GBrowse Details

Vigan.08G104500.01

Basic Information:
Name: Vigan.08G104500.01
Multiple alignment
Variant Information
Position: Chr08:8789245..8792380 (+ strand)
Length: 3136
Functional Information:
Description: Similar to ATP synthase subunit d, mitochondrial-like. [XP_004496331.1, Cicer arietinum]
GO: Biological Process: ATP synthesis coupled proton transport (GO:0015986)
Cellular Component: mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) (GO:0000276)
Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078)
InterPro: ATPase, F0 complex, subunit D, mitochondrial (IPR008689)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:154.28,94.58,182.04,111.65,222.51,321.73,178.85,107.90
Arabidopsis thaliana homolog: AT3G52300.1
Automatic updates:
Name: NM_001248143 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306184 (LOC100306184), mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Name: NM_001248944 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500032 (LOC100500032), mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:8789245..8789306 (+ strand)
Length: 62
Type: five_prime_UTR
Position: Chr08:8789307..8789477 (+ strand)
Length: 171
Type: CDS
Position: Chr08:8789930..8790011 (+ strand)
Length: 82
Type: CDS
Position: Chr08:8791449..8791513 (+ strand)
Length: 65
Type: CDS
Position: Chr08:8791646..8791732 (+ strand)
Length: 87
Type: CDS
Position: Chr08:8791812..8791913 (+ strand)
Length: 102
Type: CDS
Position: Chr08:8791914..8792380 (+ strand)
Length: 467
Type: three_prime_UTR

>Vigan.08G104500.01 class=Sequence position=Chr08:8789245..8792380 (+ strand)
GCACAGCAAC GAGAAGGGGA ATTGGAATCG TGTTTGGGGA GAAGAACATC GCAGGGAAAA AAATGAGCGG AACGGTGAAG
AAAGTTACCG ATGTGGCGTT TAAGGTGGGA AAAAACATTG ATTGGGATGG AATGGCGAAG CTTCTCGTCT CCGATGAGGC
TCGCAGGGAG TTCTCGAATC TTCGTCGCGC TTTCGACGAG GTTAACTCCC AACTACAAAC CAAGTTCAGT CAGGTCGCCT
CTCTTTCCGA TCTCTCTCTC TCGCTCTCGC TCTCATTACA TTATGCAGTG GATTTGGGAT GCGAATTTCT GTGTTAATTC
TGAGATGTTA GATCGATTGG ATAATTAGGG CTCGTAATTG ATTTGCAGCG ATTATATTTC ATTTCGCTTT CTGTTTTAAA
TATACACGTT TAACCTAATA AGCTAATCCA AATAAACATA TACTGTCTCT TCTTCCGAAT AGTTGTAGTA ATGATTTTTG
GATTATTTTT ATGAACATTA AGGTCCCTGT TATGTGAATG TTTGGTCAAG CGCTTCTGCG TCGTGTTTTG AACGAGAGCG
CTTTGCGATT CCCATTGATC GTGTGATAAA CTAACTAGTT AGATGCTTGT TGTAGTTGAT TATTTTTTTC GTTTTTTTAA
GTTATCATTT TCAGGCATTG CTTAGTTGTT TATTACATTC TGCAGGAACC TGAGCCCATC GACTGGGATT ATTACAGGAA
AGGCATTGGC CCTCGTTTGG TAGACATGTA CAAGGAGCAT TACGAGAGTA TGTTTATGAA TTCCATGGCC AATGCTATTA
ATATGTATAC ATTTAGATTT ATTAACGATA CCAGTGCCGG GTAGTGTGCT TGACTGATTC TTAGTGGCGA TGATGACATC
ATTGAATTTA AGGTTTGTAA ATTTAGTTTT TTGTCATGCA CTTACTCTCC TCCATGAACC AAGACTCTAG AGTCTGGCTC
AACCCCAATG AAACATTTTT TACTTCTCCA TTTCTTCCTG TGTTATGTGC ACACCAGTTT CCATCATGGG TTGCAAAAAA
GTGCTCCTTG TTCTACACTG GTTTACATTT TTATTTGCAA GTCAGTGCAT ATATGGTAAA CTATTCTACT CTCTTTTATT
CTTAGTCATC TTATTCCGTC TTTCTCTCTC TTTTTCAATT TATTTCTTTT TTGTAAAAAG AAATGATTGT AGAAACTCTA
TATAGACAAA ATTTCGCAAA TAATATTGGA TAGAAATTTG GAAAAATTCA AATAGGTAGT TGACTAGACA TCCTCCAAAC
TTCCATAACA TTCTTTTGTT AACCAATTTC CTCATGTTAT AATGTACTTT CCAATGCGTG TTAAAACCTA TATTCTAGTG
ATACATAGAA TCTAGTGTTC AAAGTGTAGT ATAGAGATTA TGGGACTGGT TATTTTTTTG TTTGAATCAC AATTTGTAAA
AGGAAGAGCA TACGAAACAA CATGCTACTC AGCTGTGGCG ATATTTTGCC TCCCCTTTCA CATTTAAATA TACCTATGTA
CTAGGGACTT GGATTTGGAA AATGGATGCA GTTTGATTTT GATATAATAT CTCATCAATT TCTAATTCTT GTAGCCACTA
TTCAAAATAC GCATAAGCCT TGCCCTGTAG TTTCCTTATA TTATTAGCTA TTGTGGAATG GATCATGCAT TTGATTTTTT
TTTTATTGAA AATCTCACTG AATTCCTGTA TGTGTGTGTC TCTATATAAG TAGTCTATCA AGTGAGATAG TTTGAGAGGT
TAATGTAATT GTTGAAGAGC CTGCATTGAT TAAAAATAAT GCCAAATTAT CCTAGTTAAG TTTGTTGGAT ATATTGTATT
CGCCTTTGTC CCACGCCCGA GATGTCGAAC CCTTGGCATT TGGGAGTAAG TTGAAGAGCC TACATAGACT AGATATAAGG
TTGAATCATG ATTATATATA TATATATATA TATATATATA TATATATATA TATGTGTGTG TGTGTGTGTG TGTGTGTGTG
TGTGTGTGTG TGTGTAAATT AGGCTTAATT TCACTTTCTT AATAGTAATC ATGACAATTC TACCTTGCTT TGGATGGTCT
AAATTAATTT GATATGCCCC ATATATGTGC GTGTTCACAA CCAATATTTT ATAAATTTAC TCTTTTACCT ACCATTAATT
CAAATTTTAT TGTTTGGTTT GATGCCCTTG CCCCTGTTTT GCAGGCATTG AGGTCCCCAA GTTTGTTGAC ACAGTAACTC
CTCAGTATAA GGCTAAATTT GACTCCCTGG TAAGAACTTA GTCAAATTGT TAGTTATTAT TTTGTTTAAA TTTCTTACGT
CCTAAAAAAC ATTTTTACTC ATACATTACA TTTACAATTA TAATTTCCTG ATTTATTATG TTTGCTGTTG TTTGGCTGCA
GTTGATTGAG CTTAAAGAAG CAGAAGAGAA ATCTCTGAAG GAGTCTGAAC GTTTGGAAAA GGAAATTGCT GATGTACAAG
AGTTGAAGGT AATAGATAGC CTCATAGATT TCACAGTTTT ATAGGATTTT TAATAAAATT CTCACTTTTT TTTCTTTTTT
TTCCCAGAAA AAGCTCAGTA CCATGACGGC CGATGAGTAC TTCGAAAAGC ATCCCGAGCT GAGAAAGAAG TTCGATGATG
AGATCAGGAA TGATAACTGG GGCTATTGAT TTTCAATTAG CAAAACGTCA GAATTTGATG TTTTCCTTGC TGGTTCAATA
AAAACAACTA CATCTATTTC TTTGTAACTC GGTTCCCTTT TTCAGTTAAA AGGTTTTTGA TATACAGTGT CGAATTTTTT
GTGGTACTGT AGTTAATCAC ATACGATTTC ACCTTAAAGT GCAGCTTTGG TTGTCCAAAG AAACTGATAT CTTGTCGTTT
CCGTTCCGAG ACAATGTCAA GAAAACGCTA CTCTGCGATT GTCGTTATAA ATATGTCTGC CCGGTAAAGA GATTTTAATT
TATGTTAAAG GTTTGATGGA TCATCAAATC AAGCATTACA CTTCAGCTCG ATATTCCATA GGTCGACAGA TTCGGGTTAA
AATGTTACAT GGGATTTGTA CTGTTGATAA GAATGATAGT TAAATAGGTA TAGTTTGGTA ATGTGAAATG CCAATACTCC
ATCTATCGGA ATGACC

>Vigan.08G104500.01
GCACAGCAAC GAGAAGGGGA ATTGGAATCG TGTTTGGGGA GAAGAACATC GCAGGGAAAA AAATGAGCGG AACGGTGAAG
AAAGTTACCG ATGTGGCGTT TAAGGTGGGA AAAAACATTG ATTGGGATGG AATGGCGAAG CTTCTCGTCT CCGATGAGGC
TCGCAGGGAG TTCTCGAATC TTCGTCGCGC TTTCGACGAG GTTAACTCCC AACTACAAAC CAAGTTCAGT CAGGAACCTG
AGCCCATCGA CTGGGATTAT TACAGGAAAG GCATTGGCCC TCGTTTGGTA GACATGTACA AGGAGCATTA CGAGAGCATT
GAGGTCCCCA AGTTTGTTGA CACAGTAACT CCTCAGTATA AGGCTAAATT TGACTCCCTG TTGATTGAGC TTAAAGAAGC
AGAAGAGAAA TCTCTGAAGG AGTCTGAACG TTTGGAAAAG GAAATTGCTG ATGTACAAGA GTTGAAGAAA AAGCTCAGTA
CCATGACGGC CGATGAGTAC TTCGAAAAGC ATCCCGAGCT GAGAAAGAAG TTCGATGATG AGATCAGGAA TGATAACTGG
GGCTATTGAT TTTCAATTAG CAAAACGTCA GAATTTGATG TTTTCCTTGC TGGTTCAATA AAAACAACTA CATCTATTTC
TTTGTAACTC GGTTCCCTTT TTCAGTTAAA AGGTTTTTGA TATACAGTGT CGAATTTTTT GTGGTACTGT AGTTAATCAC
ATACGATTTC ACCTTAAAGT GCAGCTTTGG TTGTCCAAAG AAACTGATAT CTTGTCGTTT CCGTTCCGAG ACAATGTCAA
GAAAACGCTA CTCTGCGATT GTCGTTATAA ATATGTCTGC CCGGTAAAGA GATTTTAATT TATGTTAAAG GTTTGATGGA
TCATCAAATC AAGCATTACA CTTCAGCTCG ATATTCCATA GGTCGACAGA TTCGGGTTAA AATGTTACAT GGGATTTGTA
CTGTTGATAA GAATGATAGT TAAATAGGTA TAGTTTGGTA ATGTGAAATG CCAATACTCC ATCTATCGGA ATGACC

>Vigan.08G104500.01
ATGAGCGGAA CGGTGAAGAA AGTTACCGAT GTGGCGTTTA AGGTGGGAAA AAACATTGAT TGGGATGGAA TGGCGAAGCT
TCTCGTCTCC GATGAGGCTC GCAGGGAGTT CTCGAATCTT CGTCGCGCTT TCGACGAGGT TAACTCCCAA CTACAAACCA
AGTTCAGTCA GGAACCTGAG CCCATCGACT GGGATTATTA CAGGAAAGGC ATTGGCCCTC GTTTGGTAGA CATGTACAAG
GAGCATTACG AGAGCATTGA GGTCCCCAAG TTTGTTGACA CAGTAACTCC TCAGTATAAG GCTAAATTTG ACTCCCTGTT
GATTGAGCTT AAAGAAGCAG AAGAGAAATC TCTGAAGGAG TCTGAACGTT TGGAAAAGGA AATTGCTGAT GTACAAGAGT
TGAAGAAAAA GCTCAGTACC ATGACGGCCG ATGAGTACTT CGAAAAGCAT CCCGAGCTGA GAAAGAAGTT CGATGATGAG
ATCAGGAATG ATAACTGGGG CTATTGA

>Vigan.08G104500.01
MSGTVKKVTD VAFKVGKNID WDGMAKLLVS DEARREFSNL RRAFDEVNSQ LQTKFSQEPE PIDWDYYRKG IGPRLVDMYK
EHYESIEVPK FVDTVTPQYK AKFDSLLIEL KEAEEKSLKE SERLEKEIAD VQELKKKLST MTADEYFEKH PELRKKFDDE
IRNDNWGY*