GBrowse Details

Vigan.08G096600.01

Basic Information:
Name: Vigan.08G096600.01
Multiple alignment
Variant Information
Position: Chr08:8125637..8130238 (+ strand)
Length: 4602
Functional Information:
Description: Similar to NAC domain-containing protein 89-like. [XP_004496404.1, Cicer arietinum]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
InterPro: NAC domain (IPR003441)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:87.29,32.17,16.75,30.14,24.48,18.64,29.41,14.07
Arabidopsis thaliana homolog: AT1G34190.1
Automatic updates:
Name: NM_001287446 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max NAC transcription factor (SNAC38), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:8125637..8126219 (+ strand)
Length: 583
Type: five_prime_UTR
Position: Chr08:8126220..8126415 (+ strand)
Length: 196
Type: CDS
Position: Chr08:8127117..8127394 (+ strand)
Length: 278
Type: CDS
Position: Chr08:8127510..8127794 (+ strand)
Length: 285
Type: CDS
Position: Chr08:8128279..8128834 (+ strand)
Length: 556
Type: CDS
Position: Chr08:8129185..8129549 (+ strand)
Length: 365
Type: CDS
Position: Chr08:8129550..8130238 (+ strand)
Length: 689
Type: three_prime_UTR

>Vigan.08G096600.01 class=Sequence position=Chr08:8125637..8130238 (+ strand)
TCACACCCAA TATCCCAATC CCATACACCC CGACTATTGT GTGACCGGTA CACCTTTGAC CCCAATGCTC TAATCACTGC
ACATCACCGA ACTGTTGAAT CTTGAGACTC ACGCAGTCGC ATCACGTGGA TGATCTCACA CTCTCACTCC CTCACTCAAG
GGCACTTGAT CTGCCTCAGA GGAAGGTTCC TCCAACCACT GATATCAGCT TCCTTCTTTG ACCGCAACAC TATCCCAAAC
CCAAACGAAA ACCTCTCACA ATTTTCCCAA TTCACGCGTT TCTTTCCTTT TCTAACACCC TTGGCTTAGG TTTTTCGTTC
CGCAGCTCGG TCTTCGAATC CTCTCACCCA GAGGTTCGAT TCGTACCATG TAATTGTGGG ATTTTTGCTT AGCCACTTCT
TTATTCCCAA ATTTTTGTTC TCTATTTCCC TGGTTAGGCT TTTTCATTCT AGGATTCGAT CGCCGGTTTC GAGTACACGA
GGCTTGGGTC GTGTCATATT ATTGGGGTTT TGGTTTTGAT CTTGAAAGTG GTAGATTTTG GTGTGGGTGA TCGACGTTGT
TTGGTTTTTG CTCACGATCG AGAATGGGTG AGGCTTCAGG AGATGGTTCC GCTGATTGTT TCAGCCAGAT GATGTCGTCG
ATGCCGGGCT TTCGCTTCCA TCCTACGGAT GAGGAGTTGG TGATGTACTA TCTGAAGCGG AAGATTTGTG GGAAGAGGCT
GAAGCTCAAC GTTATTCGTG AAACCGATGT GTATAAGTGG GATCCTGAGG AGTTGCCTGG TATTTGATCG CTCCTATTTA
TACTTTATAA TTTTTTTTAG TCGATGATTG ACTGATTGTT ATGACGTTGA CTTGGGTTTG TGTTTCTTTT CATTTGGTTG
TTTTTGTTGT TCGATTAGAA GTTGATGTGG GGATGGGTAT TCAGATCTTC ATGTTGTAAA TATTTGTTAT GACTGGTCTT
AGCATTTTGA TGAAGTGATG CTTTGGGTGC GATTTTTTTG GTGCAGTACC AATCGTTGAC TTGGGTTTAC TTCGATGAGT
GTTATTTGGT GTTTTATTTT TAGCTCTAAT AAGCGGTTCA GGTTATATTT GTGTTGCTGT GAATATGTGC TGTTTTTTAT
GTTAGGATGC TCACAGGGGT TTTGTTTTCC TTAGCTTTGT AGACTGATGA TTTCATTTAC GACAGCTCTA GCTATGTTCT
CTTTTTTTTT TTTTATATTC GGGGGGTGGT TCGAGATCTC TTCATTGATA TGGTGGGTAT TTCATAGGAA TCAATGTTTC
AATATTGTGA ATGCTTTGTA GTTCTAAAGT TTTGGCTTAT CTTACACAAA AATTATATAG ATTTTGATAT TATGTGCATA
TATACTTATC TTTCATATTC AGTCTCAATA TTTCTTTAAT CTGATTCATA AAATTTTGTC TGCCATTCAG TTTATTCTTG
TTTCGATAGT AGCTAATTAA TGGCTTATAA TATTTTGCAG GGCAATCCAT ACTGAAAACT GGAGATAGGC AGTGGTTCTT
TTTCTGTCAC AGAGATAGGA AATATCCTAA TGGTGCAAGG TCTAATCGAG CCACCAGACA TGGATACTGG AAGGCAACAG
GAAAGGATCG TAATGTGATA TGCAATTCTA GGGCAGTTGG AGTGAAAAAA ACCCTGGTTT TCTACATAGG CAGAGCTCCT
AGTGGAACGC GGACTGATTG GGTTATGCAC GAATACACCA TGGATGAAGA GGAGCTTAAG AGATGCCAAG GTGTTAAGGT
ACCATTTTAA GTACCCATTT TGCTTCAAAC TTTTTTATTT GTTTTCCTTG TTGTTTTGAT GATGGTAAGA GTAAATGTAC
TGACTTTGAG TTTTTATATA AATTCATTAT CAGGACTACT ATGCACTTTA TAAGGTTTTC AAGAAAAGTG GACCTGGTCC
TAAAAATGGT GAACAGTATG GTGCACCATT TAATGAACAA GAGTGGGCAG CGGATGATGA CATTGTGGAT TTTAATAATA
ACATAACTGA TCAGGAGGAT CCAAATGTTG TCCCTGAGAA TGGGAGTGCA CTGCATCCTT TGCTTGATGA TGAAATCAAT
GACATCATTA GAGAAATTTT GGATGATGAG CTTGTCCTTG ATCAGCAGCA TGTGAATGGT TATCTTGACT TTCCTCAGGT
CTGTAATCTT CTCATTTTTT CTTACTTGAT TTATATCCAC CTTCATTTCC TTTTTGTTTA TGATGTGGGT AGGGTGAAGG
GGTAGGAAAC CTTTAGGAGC ATATACTATA TATGTAATTA TTTATACTTT TCCAAGTTCT GATCTTTTTG TCTATAAACT
GATTTTCCTT ACCTGAGGGG ATAAAGATTA TTGTTGACGT TGTTGGTGAT AAACTGGCTT CTGATATGAC TGCAAAAATT
TGTGAAAAGC TGCTATATGT TGTGGTTTTG GATTTGTGAA TGCTGAAAAA TAATACATTT TGAATATCTC TACTGAAATA
AAGAAACTAG AAGGCAGTCT CATTTATTTT GTTGATTGTA ATGTTGGTCT TCCTTTCTAC CTTTATCAGA TTTTTCCTAG
CTACTGATGA TTCGTTGCCC TTTTAATTTC TACTTGTCAT TTCTGAAAGT CATTTACTGA TGTTTGTCCT AAAATTGTGT
AGGTTGTTAC TGAAGAAACA CAAAGTACTG TTGTGGATCA GTTCTCTGAG GTGCTTATGT ACCGTGAGAC AACCGATCCT
AGCTGTCAAT ATTTTGATGT GCAGCCCAGC TTTGACTTCA ACCAGCCAGT TACTTCTCAT TTACAAGTTT CTGAAGCTTC
TGAGGTTTCT TCTGCCTCCA ACATCCAAAG AAAGGGGCTT GACTTGGATA AGGTTGGCTT TTTGGAAATT AATGATCTCA
TTGATAATGA TCCTGCTTTG GCAAATGTGG AAAATCCGGT GGAGTACCCG CATTTTGAAG ATGGGTTAAG TGAACTTGAT
CTGTACCAAG ATGCAGAGAT GTTTCTTCGT GACCTGGGGC CAATAATTCA CGAAACAGAT TCACATGCAT ATACAAATGC
CCTTGTCAGC AACAATATCG AAAGTCAAAG TTACCAGTTG CAATCCGGTT CTGAGGATGC CAACCAAACT GTTGGTGAAT
TCTGGATGCA CGATGAAAGA AACACCCTGA TTCCATCAGA AGAAGGCTTT GTCGATTCTT TCTCACTATC ATCCCCAGGT
ATAGTCAACA GCACATGATA CAGTGTTGCT CCCCTGCCAA AAAATGATTT TACTCTTTGA TTCGGATGGA GATGCAAGCT
TCCCATCTCA TTTGTTCTGA GCTCTTCACA GTTTAATGCT CTTGATTGAC ATGCCAGCTT ATATGCATGG CAGGAACTTT
TCTGGAGTAT AAAATTTGTG CCATTTTGAT AGCTTTTAAA ACTCAAATTA AGTTTTCTGA TTTTATGTTC TCTCTGGAAA
AATGAGAGCC GAGCCAGTTT CAAGTGTCTG TTTTGTAAAA TCTAAAACAA ATGTCTTAGG CTATCCCCTG ATATATGCTA
GTTGTTGTTT TTTTTGGTCA TGTTTTAGGT GTTGTATGTG AATCTCTCAG CTTTCCTACG GAAGGCAATT ACAATCAAAG
TAGCACCGTG GAAGATGTTT CTACAAGTAG CTTCTCCTCT TCTCTCTGGG CCTTTGTTGA GTCAATACCT ACTACTCCTG
CATCAGCTGC TGAAAGTGCT TTGGTGAATC GAGCTTTGAA TCGAATGTCT AGCTTCAGCC GGGTAAAGAT CAGGCACACA
AACATTACTG CAGGTAAAGA CACTGCAACT ACGAAGAAAG CAGGCAGAAA GGGATTTTCA TTCCTTTTCT TCCCTATTCT
TATTGCTTTA TGTGCTTTTT TGTGGGTTTT TGTTGGAAAC TTAAGATCAT TAGGGAGATG TATCTCTCCT TGATTATTAT
ATATCATGTA AATCCAAAGT TTTGCTGCTA GGTATATATT GTCTGGGATC TCCCAGTTGT CTGGTACCTC CCGTAACTGC
CAAGCAGTGC TGTTCTAACA TATTCTCAAA AATAAAAAAA ATATATAGTT ATCTTTGTGA ATATTGAGGT CATTATAAGG
CGTAGGGTAA GCCTGATGAA CCTTAATTGA AGAGATGGCA ATGTACAGGA GTTTGCAGGG TGATATGGTA GCCAAGTTTT
CAAACTCGTC TAATCTTATT TTTTTATTGG TTTATAAAGT TTTTTTGGGC CCATGTAAAT CTTGTTTTTA TTAACCTGGA
CAACATTTTA TTTTGGAGAT TGATTGTTCA TGGATAATAT CTCATTTTGT GGAATGTGTC TTTGGATTTG TGATTATCTT
TGTTGGTTAT AACGCCTCAT TATCATTAGA TTGTTATTGT TTAAAAAATA ACCGGTCTGC AACTAAGTCT GAGAATCTGG
ATGGTTGGAC AGAACAGGTT TGTTCATTAA ACCTGAGCAG ATCATGAAAC TTAGTCAATG GATCAAGAAT CGTCTAAAAT
TGGTCCAATC ATTGGATGGT TTCAGTAAAT TAGTTTGAAT TGCTTTTATT TCCTTAAAAG TGTTTCTTGT ATTTTTTAGA
CCATTTCATT ACTTTCATTA AACCAGTGTT TATATTTGAA AT

>Vigan.08G096600.01
TCACACCCAA TATCCCAATC CCATACACCC CGACTATTGT GTGACCGGTA CACCTTTGAC CCCAATGCTC TAATCACTGC
ACATCACCGA ACTGTTGAAT CTTGAGACTC ACGCAGTCGC ATCACGTGGA TGATCTCACA CTCTCACTCC CTCACTCAAG
GGCACTTGAT CTGCCTCAGA GGAAGGTTCC TCCAACCACT GATATCAGCT TCCTTCTTTG ACCGCAACAC TATCCCAAAC
CCAAACGAAA ACCTCTCACA ATTTTCCCAA TTCACGCGTT TCTTTCCTTT TCTAACACCC TTGGCTTAGG TTTTTCGTTC
CGCAGCTCGG TCTTCGAATC CTCTCACCCA GAGGTTCGAT TCGTACCATG TAATTGTGGG ATTTTTGCTT AGCCACTTCT
TTATTCCCAA ATTTTTGTTC TCTATTTCCC TGGTTAGGCT TTTTCATTCT AGGATTCGAT CGCCGGTTTC GAGTACACGA
GGCTTGGGTC GTGTCATATT ATTGGGGTTT TGGTTTTGAT CTTGAAAGTG GTAGATTTTG GTGTGGGTGA TCGACGTTGT
TTGGTTTTTG CTCACGATCG AGAATGGGTG AGGCTTCAGG AGATGGTTCC GCTGATTGTT TCAGCCAGAT GATGTCGTCG
ATGCCGGGCT TTCGCTTCCA TCCTACGGAT GAGGAGTTGG TGATGTACTA TCTGAAGCGG AAGATTTGTG GGAAGAGGCT
GAAGCTCAAC GTTATTCGTG AAACCGATGT GTATAAGTGG GATCCTGAGG AGTTGCCTGG GCAATCCATA CTGAAAACTG
GAGATAGGCA GTGGTTCTTT TTCTGTCACA GAGATAGGAA ATATCCTAAT GGTGCAAGGT CTAATCGAGC CACCAGACAT
GGATACTGGA AGGCAACAGG AAAGGATCGT AATGTGATAT GCAATTCTAG GGCAGTTGGA GTGAAAAAAA CCCTGGTTTT
CTACATAGGC AGAGCTCCTA GTGGAACGCG GACTGATTGG GTTATGCACG AATACACCAT GGATGAAGAG GAGCTTAAGA
GATGCCAAGG TGTTAAGGAC TACTATGCAC TTTATAAGGT TTTCAAGAAA AGTGGACCTG GTCCTAAAAA TGGTGAACAG
TATGGTGCAC CATTTAATGA ACAAGAGTGG GCAGCGGATG ATGACATTGT GGATTTTAAT AATAACATAA CTGATCAGGA
GGATCCAAAT GTTGTCCCTG AGAATGGGAG TGCACTGCAT CCTTTGCTTG ATGATGAAAT CAATGACATC ATTAGAGAAA
TTTTGGATGA TGAGCTTGTC CTTGATCAGC AGCATGTGAA TGGTTATCTT GACTTTCCTC AGGTTGTTAC TGAAGAAACA
CAAAGTACTG TTGTGGATCA GTTCTCTGAG GTGCTTATGT ACCGTGAGAC AACCGATCCT AGCTGTCAAT ATTTTGATGT
GCAGCCCAGC TTTGACTTCA ACCAGCCAGT TACTTCTCAT TTACAAGTTT CTGAAGCTTC TGAGGTTTCT TCTGCCTCCA
ACATCCAAAG AAAGGGGCTT GACTTGGATA AGGTTGGCTT TTTGGAAATT AATGATCTCA TTGATAATGA TCCTGCTTTG
GCAAATGTGG AAAATCCGGT GGAGTACCCG CATTTTGAAG ATGGGTTAAG TGAACTTGAT CTGTACCAAG ATGCAGAGAT
GTTTCTTCGT GACCTGGGGC CAATAATTCA CGAAACAGAT TCACATGCAT ATACAAATGC CCTTGTCAGC AACAATATCG
AAAGTCAAAG TTACCAGTTG CAATCCGGTT CTGAGGATGC CAACCAAACT GTTGGTGAAT TCTGGATGCA CGATGAAAGA
AACACCCTGA TTCCATCAGA AGAAGGCTTT GTCGATTCTT TCTCACTATC ATCCCCAGGT GTTGTATGTG AATCTCTCAG
CTTTCCTACG GAAGGCAATT ACAATCAAAG TAGCACCGTG GAAGATGTTT CTACAAGTAG CTTCTCCTCT TCTCTCTGGG
CCTTTGTTGA GTCAATACCT ACTACTCCTG CATCAGCTGC TGAAAGTGCT TTGGTGAATC GAGCTTTGAA TCGAATGTCT
AGCTTCAGCC GGGTAAAGAT CAGGCACACA AACATTACTG CAGGTAAAGA CACTGCAACT ACGAAGAAAG CAGGCAGAAA
GGGATTTTCA TTCCTTTTCT TCCCTATTCT TATTGCTTTA TGTGCTTTTT TGTGGGTTTT TGTTGGAAAC TTAAGATCAT
TAGGGAGATG TATCTCTCCT TGATTATTAT ATATCATGTA AATCCAAAGT TTTGCTGCTA GGTATATATT GTCTGGGATC
TCCCAGTTGT CTGGTACCTC CCGTAACTGC CAAGCAGTGC TGTTCTAACA TATTCTCAAA AATAAAAAAA ATATATAGTT
ATCTTTGTGA ATATTGAGGT CATTATAAGG CGTAGGGTAA GCCTGATGAA CCTTAATTGA AGAGATGGCA ATGTACAGGA
GTTTGCAGGG TGATATGGTA GCCAAGTTTT CAAACTCGTC TAATCTTATT TTTTTATTGG TTTATAAAGT TTTTTTGGGC
CCATGTAAAT CTTGTTTTTA TTAACCTGGA CAACATTTTA TTTTGGAGAT TGATTGTTCA TGGATAATAT CTCATTTTGT
GGAATGTGTC TTTGGATTTG TGATTATCTT TGTTGGTTAT AACGCCTCAT TATCATTAGA TTGTTATTGT TTAAAAAATA
ACCGGTCTGC AACTAAGTCT GAGAATCTGG ATGGTTGGAC AGAACAGGTT TGTTCATTAA ACCTGAGCAG ATCATGAAAC
TTAGTCAATG GATCAAGAAT CGTCTAAAAT TGGTCCAATC ATTGGATGGT TTCAGTAAAT TAGTTTGAAT TGCTTTTATT
TCCTTAAAAG TGTTTCTTGT ATTTTTTAGA CCATTTCATT ACTTTCATTA AACCAGTGTT TATATTTGAA AT

>Vigan.08G096600.01
ATGGGTGAGG CTTCAGGAGA TGGTTCCGCT GATTGTTTCA GCCAGATGAT GTCGTCGATG CCGGGCTTTC GCTTCCATCC
TACGGATGAG GAGTTGGTGA TGTACTATCT GAAGCGGAAG ATTTGTGGGA AGAGGCTGAA GCTCAACGTT ATTCGTGAAA
CCGATGTGTA TAAGTGGGAT CCTGAGGAGT TGCCTGGGCA ATCCATACTG AAAACTGGAG ATAGGCAGTG GTTCTTTTTC
TGTCACAGAG ATAGGAAATA TCCTAATGGT GCAAGGTCTA ATCGAGCCAC CAGACATGGA TACTGGAAGG CAACAGGAAA
GGATCGTAAT GTGATATGCA ATTCTAGGGC AGTTGGAGTG AAAAAAACCC TGGTTTTCTA CATAGGCAGA GCTCCTAGTG
GAACGCGGAC TGATTGGGTT ATGCACGAAT ACACCATGGA TGAAGAGGAG CTTAAGAGAT GCCAAGGTGT TAAGGACTAC
TATGCACTTT ATAAGGTTTT CAAGAAAAGT GGACCTGGTC CTAAAAATGG TGAACAGTAT GGTGCACCAT TTAATGAACA
AGAGTGGGCA GCGGATGATG ACATTGTGGA TTTTAATAAT AACATAACTG ATCAGGAGGA TCCAAATGTT GTCCCTGAGA
ATGGGAGTGC ACTGCATCCT TTGCTTGATG ATGAAATCAA TGACATCATT AGAGAAATTT TGGATGATGA GCTTGTCCTT
GATCAGCAGC ATGTGAATGG TTATCTTGAC TTTCCTCAGG TTGTTACTGA AGAAACACAA AGTACTGTTG TGGATCAGTT
CTCTGAGGTG CTTATGTACC GTGAGACAAC CGATCCTAGC TGTCAATATT TTGATGTGCA GCCCAGCTTT GACTTCAACC
AGCCAGTTAC TTCTCATTTA CAAGTTTCTG AAGCTTCTGA GGTTTCTTCT GCCTCCAACA TCCAAAGAAA GGGGCTTGAC
TTGGATAAGG TTGGCTTTTT GGAAATTAAT GATCTCATTG ATAATGATCC TGCTTTGGCA AATGTGGAAA ATCCGGTGGA
GTACCCGCAT TTTGAAGATG GGTTAAGTGA ACTTGATCTG TACCAAGATG CAGAGATGTT TCTTCGTGAC CTGGGGCCAA
TAATTCACGA AACAGATTCA CATGCATATA CAAATGCCCT TGTCAGCAAC AATATCGAAA GTCAAAGTTA CCAGTTGCAA
TCCGGTTCTG AGGATGCCAA CCAAACTGTT GGTGAATTCT GGATGCACGA TGAAAGAAAC ACCCTGATTC CATCAGAAGA
AGGCTTTGTC GATTCTTTCT CACTATCATC CCCAGGTGTT GTATGTGAAT CTCTCAGCTT TCCTACGGAA GGCAATTACA
ATCAAAGTAG CACCGTGGAA GATGTTTCTA CAAGTAGCTT CTCCTCTTCT CTCTGGGCCT TTGTTGAGTC AATACCTACT
ACTCCTGCAT CAGCTGCTGA AAGTGCTTTG GTGAATCGAG CTTTGAATCG AATGTCTAGC TTCAGCCGGG TAAAGATCAG
GCACACAAAC ATTACTGCAG GTAAAGACAC TGCAACTACG AAGAAAGCAG GCAGAAAGGG ATTTTCATTC CTTTTCTTCC
CTATTCTTAT TGCTTTATGT GCTTTTTTGT GGGTTTTTGT TGGAAACTTA AGATCATTAG GGAGATGTAT CTCTCCTTGA

>Vigan.08G096600.01
MGEASGDGSA DCFSQMMSSM PGFRFHPTDE ELVMYYLKRK ICGKRLKLNV IRETDVYKWD PEELPGQSIL KTGDRQWFFF
CHRDRKYPNG ARSNRATRHG YWKATGKDRN VICNSRAVGV KKTLVFYIGR APSGTRTDWV MHEYTMDEEE LKRCQGVKDY
YALYKVFKKS GPGPKNGEQY GAPFNEQEWA ADDDIVDFNN NITDQEDPNV VPENGSALHP LLDDEINDII REILDDELVL
DQQHVNGYLD FPQVVTEETQ STVVDQFSEV LMYRETTDPS CQYFDVQPSF DFNQPVTSHL QVSEASEVSS ASNIQRKGLD
LDKVGFLEIN DLIDNDPALA NVENPVEYPH FEDGLSELDL YQDAEMFLRD LGPIIHETDS HAYTNALVSN NIESQSYQLQ
SGSEDANQTV GEFWMHDERN TLIPSEEGFV DSFSLSSPGV VCESLSFPTE GNYNQSSTVE DVSTSSFSSS LWAFVESIPT
TPASAAESAL VNRALNRMSS FSRVKIRHTN ITAGKDTATT KKAGRKGFSF LFFPILIALC AFLWVFVGNL RSLGRCISP*