GBrowse Details

Vigan.08G100600.01

Basic Information:
Name: Vigan.08G100600.01
Multiple alignment
Variant Information
Position: Chr08:8484771..8487497 (+ strand)
Length: 2727
Functional Information:
Description: Similar to 50S ribosomal protein L21, chloroplastic-like. [XP_004496371.1, Cicer arietinum]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L21 (IPR001787)
Ribosomal protein L21, conserved site (IPR018258)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:86.00,20.81,53.36,188.27,22.64,62.34,11.05,31.99
Arabidopsis thaliana homolog: AT1G35680.1
Automatic updates:
Name: NM_001251219 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527321 (LOC100527321), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Name: NM_001252777 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative 50S ribosomal protein L21, chloroplastic (LOC100795152), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:8484771..8484915 (+ strand)
Length: 145
Type: five_prime_UTR
Position: Chr08:8484916..8485203 (+ strand)
Length: 288
Type: CDS
Position: Chr08:8485561..8485641 (+ strand)
Length: 81
Type: CDS
Position: Chr08:8486478..8486579 (+ strand)
Length: 102
Type: CDS
Position: Chr08:8486663..8486737 (+ strand)
Length: 75
Type: CDS
Position: Chr08:8487349..8487444 (+ strand)
Length: 96
Type: CDS
Position: Chr08:8487445..8487497 (+ strand)
Length: 53
Type: three_prime_UTR

>Vigan.08G100600.01 class=Sequence position=Chr08:8484771..8487497 (+ strand)
AATTTCTATT GTTAAAAAAA ATAATAAAAC TAATTTAAAA ATAATTTTTG GGTGAAAAAT AAAAGTGAGA AGAGAAAAGG
ATAGGAAAGA AGAGAGGATA GATAGGCCTG AGAAGAAGAG ACTGAGAGAG AGAGGTCTCT CAAAAATGGC TACTGCCACT
GTTTCAACTC TGTGCGCTAC ATTCGGAACC CATTGCGCCA TTTCTCATAA CCCTAAACCT CTATTTTCTC CACCTTTCAA
TCTCAATCGT TTTCCTTCTC ACTCTTACAA TTTCACATTC TCGCCTCGCT CACCTCTCGC ACCCGTTCCC AAGTCCTCAG
AATCTGCGGT TGCCCAAACC GAAACGGAAA CCGGTTCGAC CGAACCAGAA CCGACCCAGA TTGTCTCGGC TAAGGCACCC
TCATGGGAGC CCGGTCTCTT CGCAGTCGTA ATGGTGAGTC CTGATTAATG AATTGGGAAT AGCTTTCTTT TTCTGAAGTT
GGGTATGAGA TTCAATGACC CAGTGTGGAA AAGTTGCAAG CTGCGGTTTA AAATTGTTGA CCCAGATGAG TTTTCTGGCC
AAATGCATTT GTACTCCAAG ATTTGAGGCT GCTAAATGCT TTTAATTATT GCTTATATAT GTTTTTGGTG CTATTGTAAA
GTGGCGGCCA TCGATTAAAA CAGTTAATTC TGGTTGTTTG AAGTGTTGTT TTATTGTTCC ACTTAAGTTT GATAGGATAT
TTTTGTGGTT TCTGCTAATA TTATCTTCTG TCTTGTGTGA TTCTGAACTT GTTTTTGTTG TATTGTCTAG ATTGGTTCAC
GCCAATATAT TGTTCACCCC GGGCGAAAGC TTGTTGTTCA GAGGTTGTCA GGTGCAAATG TTAATGATAA GGTGCATAAC
TATGATAGCT TGTTTACTTC TTAACTTCTG CTGTTTTGGA ACAATATAAA ACCTTTTCTT ACTAGGTGGA GTTTGCTACA
TGGATCAAAT GATGTTGTAA TATTCTATTC TGAATTATCT CTGTAGACAA ACCCCTGATT TCTCAATCCG TCATGCTGAT
GTTGTCTGTA ATTTTTCTCG GTCGGTCTCC CTCTAGCTCA AGTAATAGAT ACGCTTTAAC TCATCAGCCA CAGTTTTGTA
TCATTCTTAA AACTCTTTCA ATGTTTTTTT TTCTGTCTTT GATTATATGC TTCGCCAGCT TACTACCATC ACTTTCTCCC
CAAACATTAT TGCTTTTAAA ATTTCTGTGA TTTGAGCGTG ATGGCAGCTG GGTAATAAGC ACTTGAATAG TGAATATCAG
AATAGTGTTT ATGTATGCGA AAGTGCATGA ATTACAGCAT GTCATTTTTT AAGGGCAAAA TACCATAGTA TGTTATTATT
ATTGATGTAA TTGGTAGTCA CAAGAAAATG TATCTGCAAC AGACAGACAA TATATTTGGA GAATGAAGTT CATTGACTAG
TGTAATCATA TATCGTGAAA ATTTAACTGA TTGTAGATTT AGGACCTATT AATGATCTGA ACCATGGTTT AGGACATGTA
GATTTAAAGG TTCTGACAAA AAAGTCTGTT TACGAAACTT GGCCTAAGTA AGCTGAATAA AGTTATTTTT ACGAGTGGTT
CGGGGTGATG TTGATGCCAT CTCAAGTGAT AATGCTATAT GAACAACTTC TGTAATTTCC AAAAGATTAT TTTATTATCA
GTTTAATTTA GTTGTTGGTA ACTACAGATT GCCTTGCACA AAGTTTTACT GGTTGGCACT GATACATCTT GCTACATTGG
GAAACCAATA GTTACAAATG CTGTGGTATA TGCAACGGTT GAAGAGCAGG TACACCTTTT TCTTTTCGTT TATCTTCTCT
AGATAATATT TTTAAAAGAA ATCTTCTACC TACCACTTTA ATTTTAATGC AGGGTTTAGA CCCCAAAGTA ATTGTCTTCA
AATATAAAAA GAAGAAGCAC TATCGCAGAA ACATTGGACA CAGACAGGTA CAACAGTTAT GCTTTAACTT GTGCAATCAA
ATTATTTATC AAATATTTTG CAATTGAAAT GTTGGTTTGC ATGGCTTGGG AGAGTGGTTG GGAATTATTT ATTCGTATGG
GTGAATTCTC TCGTACTTAT AGTCTCTTGA GGGAGCTTGA AAATGAGTCC ATCTTCTTTG TGTGTACAAT AGCAATAATG
AGGTTTAAAC CTAGCATCTC ATGCAAACTA TCACCCCACC TTTCTTAGAC AGTTTGGTGG AATGATCTGT CCGAGCTTTT
GAGGAATGTA GAAGTAAAAT GACCAAGTTT GGTTATCATG AAAATAAAAT TTCATGCCTT TGGAACCATA AATTTGGGAA
CTAGACATCT CCTTCCATGG CAGTCATCAC TTCACCATAC TTTTTAAGTG GCTATAACTA ATTCCACTTA TTATACTGAG
TGGTGCAAGA TTACCATGGC ATTAATGTTA TGCTACTTAA ATCATACAGT GACTTATCAG AAACTGAATA AAAATTAAAA
AATCTTGTGA CATCTCTCCA AATAAAGCTT AGTTGAAAAT ATGATTTCGT CCCTGTTATT GAAATGCTTG ACATTGTGTT
GATTTCAACA TGTGACAGCC ACATACACGT ATACGGATAA ATAGCATTAT GGGCTATGAG AACTACCCAA AAGTTACTAT
GGACGATATC AAATCGAAGG ATTCCGAATC ATGAACATCT TGTGAACTGT CCCTATACTG TAGCTTCTTC ATCTCCAATT
TTATGCA

>Vigan.08G100600.01
AATTTCTATT GTTAAAAAAA ATAATAAAAC TAATTTAAAA ATAATTTTTG GGTGAAAAAT AAAAGTGAGA AGAGAAAAGG
ATAGGAAAGA AGAGAGGATA GATAGGCCTG AGAAGAAGAG ACTGAGAGAG AGAGGTCTCT CAAAAATGGC TACTGCCACT
GTTTCAACTC TGTGCGCTAC ATTCGGAACC CATTGCGCCA TTTCTCATAA CCCTAAACCT CTATTTTCTC CACCTTTCAA
TCTCAATCGT TTTCCTTCTC ACTCTTACAA TTTCACATTC TCGCCTCGCT CACCTCTCGC ACCCGTTCCC AAGTCCTCAG
AATCTGCGGT TGCCCAAACC GAAACGGAAA CCGGTTCGAC CGAACCAGAA CCGACCCAGA TTGTCTCGGC TAAGGCACCC
TCATGGGAGC CCGGTCTCTT CGCAGTCGTA ATGATTGGTT CACGCCAATA TATTGTTCAC CCCGGGCGAA AGCTTGTTGT
TCAGAGGTTG TCAGGTGCAA ATGTTAATGA TAAGATTGCC TTGCACAAAG TTTTACTGGT TGGCACTGAT ACATCTTGCT
ACATTGGGAA ACCAATAGTT ACAAATGCTG TGGTATATGC AACGGTTGAA GAGCAGGGTT TAGACCCCAA AGTAATTGTC
TTCAAATATA AAAAGAAGAA GCACTATCGC AGAAACATTG GACACAGACA GCCACATACA CGTATACGGA TAAATAGCAT
TATGGGCTAT GAGAACTACC CAAAAGTTAC TATGGACGAT ATCAAATCGA AGGATTCCGA ATCATGAACA TCTTGTGAAC
TGTCCCTATA CTGTAGCTTC TTCATCTCCA ATTTTATGCA 

>Vigan.08G100600.01
ATGGCTACTG CCACTGTTTC AACTCTGTGC GCTACATTCG GAACCCATTG CGCCATTTCT CATAACCCTA AACCTCTATT
TTCTCCACCT TTCAATCTCA ATCGTTTTCC TTCTCACTCT TACAATTTCA CATTCTCGCC TCGCTCACCT CTCGCACCCG
TTCCCAAGTC CTCAGAATCT GCGGTTGCCC AAACCGAAAC GGAAACCGGT TCGACCGAAC CAGAACCGAC CCAGATTGTC
TCGGCTAAGG CACCCTCATG GGAGCCCGGT CTCTTCGCAG TCGTAATGAT TGGTTCACGC CAATATATTG TTCACCCCGG
GCGAAAGCTT GTTGTTCAGA GGTTGTCAGG TGCAAATGTT AATGATAAGA TTGCCTTGCA CAAAGTTTTA CTGGTTGGCA
CTGATACATC TTGCTACATT GGGAAACCAA TAGTTACAAA TGCTGTGGTA TATGCAACGG TTGAAGAGCA GGGTTTAGAC
CCCAAAGTAA TTGTCTTCAA ATATAAAAAG AAGAAGCACT ATCGCAGAAA CATTGGACAC AGACAGCCAC ATACACGTAT
ACGGATAAAT AGCATTATGG GCTATGAGAA CTACCCAAAA GTTACTATGG ACGATATCAA ATCGAAGGAT TCCGAATCAT
GA

>Vigan.08G100600.01
MATATVSTLC ATFGTHCAIS HNPKPLFSPP FNLNRFPSHS YNFTFSPRSP LAPVPKSSES AVAQTETETG STEPEPTQIV
SAKAPSWEPG LFAVVMIGSR QYIVHPGRKL VVQRLSGANV NDKIALHKVL LVGTDTSCYI GKPIVTNAVV YATVEEQGLD
PKVIVFKYKK KKHYRRNIGH RQPHTRIRIN SIMGYENYPK VTMDDIKSKD SES*