GBrowse Details

Vigan.08G100700.01

Basic Information:
Name: Vigan.08G100700.01
Multiple alignment
Variant Information
Position: Chr08:8488814..8492207 (- strand)
Length: 3394
Functional Information:
Description: Similar to Uncharacterized protein. [I1NHA4, Glycine max]
InterPro: SNARE associated Golgi protein (IPR015414)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:18.64,15.43,21.52,15.41,25.85,29.78,25.62,19.69
Arabidopsis thaliana homolog: AT4G09580.1
Automatic updates:
Name: NM_001254160 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100789661 (LOC100789661), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:8488814..8489412 (- strand)
Length: 599
Type: three_prime_UTR
Position: Chr08:8489413..8489544 (- strand)
Length: 132
Type: CDS
Position: Chr08:8491083..8491253 (- strand)
Length: 171
Type: CDS
Position: Chr08:8491353..8491623 (- strand)
Length: 271
Type: CDS
Position: Chr08:8491717..8491958 (- strand)
Length: 242
Type: CDS
Position: Chr08:8491959..8492207 (- strand)
Length: 249
Type: five_prime_UTR

>Vigan.08G100700.01 class=Sequence position=Chr08:8488814..8492207 (- strand)
CTTATGTTCT TCAAAGTTGA AATTGAAAAA ACTCTTTCTC TCTCTCTCTC TCCATCCGAT TGCATTGCAG TTAAATTTCG
CAGAAGGATC CTCACCCGTT CTCTCTCTCT CTGTCTCTCT CTTCCTGGCC CCAAATCTAA GGGCTTTCAC CCAAACAGAG
AAGACCATTG CATCGACCCT TCAAAATCCC CAATTCCCAG AACTCCGGTC AACTCGATTC CCATGAGATT TGGTTAATTG
GATCGTAGTA TGGCGGCGCC GAGGAATGTG ACGGCGACGA GGGATGAAGA GAAGGGCGAG GATGACGATT CACCCTCCGC
CAAGAAGCCC AAATTGGAGA GGTTCCCGCT CAACACGTGG GAATTTGCCG CCGCCGTTGC CGTCTTCTTC GTGTTCTCCA
CGGGCCTCTT CTGCATTTAC CTCACCATGC CCCCCGCCGC TTACACAAGC CTCAAAATCC CCCGCACGCT CTCTGATCTT
CGTCTCCTCA AGTACCGTAA CCATAACAAC TATGCTGTTT CTTCTTTTTA TATATTAATC ATTATTGTAT TAATTTGTTT
ATTTGTCTAT TTATTGTGTT AAAGGGAAGA TCTTTCGATG TATGCGAGCA ACAATCCGGC GCAGTTTATT CTTGGCTATT
GCTCCACCTA CATCTTCATG CAGACTTTCA TGATTCCTGG GACAATCTTC ATGTCCCTTT TAGCTGGGGC GCTTTTTGGA
GTTGTACGAG GAATACTATT GGTTGTTTTC AATGCCACTG CCGGTGCATC TTCCTGTTTC TTTTTGTCTA AGTTAATTGG
CAGGCCTTTG GTTACTTGGT TGTGGCCTGA GAAGCTAAGG TTCTTCCAAG CTGAGGTTTG TTTTTGTATC CTTTATTTTT
TATGTTTTTG CCAACATTTT GAATTTGGTG GGTATTGTTA ATGTGGAATT TTGTTTTCTG GGTGGTTGAA TCAGATTGCA
AAGCGTAGGG ATAAGCTGCT GAATTACATG CTTTTTCTGA GGATAACCCC GACATTGCCA AATCTGTTCA TCAATTTGGC
CTCTCCCATT GTTGATGTTC CGTTTCATGT ATTCTTTTTG GCTACTTTGG TTGGTCTTGT TCCGGCAGCA TATATTACTG
TCAGAGTAAG CTTTCTGTGC TGGTGTTGAT GTTTTTCTGC AGTGTGCTTG CTTTGCTGGT TTCTCTGAAT TAGATATTTT
TTCCTATTCT AAATTTTTGT TTTGTACGTG TGTCTGTTTA TTTTTTTGTT TGAGCTCCTT TTAGTTAGTG AGTGTCGTAT
ACATGCCTCT AGGCGTTTGC AAGGTTGTTG ATATCCTGAT TTTGCACCTA AGATTGCACT GCTCTACTAT TTCTCACGTT
TCTCCATGTT TGAACATATG CAGGATTGCA ACCTGTAGAA TTAGTCTAGG ATCATTAGGG AAGATCGCAA ACCCCTGTGA
ATTTGAGCCC CAAAACCTAA CACGTGATTC GTTTATTTTT GTGAGTTGGA TTGAGCCAGC TAATTGAGAG ACAACATAGA
TTTTGCCCTG AAATCTCTTT CCTTGTCGCT TGATGTCATT GAAATCTATC TCCTGTCTAT TTTGGTTTCA TTTGAACTCT
TTTTATCTCC GTCTCAATTC TGTTCCGTTC ATTTTGGTTG CAATTTCTGT GGTAATTTTT TTTATTGGGT CAGCAAGTTC
TCTACATTTT GCTAGATGGA GCTGGACCAT ATGACTAATT GCTGAGATAT TTTATTGAAT ATTAATGTGA TTTTAAGGTT
ATTTTATTTA TGTTAATTTA TAATATGTAA ATATTCATTT AAATGCATTT TTGTTTTCTG TGTATGATTT AGCTGTGCAT
ATGTTCTGAT AAAAGTGTTT CCCCCCTCTC CCCCTTTTTA TTCTACACTG GAATAAGATC TTGATTTTTG ACTACTTCGG
CTTTTGCATT TTGGAACTTT TGCATTTGAA AACTCTTCTT CTTAGATAGA AATCAGGGAT GGAGTGTCTT CTTGAATGCT
TCTTAAAGAT ACCTTCCGGG GGTATAAGCT TTATGTCAAT CTACTGGTTT TGTTTTTAAT ATGAAGGAAC TTTGTGAATT
AGATCTGCTT AAATTGGAGT GGGATGTTTT TTATTCTTAA GGAAACAGTT CAATAATATA TCGAAGTAAT TCTTGTTCCA
ATATGCATAT ATGCGAATAT ACACAGATGA TTCATTCATA TTTTACTTAT TAGAACAACT AGAGTAAATC ATTATTAAGC
TAAGAGATTT ATTGCAGCAT TTATCTTGAA GGCTATTGGG GATTTGAAAG ATTATGCTAG CAATGTTTCG GTTGAAATGG
CACATTATTA GTTCCACTGA GAACTGCTAC ATTGAGAAAT GCATCTAAAT CCTTTTTCCT AACTGCTTAG AGTGTATTTT
CTGTTGTTCC TTGTTGATTG TTTTTGTACA TTTTGCATCT CCTTTCATTT GAACTAGGCT AATGCAGACT GTGTGGTCAT
ACGTTAGTAT GTTCTTCTCA TTTTTACCGT GTCACATTTT GATTTCAATC AACGTGGATG GTTGTTGCAT ATAATTCCTA
ATTTATGGAT GCAAAGGATA AATATCATCT ATGATATTCA TGCTTTTGAT GATCTTCTGC TTTTCTTTTA TTGTACTCCT
AACCTCTATT GTTGTTTAAC CAGGCTGGCC TTGCTCTTGG GGATCTAAAG TCAATTAAGG ATCTATATGA TTTTAAGACA
TTATCGGTAC TTTTCCTCAT TGGTTTTGTT TCCATAGTTC CAACACTTCT GAAGAGAAAG AGAGTATACG AATGAAGTTG
TGCGAGCCTA GCTTGCGTTA TACATTTTGT CAAAAGATAA GTTACGTTAT CAGAGAAGAT AGTATTGAAG AAAGATATCA
ATGAGAAAGG GTGTATTGTT ATTAACTTAA ACAGTAGCAT GTGCTCCATT TTATTTTCTG TGGTGGAGCC TAAGTTTTTT
ATGTTTCCCT TTTTATATTT TGGTTGTGTG GAGAGAGCAA GGGTAAACAT AGCTGAGTGA GTGGTGTACA ATCGATTGAG
CTACGGTTAC CAGGCTTTGT TGGAGCATTA AATTACACAT ACTGACATTA ACGTCATCAA GAAGGTTGTG GTGTTTGTTT
AGCGATGCAG TATGCATACT TGCTCCGCAC CATATAGGAT CTGACTTTTA TTCGTTAGTG TTGCTTTTTC AATCTGTAGA
AGAGAACTTC AACCATTATT CTTCCTGTCG TTAGAGTCAC CTCTGGTATT GTTATCCAAT TTAATGCTCT TTCTCTAACA
GGAAGTCATC TCAATGTTGC GTATAAACTT AGGATGAAAC GGACTGATGT TTGTATAAAT CAGCTAGATA CTGCAATCTG
CACTTAAAAG AATTGGTGTT TAGTTCCATT CCAT

>Vigan.08G100700.01
CTTATGTTCT TCAAAGTTGA AATTGAAAAA ACTCTTTCTC TCTCTCTCTC TCCATCCGAT TGCATTGCAG TTAAATTTCG
CAGAAGGATC CTCACCCGTT CTCTCTCTCT CTGTCTCTCT CTTCCTGGCC CCAAATCTAA GGGCTTTCAC CCAAACAGAG
AAGACCATTG CATCGACCCT TCAAAATCCC CAATTCCCAG AACTCCGGTC AACTCGATTC CCATGAGATT TGGTTAATTG
GATCGTAGTA TGGCGGCGCC GAGGAATGTG ACGGCGACGA GGGATGAAGA GAAGGGCGAG GATGACGATT CACCCTCCGC
CAAGAAGCCC AAATTGGAGA GGTTCCCGCT CAACACGTGG GAATTTGCCG CCGCCGTTGC CGTCTTCTTC GTGTTCTCCA
CGGGCCTCTT CTGCATTTAC CTCACCATGC CCCCCGCCGC TTACACAAGC CTCAAAATCC CCCGCACGCT CTCTGATCTT
CGTCTCCTCA AGGAAGATCT TTCGATGTAT GCGAGCAACA ATCCGGCGCA GTTTATTCTT GGCTATTGCT CCACCTACAT
CTTCATGCAG ACTTTCATGA TTCCTGGGAC AATCTTCATG TCCCTTTTAG CTGGGGCGCT TTTTGGAGTT GTACGAGGAA
TACTATTGGT TGTTTTCAAT GCCACTGCCG GTGCATCTTC CTGTTTCTTT TTGTCTAAGT TAATTGGCAG GCCTTTGGTT
ACTTGGTTGT GGCCTGAGAA GCTAAGGTTC TTCCAAGCTG AGATTGCAAA GCGTAGGGAT AAGCTGCTGA ATTACATGCT
TTTTCTGAGG ATAACCCCGA CATTGCCAAA TCTGTTCATC AATTTGGCCT CTCCCATTGT TGATGTTCCG TTTCATGTAT
TCTTTTTGGC TACTTTGGTT GGTCTTGTTC CGGCAGCATA TATTACTGTC AGAGCTGGCC TTGCTCTTGG GGATCTAAAG
TCAATTAAGG ATCTATATGA TTTTAAGACA TTATCGGTAC TTTTCCTCAT TGGTTTTGTT TCCATAGTTC CAACACTTCT
GAAGAGAAAG AGAGTATACG AATGAAGTTG TGCGAGCCTA GCTTGCGTTA TACATTTTGT CAAAAGATAA GTTACGTTAT
CAGAGAAGAT AGTATTGAAG AAAGATATCA ATGAGAAAGG GTGTATTGTT ATTAACTTAA ACAGTAGCAT GTGCTCCATT
TTATTTTCTG TGGTGGAGCC TAAGTTTTTT ATGTTTCCCT TTTTATATTT TGGTTGTGTG GAGAGAGCAA GGGTAAACAT
AGCTGAGTGA GTGGTGTACA ATCGATTGAG CTACGGTTAC CAGGCTTTGT TGGAGCATTA AATTACACAT ACTGACATTA
ACGTCATCAA GAAGGTTGTG GTGTTTGTTT AGCGATGCAG TATGCATACT TGCTCCGCAC CATATAGGAT CTGACTTTTA
TTCGTTAGTG TTGCTTTTTC AATCTGTAGA AGAGAACTTC AACCATTATT CTTCCTGTCG TTAGAGTCAC CTCTGGTATT
GTTATCCAAT TTAATGCTCT TTCTCTAACA GGAAGTCATC TCAATGTTGC GTATAAACTT AGGATGAAAC GGACTGATGT
TTGTATAAAT CAGCTAGATA CTGCAATCTG CACTTAAAAG AATTGGTGTT TAGTTCCATT CCAT

>Vigan.08G100700.01
ATGGCGGCGC CGAGGAATGT GACGGCGACG AGGGATGAAG AGAAGGGCGA GGATGACGAT TCACCCTCCG CCAAGAAGCC
CAAATTGGAG AGGTTCCCGC TCAACACGTG GGAATTTGCC GCCGCCGTTG CCGTCTTCTT CGTGTTCTCC ACGGGCCTCT
TCTGCATTTA CCTCACCATG CCCCCCGCCG CTTACACAAG CCTCAAAATC CCCCGCACGC TCTCTGATCT TCGTCTCCTC
AAGGAAGATC TTTCGATGTA TGCGAGCAAC AATCCGGCGC AGTTTATTCT TGGCTATTGC TCCACCTACA TCTTCATGCA
GACTTTCATG ATTCCTGGGA CAATCTTCAT GTCCCTTTTA GCTGGGGCGC TTTTTGGAGT TGTACGAGGA ATACTATTGG
TTGTTTTCAA TGCCACTGCC GGTGCATCTT CCTGTTTCTT TTTGTCTAAG TTAATTGGCA GGCCTTTGGT TACTTGGTTG
TGGCCTGAGA AGCTAAGGTT CTTCCAAGCT GAGATTGCAA AGCGTAGGGA TAAGCTGCTG AATTACATGC TTTTTCTGAG
GATAACCCCG ACATTGCCAA ATCTGTTCAT CAATTTGGCC TCTCCCATTG TTGATGTTCC GTTTCATGTA TTCTTTTTGG
CTACTTTGGT TGGTCTTGTT CCGGCAGCAT ATATTACTGT CAGAGCTGGC CTTGCTCTTG GGGATCTAAA GTCAATTAAG
GATCTATATG ATTTTAAGAC ATTATCGGTA CTTTTCCTCA TTGGTTTTGT TTCCATAGTT CCAACACTTC TGAAGAGAAA
GAGAGTATAC GAATGA

>Vigan.08G100700.01
MAAPRNVTAT RDEEKGEDDD SPSAKKPKLE RFPLNTWEFA AAVAVFFVFS TGLFCIYLTM PPAAYTSLKI PRTLSDLRLL
KEDLSMYASN NPAQFILGYC STYIFMQTFM IPGTIFMSLL AGALFGVVRG ILLVVFNATA GASSCFFLSK LIGRPLVTWL
WPEKLRFFQA EIAKRRDKLL NYMLFLRITP TLPNLFINLA SPIVDVPFHV FFLATLVGLV PAAYITVRAG LALGDLKSIK
DLYDFKTLSV LFLIGFVSIV PTLLKRKRVY E*