GBrowse Details

Vigan.08G113300.01

Basic Information:
Name: Vigan.08G113300.01
Multiple alignment
Variant Information
Position: Chr08:9780801..9783639 (+ strand)
Length: 2839
Functional Information:
Description: Similar to Uncharacterized protein. [C6T3I8, Glycine max]
GO: Biological Process: ATP hydrolysis coupled proton transport (GO:0015991)
Cellular Component: proton-transporting two-sector ATPase complex, proton-transporting domain (GO:0033177)
Cellular Component: proton-transporting V-type ATPase, V0 domain (GO:0033179)
Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078)
InterPro: V-ATPase proteolipid subunit (IPR000245)
V-ATPase proteolipid subunit C-like domain (IPR002379)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:53.51,24.64,19.74,15.53,11.41,28.47,14.35,19.50
Automatic updates:
Name: NM_001249089 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527177 (LOC100527177), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:9780801..9780979 (+ strand)
Length: 179
Type: five_prime_UTR
Position: Chr08:9780980..9781104 (+ strand)
Length: 125
Type: CDS
Position: Chr08:9781194..9781271 (+ strand)
Length: 78
Type: CDS
Position: Chr08:9782878..9783048 (+ strand)
Length: 171
Type: CDS
Position: Chr08:9783159..9783327 (+ strand)
Length: 169
Type: CDS
Position: Chr08:9783328..9783639 (+ strand)
Length: 312
Type: three_prime_UTR

>Vigan.08G113300.01 class=Sequence position=Chr08:9780801..9783639 (+ strand)
CTAACATTAC TCTCGGCCAC GTGGCCATGT TATGGTCACG TTGATTATTC ACATTAATTC AATATTATCT AAACGACACT
GCGTTTCGTC CATTCCAATT TGGCTCCGTG GTTAACCGAA CAACTCAGAG ATCCAGTCAC AAACATTCAT CGATTCCCTT
CCGTTAGCAA CACGTCACAA TGTCTGAGAC GATTGTGGCA CATTCGAGTT CTTGGAGCAG GGCACTTGTC GCGATCTCGC
CCTATACCTT CTCCGCCATC GGTATCGCGG TCGCAATCGG CGTCTCCGTC CTCGGCGCCG CCTGGTAAGC CTTCGATATC
CGTTTTTCAG TTTCCCTTTC GGCTTCCATT TACATTGTTC TCAGTTCTGG AATCGCTTCG CCCACGCTTT CAGGGGGATC
TACATCACCG GTAGTAGCTT GATCGGCGCT GCAATCAAGG CTCCTCGAAT CACTTCCAAA AATCTCATTA GGTAAAACTA
ATTGCAATTT GTTTGCACCG TTTTTTTTAG TTTATGCATT TAATTGGACT ATGTATATTT AATTTAGGTG TTTCCTTTTT
TTTACAGTAA TTTTTTGTAC TGAATTATGT TGTTGAGAAA TTTTACGGTA GTGGAAGTCT ATGTTTCTGT TGATTTTACC
TTGATTTCTG TAGTTCTAGG TTAGCTTCGT TCGTTTAGAT TAGGAGATTA CATTTCTTAG CTTTGCTTCG GTTAAGGATT
TGAAGTTGGA GAGGAATTGT TAGTTGTTGT AAGTAGGGGA GGATTGTAGC AGCTCTGTGT TAGAGTTTAC AAATTACAAC
TGCACGGTGG CTGTTCTCAG CTTTCACACA CACAAAACAG TGGTCGACAA AGGTTTTTTT TTTAATATTT GTTTTAATGC
TTCTGAAAGG AAAAGAAAAT TGTTGTGATG AAATGAAGTC TTTGATGTTG AGGAATCAGT CTAGAATTCC TCTTCTGTCA
GTGACTCCTA CTGGATCTTT ATTCAACGAT GTTACTTTAT TGGTGGCTTA ATGCTCGTTT CTGTGGCAAA TAGCTATTTA
CTGGTAGTAA AATTGTGACA CCTGTGATTT AGTTTTGAGT ATGAGGTGAT TTTACTGGGT AGGGCATTAG TCTTCCCCCA
CATAAGAAGC AGTGATAATC TTTCTTCATC ATTGGGAGTG AGTAAGGGAT CGTATGGTCT GAAGCCTACT GGGTTATTGA
ATAACTATCT AATACATGAA AAAAGAAAGA AAGATATAGA GAGCTTCTTG CACTGAATTT TATTCTCCAT TTCAACCTCC
GTCTATTTTT TTTTTCAGAG GTCAGATGCA AAAGCTGAAA GATTAATACT GATATTTTAA TTTCAAATAA AGGAGAATGC
TTTGAAGTTT ATTTTTTCTT GACAAGGTAA GAATTCTCAT GTGCATATTA TGTCTGGTTT TTTGGCTAGA GAGATTGCTT
GTACCCTTTT TCAAGTCAAT CTGGAATAAA CACTCTAACT TCTCAACTTC AATACTTCAA TATTGTCGAT TTTGGTCGAG
CCTGGTTTAC CACTAAGTGG CATTGAAGTT GGAGTGGTAA TTATTTATTT TTCTATGTCA ACATTGTTCA CAGTCTCACT
GGACCTCCGT TTGTGTGCTT TGTTTATTCT TGGGATTATT ATGCCAGCTC AAGTAAGGCT CTCAAAAGTT AGTTTACCTG
GGAAGGCAAT TACGGTTGAG CTCAATATCT TTTCTTTCGG CTTTTAGTTC TTTTTTCTCT CAATTATGTA GAGATTTTAG
TTTTATTAGC TCTATCAAAA AGATTTTTTA TTATAAGCTG TGTTGAATAC ATAATAAACT AATTCGTACT TAATCATTTA
ATAATGATTG ATTGACCCAA CTTACAGTGT AAAATAAGTT GTTAGACCCT GTTTTAATGT GAATATATAA AAAATCGTTC
TTAATTTAAG ATTGTTCTAT TTGAATACTA TGAATGTTAA TGTTCCGTTT TGCATGTAGT ATCTGCATAA TAGTATCCCA
GTATGGCTGA TATAGTTTCA AATATAAACA TTTGTGCCAT CTTGTCATTG TGGTTCGTGA TGTTTGTTGT ATTTCAGTGT
AATCTTCTGT GAAGCTGTTG CTATATATGG TGTTATTGTG GCTATTATTC TTCAAACAAA ATTAGAAAGC GTTCCAGCAG
CAAATATCTA TGACCCAGAG TCTCTTAGGG CTGGATATGC AATCTTTGCT TCTGGATTAA TCGTGGGCTT CGCAAATCTT
GTTTGTGGGT GTGTATTCTT TGTTACCCTA CCTCTCATTT TTGCAGGAAA CTCTCCCGAT GAGTGCAGGG TGACCTTTTC
CATGCTGTTG TGACATTCAA TTTTTCCCCC TCTGGCAGGT TGTGTGTAGG AATAATTGGA AGCAGCTGTG CATTATCTGA
TGCTCAGAAT TCCTCCCTCT TCGTGAAAAT TCTTGTGATT GAGATCTTTG GTAGCGCGCT TGGGCTATTT GGAGTGATTG
TTGGAATTAT TATGTCAGCA CAAGCAACAT GGCCAACCAA AGTTTAGTTT CCACTTTATC AGAATGTGGT GTGGGAATGC
AATTATGGTA GAGCGCAATA TATCTTCTGT ACTGCTCGGG ATTAAATTTT TCTGTTTCCT GTTGGTAGGA ATGTAAAATC
CAGCGTAATA GTTTACCTTC ATTACAAATG TAGGCTGTAT TATTTACAAA TGAGTTGTTA GCAGGTCTTG TGTATCGTCA
GATATGTCAG TCTGTTGGTT GAATTTCAAT GTTTTTGGAG GACCAAATCT TTTATAATCA ATAAGAAAAT TGAATTTATT
TGGGCTTGTG AATAAAGTCA ACTAGCAGTT TTTTTGAAA

>Vigan.08G113300.01
CTAACATTAC TCTCGGCCAC GTGGCCATGT TATGGTCACG TTGATTATTC ACATTAATTC AATATTATCT AAACGACACT
GCGTTTCGTC CATTCCAATT TGGCTCCGTG GTTAACCGAA CAACTCAGAG ATCCAGTCAC AAACATTCAT CGATTCCCTT
CCGTTAGCAA CACGTCACAA TGTCTGAGAC GATTGTGGCA CATTCGAGTT CTTGGAGCAG GGCACTTGTC GCGATCTCGC
CCTATACCTT CTCCGCCATC GGTATCGCGG TCGCAATCGG CGTCTCCGTC CTCGGCGCCG CCTGGGGGAT CTACATCACC
GGTAGTAGCT TGATCGGCGC TGCAATCAAG GCTCCTCGAA TCACTTCCAA AAATCTCATT AGTGTAATCT TCTGTGAAGC
TGTTGCTATA TATGGTGTTA TTGTGGCTAT TATTCTTCAA ACAAAATTAG AAAGCGTTCC AGCAGCAAAT ATCTATGACC
CAGAGTCTCT TAGGGCTGGA TATGCAATCT TTGCTTCTGG ATTAATCGTG GGCTTCGCAA ATCTTGTTTG TGGGTTGTGT
GTAGGAATAA TTGGAAGCAG CTGTGCATTA TCTGATGCTC AGAATTCCTC CCTCTTCGTG AAAATTCTTG TGATTGAGAT
CTTTGGTAGC GCGCTTGGGC TATTTGGAGT GATTGTTGGA ATTATTATGT CAGCACAAGC AACATGGCCA ACCAAAGTTT
AGTTTCCACT TTATCAGAAT GTGGTGTGGG AATGCAATTA TGGTAGAGCG CAATATATCT TCTGTACTGC TCGGGATTAA
ATTTTTCTGT TTCCTGTTGG TAGGAATGTA AAATCCAGCG TAATAGTTTA CCTTCATTAC AAATGTAGGC TGTATTATTT
ACAAATGAGT TGTTAGCAGG TCTTGTGTAT CGTCAGATAT GTCAGTCTGT TGGTTGAATT TCAATGTTTT TGGAGGACCA
AATCTTTTAT AATCAATAAG AAAATTGAAT TTATTTGGGC TTGTGAATAA AGTCAACTAG CAGTTTTTTT GAAA

>Vigan.08G113300.01
ATGTCTGAGA CGATTGTGGC ACATTCGAGT TCTTGGAGCA GGGCACTTGT CGCGATCTCG CCCTATACCT TCTCCGCCAT
CGGTATCGCG GTCGCAATCG GCGTCTCCGT CCTCGGCGCC GCCTGGGGGA TCTACATCAC CGGTAGTAGC TTGATCGGCG
CTGCAATCAA GGCTCCTCGA ATCACTTCCA AAAATCTCAT TAGTGTAATC TTCTGTGAAG CTGTTGCTAT ATATGGTGTT
ATTGTGGCTA TTATTCTTCA AACAAAATTA GAAAGCGTTC CAGCAGCAAA TATCTATGAC CCAGAGTCTC TTAGGGCTGG
ATATGCAATC TTTGCTTCTG GATTAATCGT GGGCTTCGCA AATCTTGTTT GTGGGTTGTG TGTAGGAATA ATTGGAAGCA
GCTGTGCATT ATCTGATGCT CAGAATTCCT CCCTCTTCGT GAAAATTCTT GTGATTGAGA TCTTTGGTAG CGCGCTTGGG
CTATTTGGAG TGATTGTTGG AATTATTATG TCAGCACAAG CAACATGGCC AACCAAAGTT TAG

>Vigan.08G113300.01
MSETIVAHSS SWSRALVAIS PYTFSAIGIA VAIGVSVLGA AWGIYITGSS LIGAAIKAPR ITSKNLISVI FCEAVAIYGV
IVAIILQTKL ESVPAANIYD PESLRAGYAI FASGLIVGFA NLVCGLCVGI IGSSCALSDA QNSSLFVKIL VIEIFGSALG
LFGVIVGIIM SAQATWPTKV *