GBrowse Details

Vigan.08G105300.01

Basic Information:
Name: Vigan.08G105300.01
Multiple alignment
Variant Information
Position: Chr08:8840057..8843192 (+ strand)
Length: 3136
Functional Information:
Description: Similar to Vacuolar ER assembly factor, Vma12, putative isoform 1. [XP_007019880.1, Theobroma cacao]
InterPro: ATPase, vacuolar ER assembly factor, Vma12 (IPR021013)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:109.53,54.40,22.27,31.48,59.81,18.10,20.60,22.88
Arabidopsis thaliana homolog: AT5G52980.1
Automatic updates:
Name: NM_001251293 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499678 (LOC100499678), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:8840057..8840212 (+ strand)
Length: 156
Type: five_prime_UTR
Position: Chr08:8840213..8840476 (+ strand)
Length: 264
Type: CDS
Position: Chr08:8840614..8840752 (+ strand)
Length: 139
Type: CDS
Position: Chr08:8842524..8842609 (+ strand)
Length: 86
Type: CDS
Position: Chr08:8842730..8842891 (+ strand)
Length: 162
Type: CDS
Position: Chr08:8842892..8843192 (+ strand)
Length: 301
Type: three_prime_UTR

>Vigan.08G105300.01 class=Sequence position=Chr08:8840057..8843192 (+ strand)
GAAAACTTGC AAGTTTCTTT TTTTTCTTAT TTTTCATAAA ACAAGAAAGA AAAAGTACCC TCTACGCGAG GAAAGCAGCC
ACTCTGCGTC TGCAGTGAAG ATAGTATTTA GCTGGTGAAT GGAGTGCTGG AAACAGTAGT AGCAGAGAAT CCAGCAATGG
GTACCGACAA GCCAAACCGG GTCGGGTTGA TTATATCCAC CACACCCTTG ATTCGGGGTT TCCTCTCCGA TGCGTCAAAA
GACGCGAGTC TTTCCGATGA ACTTCGACAA GCATCCTCCG ACCTGCTCCT CCAATCGGAG GTACCCTACG CCGCACTTCG
TGCTGTGTGG ATGTCCTCTG ATCCATCCAC CAGACCCGAC TTGACCCGAC TTTTTTCGGG CACCCGTTTC ATCTTCTCCA
GCCCTAAGCC CAGGGAGAAG GTTAGTTTTC TATTCCTACT CTCTGTTTCA ATTTCCCAAT TTCTAATTCT CTTCAATTAT
GATTACGTCT TGTTTCGGTG GCTCCAAAAT TTGTTGATCG ATTCAATTTT ATGTTTAACA TTGTTATTGG TGTGAAGAGT
GAAGAATTGA AAGCGAGGCT GAGAAAGCTG GAAGATTTAG CGGAGCGGAA AGCGTATCAA GAACTTGTGA AGGATATTGC
ACCGCCTAAG GATGTTCCGG AACCATTTTC TTCTTACAAG GATCAATTAG GGTTTGGTAA ATTCTTCTTC ACTTTAGTTT
ACCATGTTGA TACATGTAAG AAATGAATTT TAATTACAAT GCACTAATCA CTGTGGATGT TAAGATATTG ACTTTTACCA
TAATTTCAAT GCACTGATCA CTGTTGACGT TAACATATTG ACTTTCATCA TAATTATAGT GCATTAATCA CTCTTGATGT
TAAGATATCG ACTTTTGTCC TAACAAATTT ACAAGCTATA TCTGGAGCAG TTTCTAATTT GTTGGCAACG TAAAATCTTT
GCTATGTATC GAATGAAAAT TAAACTAATG GCCGTTACTT GTTGAAACTT TGATGCTTAA TTTGCTCATT TAGTTTGAAC
ACCCTTTGCT AGATTGGGTA GGTTATTTTG CTTTATGATC TCATTTGACA GTACCAGGTT TTGTCCCTTA TTTTTCTCAT
TTAGTTTGAA CACCCTTTGC TAGATTGGGT AGCTTATTTT GCTTTACAAT CTCATTTCAC AGTACCAGGT TTTGTTGCTG
AACCAAGTTA TCTCAAACAT TGTAATTCAG ATTGGCTTCG AAGTTCTTAT AATTTTTACA AAATTATTTG TATTGCTGCA
AAATGTAACT TGAATGCAGT CTAATATTGG GTGTAATTGC TTGTTTTATG TACATCCATG GTAATATGTT TATTTCTTTA
TGTTTCCCAA TTGAACTGGA CAGTGGAAGA AATAATGTTT GTATGAAAGT AGTAAAGAGA AACGCATAGG GAAGTGAAAA
GGAGATATTA CATTTTATTG ATCTTCATCT TTTGTTATGC ATTATTGAAT ATATGACACT TCATGCATAG ATGTTGCCTC
CGGCCTTTCT TTTCCAATGC TTGTTAATGT TAACCACACG TGAAGAAATA TTCTTCTGGC ATTGATACTG AGATCTTCTC
TGCCTCTTTT CCTGTCTTCA GTGGAATTGA TTTCTGTTTG GATAGGCTAT TGATGGTACT GATGGATTAA TGATTACGTT
ACTTATATGT ACATACTACA GACTGCGACA CTTATTGTAT ACATAGTCAC AAGGTATTCA TACTTGAGTT TGTTAAATAT
AGGAAAGAGA GAGACATTAA GTTGAAACAG TGTGTTTTTT AGACAAAGAA TAAATAAAAT TAATATAGGA GATTTAATAT
CCTGTAATTG TACATATATA ATCTAGATTT TCTTGATTAT GTTTGATCTG CTCTTTATTT GTATAATAGT AACAGAATTT
GATTTCAATC TTTTTGTTAG TATAAAGGGA TTTATGTTGT CATCCAATTA GAAATTACTC TGGATATGAT TTTTTTTGTT
ATTACAAAAG CGGAAAATTT TTTATCCTAC ATGTAGTTTT TATGAATCTA CAGTTTTGAT GGTTGAAAAT AAAACTGAAG
AGCTGTGTAC ATATGCTTCA GTTGTGCTTT AGGTAGTTCA TTTTTATATT TACCTTTCCC AAGGTAACTT GTAATCCTTA
TGATAACATA TACTGATTTT TTCTGCTGGT GGCGGTTAGT AAGTAATATA ATACCTTCAA TTTTCTTATG CTGGAAGACT
TTTCTTTGGC TATTATCGGA GTAGTGGTGT TAATTGAAAG TTATCCTCTT GTACTCTCAC AAAGATATAG AGAAATTAAA
ATTAGATGAC AGAAATCTTT AGTCTTTTTT CCTCCTGTAT TTTCTAGGGA TGTGATTTGA CACATTTAGT ATCTCTTTTG
TCACATTTAT ATAATGTTTG TGCTCTGAAG TAAGCTCTAT TTGATATATT TTTTTTTAAT TTTCCAGGTT TACATGTTGT
GGTTACCATG TTTACTGGCT ATCTTCTAGG ATATGCTGCA TTTAGAGCCT TGTTTAATCA CAGTCCTGCC ATGGTACTGT
CTAAATATGC TTTTCATTGT CATTATCGTC GATTAGTGTT TTAGTTTTGA GCTTTCATCA TCTCTTAATT CCTTTCTTTC
CTTCCTTCCT TCCTGTGTTG TCTCTATTTC CAGAATGCTG CTGGAGGAAT TCTGGGGTTG GTTGGTGCCA TGTTTGTTGA
AACTTTCCTT TTCATTATTA GAAGTTCAAA TGCAGATACC AACAGAACAA AAAAATTCAG TCAAAAATCA AGATCATCCT
TTTCAACACC CAGTTCTGCT AAGAAAAATC AGTAGAAGTA TCAGGTTGGT TATTTTACAC TTTTAAGAAA TATCATCGTT
CTGAGTTCCA GATAATTTAG AAGTGTGATA ACTCATGGCA AGCCCTTTGT CTTCTATGCA AAAACGTGAA TATTGTTGCC
TCTGAGGATC TTAAGTACGA ACACTTGTAA ACAGTAGCCA AATAGTATGA GAACTATGTT AGATGTCTTT ATATCAGATA
TTGAATAAAC ACTTCAATGT TTGTAATTGT AATTTTATAT TTTTTACACT TTCATTTTCT ACAACTTTTT ATTGATACTA
TTTTGAATAC CAGAGT

>Vigan.08G105300.01
GAAAACTTGC AAGTTTCTTT TTTTTCTTAT TTTTCATAAA ACAAGAAAGA AAAAGTACCC TCTACGCGAG GAAAGCAGCC
ACTCTGCGTC TGCAGTGAAG ATAGTATTTA GCTGGTGAAT GGAGTGCTGG AAACAGTAGT AGCAGAGAAT CCAGCAATGG
GTACCGACAA GCCAAACCGG GTCGGGTTGA TTATATCCAC CACACCCTTG ATTCGGGGTT TCCTCTCCGA TGCGTCAAAA
GACGCGAGTC TTTCCGATGA ACTTCGACAA GCATCCTCCG ACCTGCTCCT CCAATCGGAG GTACCCTACG CCGCACTTCG
TGCTGTGTGG ATGTCCTCTG ATCCATCCAC CAGACCCGAC TTGACCCGAC TTTTTTCGGG CACCCGTTTC ATCTTCTCCA
GCCCTAAGCC CAGGGAGAAG AGTGAAGAAT TGAAAGCGAG GCTGAGAAAG CTGGAAGATT TAGCGGAGCG GAAAGCGTAT
CAAGAACTTG TGAAGGATAT TGCACCGCCT AAGGATGTTC CGGAACCATT TTCTTCTTAC AAGGATCAAT TAGGGTTTGG
TTTACATGTT GTGGTTACCA TGTTTACTGG CTATCTTCTA GGATATGCTG CATTTAGAGC CTTGTTTAAT CACAGTCCTG
CCATGAATGC TGCTGGAGGA ATTCTGGGGT TGGTTGGTGC CATGTTTGTT GAAACTTTCC TTTTCATTAT TAGAAGTTCA
AATGCAGATA CCAACAGAAC AAAAAAATTC AGTCAAAAAT CAAGATCATC CTTTTCAACA CCCAGTTCTG CTAAGAAAAA
TCAGTAGAAG TATCAGGTTG GTTATTTTAC ACTTTTAAGA AATATCATCG TTCTGAGTTC CAGATAATTT AGAAGTGTGA
TAACTCATGG CAAGCCCTTT GTCTTCTATG CAAAAACGTG AATATTGTTG CCTCTGAGGA TCTTAAGTAC GAACACTTGT
AAACAGTAGC CAAATAGTAT GAGAACTATG TTAGATGTCT TTATATCAGA TATTGAATAA ACACTTCAAT GTTTGTAATT
GTAATTTTAT ATTTTTTACA CTTTCATTTT CTACAACTTT TTATTGATAC TATTTTGAAT ACCAGAGT

>Vigan.08G105300.01
ATGGGTACCG ACAAGCCAAA CCGGGTCGGG TTGATTATAT CCACCACACC CTTGATTCGG GGTTTCCTCT CCGATGCGTC
AAAAGACGCG AGTCTTTCCG ATGAACTTCG ACAAGCATCC TCCGACCTGC TCCTCCAATC GGAGGTACCC TACGCCGCAC
TTCGTGCTGT GTGGATGTCC TCTGATCCAT CCACCAGACC CGACTTGACC CGACTTTTTT CGGGCACCCG TTTCATCTTC
TCCAGCCCTA AGCCCAGGGA GAAGAGTGAA GAATTGAAAG CGAGGCTGAG AAAGCTGGAA GATTTAGCGG AGCGGAAAGC
GTATCAAGAA CTTGTGAAGG ATATTGCACC GCCTAAGGAT GTTCCGGAAC CATTTTCTTC TTACAAGGAT CAATTAGGGT
TTGGTTTACA TGTTGTGGTT ACCATGTTTA CTGGCTATCT TCTAGGATAT GCTGCATTTA GAGCCTTGTT TAATCACAGT
CCTGCCATGA ATGCTGCTGG AGGAATTCTG GGGTTGGTTG GTGCCATGTT TGTTGAAACT TTCCTTTTCA TTATTAGAAG
TTCAAATGCA GATACCAACA GAACAAAAAA ATTCAGTCAA AAATCAAGAT CATCCTTTTC AACACCCAGT TCTGCTAAGA
AAAATCAGTA G

>Vigan.08G105300.01
MGTDKPNRVG LIISTTPLIR GFLSDASKDA SLSDELRQAS SDLLLQSEVP YAALRAVWMS SDPSTRPDLT RLFSGTRFIF
SSPKPREKSE ELKARLRKLE DLAERKAYQE LVKDIAPPKD VPEPFSSYKD QLGFGLHVVV TMFTGYLLGY AAFRALFNHS
PAMNAAGGIL GLVGAMFVET FLFIIRSSNA DTNRTKKFSQ KSRSSFSTPS SAKKNQ*