GBrowse Details

Vigan.08G109700.01

Basic Information:
Name: Vigan.08G109700.01
Multiple alignment
Variant Information
Position: Chr08:9331581..9333909 (+ strand)
Length: 2329
Functional Information:
Description: Similar to Uncharacterized protein. [I1NHH2, Glycine max]
GO: Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, DNL-type (IPR007853)
Mitochondrial import protein TIM15 (IPR024158)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:99.45,84.73,6.56,12.48,11.73,19.00,26.47,10.23
Arabidopsis thaliana homolog: AT3G54826.1
Automatic updates:
Name: NM_001249923 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527239 (LOC100527239), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:9331581..9331728 (+ strand)
Length: 148
Type: five_prime_UTR
Position: Chr08:9331729..9331816 (+ strand)
Length: 88
Type: CDS
Position: Chr08:9333061..9333554 (+ strand)
Length: 494
Type: CDS
Position: Chr08:9333555..9333909 (+ strand)
Length: 355
Type: three_prime_UTR

>Vigan.08G109700.01 class=Sequence position=Chr08:9331581..9333909 (+ strand)
ATTTGAAGCA CAAAAGATGA GAGGGGGAGT GGATTCAACA AGTGGGGGAG TGTAACAGTA AAGGCCTATA AGAAAAGACA
GATCCCAAAA TTCATAGAAA CTAAGAAGAG CCCAAAATCT CAGAAAGTAA CAGGTTTGGG CATTACCCAT GGCCTTGGGA
GCTATGGCGG CAAGGATGTT GCAGAGGCGA TTCATCTCAA TCTTCCCGAG ACAAACCTAT CACCCCATTA TTCAAGGCAT
GTCCCCACCT TTATTTTCCG ATTTCTCTCC ACAGTTCTGT GTCTCTCTCT CTTTGCGTTC TTTTAGATCC TCTCAACTCA
ATACTAAGCA TCTTCCACCC CTTTTTTCTT CTTCAATTTA ACCCTTTTTT TCAATGTTAA GTCCTGGTTT TGAAGTTTTG
ATAACTAAAT TTAATAGACT GAAAATTGTA AAAGTTACTT GTTTCTGGTT TGCTGAATTG TCTTTAGGAT GGACTTTCCA
AACTTCTCAA ATTTGAATTT TTTAGTTTAT TCTATGTTTA CTTTGTTAAT TTCTTTTGGG AATTATTTTA TCCGTAGAGC
TTCTTATGAC TGGTTCTGAA ATTCGTTGCC AATTATGTTT TCAGGGATTT GTTTATTTAT TTCTTTGTCG GAACTGAACA
TGGATACCTA GAGTTTATGA CAATTCGCAC ACGTTATGCA ACTAACTGAA CCGACCAGAC TCTTAAGTTG TTTTGAGGGA
TTCTTGACTG CTTTGGTTTG ATACCTTGAT GGTTCTGTCT TTCTTTGTCA TAACTTAACA CTTTTGGGTC ATTGAAATAT
CTTTTTCATT TAGTTTTAGT TTTACACGAA TCTTAATAAA AGTCTTTTAG CATTAATTAA GGAATTAGGA GGGTCAGGAA
AATGTCTCAA AAGCAATAAA AGACATTTAC AGCATCACAA GTTTTTACTT AATCCTAAGA TACATCGTTG GGCAATTCTT
TTTAACAATA AGTGTTAATA TGGAAATTGA AGCGCCAGAT GTTGAATAAC AAATAGATTA GTGTAATTAC CTGTAAATAT
TCTTTTATAT AGGTTATCTA TTTATTTTTG AATTAATACA CGATCCGAAT TAGCTTTCCA CTTCTTTGAT GTAGTTCAAA
GGAATTGAAT ACGCAATGAA GGTTTATGCT ATATATAAAT AGATTTTATC TCATGCATCT TCTATAATGC AAAACAGTGT
TTTCTGAATA ACAGGAAAAA GTGGATGTTG TTAATTTTGA TTTGGACTTA CTCTGATTAA TCTTTATCTG GTGTCTCCCT
CTCTGTGGCA GAATATCAGT ATGTTTATGC TTAATATTTG TAGTTAAAGT CATTCTTTAA TCATTCAGTT AATAGCATAA
GTTTATGCTA TATAAAAGAT GAAGAGCTTC TTTCTATTTC TCTCTCACTT TCTCTTTGTG CATTCCCTTG TCTGTGAAAA
GAAAGTTTTT GGTATTAATG TGAATGTTGT TTACTGGCAG AATCTTCTTG GTATTATCCT ACTGGTGCAA TATTAAACAG
ATTTGGATTC CATCAAAGGG GGGTCGCTAC AACTACAAAT CCAATCAAAC CTGTTTGTGA AGATGTAGAA AATAGTGAAA
CTGACACCTT AAAACTAAGT CCAAACCCTG ATAATGTTGC TACATCCATT AGTGTTAATG ATGCCTCTGT ACAGTTTTCT
GCCAAGTCAA GTTTGAAGAC ATCTTCAAGG CATGATCTCG CCATGATTTT CACCTGCAAG GTGTGTGAAA CGAGATCCAT
TAAGACAGTT TGTCGTGAGT CATACGAGAA AGGTGTAGTG GTGGCAAGAT GTGGGGGGTG TAATAACCTT CACCTGATTG
CAGATCACCT TGGGTGGTTT GGTGAACCAG GAAGCGTTGA AGACTTCTTG GCTTCTCGTG GAGAAGAAGT GAAAAGAGGT
TCAGCTGACA CACTGAATCT TACGTTGGAA GATTTAGCTG GAAAACAACC TTGAAAGCTA CACTCTCACC TAGTATGTGT
TCTGCAATAG GGTGTCACAG AATGTTTGGA AGTGCAAGTC AGTGTAACGA TAGTTGATAA GAGCAATCTT AGTAAGACAC
TCTTTTGAGC AAAATATTTT TTATTCCTCG AAATTTCTAA TTACTAAATT TTGGAGATGT CATTTCGTAT AAAACAGTTT
CATGATGTTT TGTTCTTTTA GATAAAAAAA TTGTTCTAAA GTTAAGCTTG GGATGATGGT AAGGTGTCTT TGACTTTGGG
GCATGTGGTA CCGAGGAGTG TTCTTTAGCT TGACAATTCT TAATACTGGT TAATAACCAT TATGACCCAT AAATAATGAA
AAAATAAGC

>Vigan.08G109700.01
ATTTGAAGCA CAAAAGATGA GAGGGGGAGT GGATTCAACA AGTGGGGGAG TGTAACAGTA AAGGCCTATA AGAAAAGACA
GATCCCAAAA TTCATAGAAA CTAAGAAGAG CCCAAAATCT CAGAAAGTAA CAGGTTTGGG CATTACCCAT GGCCTTGGGA
GCTATGGCGG CAAGGATGTT GCAGAGGCGA TTCATCTCAA TCTTCCCGAG ACAAACCTAT CACCCCATTA TTCAAGAATC
TTCTTGGTAT TATCCTACTG GTGCAATATT AAACAGATTT GGATTCCATC AAAGGGGGGT CGCTACAACT ACAAATCCAA
TCAAACCTGT TTGTGAAGAT GTAGAAAATA GTGAAACTGA CACCTTAAAA CTAAGTCCAA ACCCTGATAA TGTTGCTACA
TCCATTAGTG TTAATGATGC CTCTGTACAG TTTTCTGCCA AGTCAAGTTT GAAGACATCT TCAAGGCATG ATCTCGCCAT
GATTTTCACC TGCAAGGTGT GTGAAACGAG ATCCATTAAG ACAGTTTGTC GTGAGTCATA CGAGAAAGGT GTAGTGGTGG
CAAGATGTGG GGGGTGTAAT AACCTTCACC TGATTGCAGA TCACCTTGGG TGGTTTGGTG AACCAGGAAG CGTTGAAGAC
TTCTTGGCTT CTCGTGGAGA AGAAGTGAAA AGAGGTTCAG CTGACACACT GAATCTTACG TTGGAAGATT TAGCTGGAAA
ACAACCTTGA AAGCTACACT CTCACCTAGT ATGTGTTCTG CAATAGGGTG TCACAGAATG TTTGGAAGTG CAAGTCAGTG
TAACGATAGT TGATAAGAGC AATCTTAGTA AGACACTCTT TTGAGCAAAA TATTTTTTAT TCCTCGAAAT TTCTAATTAC
TAAATTTTGG AGATGTCATT TCGTATAAAA CAGTTTCATG ATGTTTTGTT CTTTTAGATA AAAAAATTGT TCTAAAGTTA
AGCTTGGGAT GATGGTAAGG TGTCTTTGAC TTTGGGGCAT GTGGTACCGA GGAGTGTTCT TTAGCTTGAC AATTCTTAAT
ACTGGTTAAT AACCATTATG ACCCATAAAT AATGAAAAAA TAAGC

>Vigan.08G109700.01
ATGGCCTTGG GAGCTATGGC GGCAAGGATG TTGCAGAGGC GATTCATCTC AATCTTCCCG AGACAAACCT ATCACCCCAT
TATTCAAGAA TCTTCTTGGT ATTATCCTAC TGGTGCAATA TTAAACAGAT TTGGATTCCA TCAAAGGGGG GTCGCTACAA
CTACAAATCC AATCAAACCT GTTTGTGAAG ATGTAGAAAA TAGTGAAACT GACACCTTAA AACTAAGTCC AAACCCTGAT
AATGTTGCTA CATCCATTAG TGTTAATGAT GCCTCTGTAC AGTTTTCTGC CAAGTCAAGT TTGAAGACAT CTTCAAGGCA
TGATCTCGCC ATGATTTTCA CCTGCAAGGT GTGTGAAACG AGATCCATTA AGACAGTTTG TCGTGAGTCA TACGAGAAAG
GTGTAGTGGT GGCAAGATGT GGGGGGTGTA ATAACCTTCA CCTGATTGCA GATCACCTTG GGTGGTTTGG TGAACCAGGA
AGCGTTGAAG ACTTCTTGGC TTCTCGTGGA GAAGAAGTGA AAAGAGGTTC AGCTGACACA CTGAATCTTA CGTTGGAAGA
TTTAGCTGGA AAACAACCTT GA

>Vigan.08G109700.01
MALGAMAARM LQRRFISIFP RQTYHPIIQE SSWYYPTGAI LNRFGFHQRG VATTTNPIKP VCEDVENSET DTLKLSPNPD
NVATSISVND ASVQFSAKSS LKTSSRHDLA MIFTCKVCET RSIKTVCRES YEKGVVVARC GGCNNLHLIA DHLGWFGEPG
SVEDFLASRG EEVKRGSADT LNLTLEDLAG KQP*