAGAGTAGT CTTCTCCTCA GCTTCATCTC CAATTCTAAC TCTATCCATG ATCTCTCCCC CACCATTGGT GTGGATTTCA
AGATAAAGTT TTTCACAGTT GCTGGTAAGA GACTGAAGCT CACTATTTGG GACACAGCTG GTCAAGAGAG GTTTGGAACA
GTAATAAGTT CTTATTACAG AGGTGCACAT GGAATCATTC TTGTCTATGA TGTGACACGA CGCGAGACAT TTACAAATCT
CATCGATATA TGGGCAAAAG AAGTTGAGCT TTACTCTACT AATCATGATA GCATCAAAAT TCTTGTTGGA AATAAGGTGG
ATAAGGAGAG TGAAAGAGCC GTAAGCAAAG AAGAGGGAAT GGCTCTTGCA CAGCAACATA GATGCTTGTT CCTAGAGTGT
AGTGCTAAAA CTAGAGAAAA TGTTCAGCAA TGCTTTAATG ATCTCTCATT GAAGATATTA GATGTGCCAG GTTTAAGGGA
AAAGGGGTCT CTTGCAGTGA GAAGGCAAAA TCAAAAACAG TTGTATGAGA CATCTCAAAG AGGTGGTTGC TGTTCTTAG

>Vigan.08G122800.01
MGSASRVGSS SYDYSFKVLL IGDSAVGKSS LLLSFISNSN SIHDLSPTIG VDFKIKFFTV AGKRLKLTIW DTAGQERFGT
VISSYYRGAH GIILVYDVTR RETFTNLIDI WAKEVELYST NHDSIKILVG NKVDKESERA VSKEEGMALA QQHRCLFLEC
SAKTRENVQQ CFNDLSLKIL DVPGLREKGS LAVRRQNQKQ LYETSQRGGC CS*