GBrowse Details

Vigan.08G092500.01

Basic Information:
Name: Vigan.08G092500.01
Multiple alignment
Variant Information
Position: Chr08:7738942..7742378 (+ strand)
Length: 3437
Functional Information:
Description: Similar to 60S ribosomal protein L3. [V5N8U2, Phaseolus vulgaris]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L3 (IPR000597)
Translation protein, beta-barrel domain (IPR009000)
Ribosomal protein L3, conserved site (IPR019926)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:118.02,384.69,179.41,94.69,280.76,475.71,257.64,146.82
Arabidopsis thaliana homolog: AT1G43170.1, AT1G61580.1
Automatic updates:
Name: NM_001289340 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 60S ribosomal protein L3 (LOC100819132), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:7738942..7739288 (+ strand)
Length: 347
Type: five_prime_UTR
Position: Chr08:7739289..7739373 (+ strand)
Length: 85
Type: CDS
Position: Chr08:7739895..7740005 (+ strand)
Length: 111
Type: CDS
Position: Chr08:7740439..7740743 (+ strand)
Length: 305
Type: CDS
Position: Chr08:7741179..7741588 (+ strand)
Length: 410
Type: CDS
Position: Chr08:7741682..7741940 (+ strand)
Length: 259
Type: CDS
Position: Chr08:7741941..7742378 (+ strand)
Length: 438
Type: three_prime_UTR

>Vigan.08G092500.01 class=Sequence position=Chr08:7738942..7742378 (+ strand)
CACAAAGGAA GTAGGGTTTT AGTTCAGTGC CTCTCTACTC GGGACTTTGT TCGCCGTAGC AGCAGGAGCA GTCTCAGGTT
CTCCTCTCTC CGATCTCTCT GCTCATTTGT GTTTTCTGGT TTTCCTATTC AGTTATCTGC ATTCCTTGAT ATCTTTCGCT
GCAATTCGTA GCAAAATTTA TGTTCATTTC AATTCTTTGT GGTGTCTGTA CTTTTCCGAA TCCGGAAGCA GTTGCAAGGA
CAAATTGTTT CCTTGGCTTT TGTGTTCAAG TTATCTCCTA TTTTATGCTC ACTTTTTCGT TTGAATGAAT TACTCACGTT
TTTTTATTTG CATTTTCTCT ATATAGGATG TCTCACAGGA AGTTCGAACA CCCAAGGCAC GGGTCTCTGG GATTTCTCCC
CAGGAAGCGT GCTGCTCGTC ACAGGGGAAA AGGTTTATTT TTCTTCTGTT TTTATCACTC CTTATCCTCT AAGTGTGTGT
TTTGCCTTTT ATTTAATTAT CGATTTCACT ATAGTTACAC ATGTAATTTT GAATGCTGAA TATTGTTCTT GCTTAAGAGA
TCCAATGATG AATTACCGCC ACATCAATTT TGAATGTTGT TTTAAACTCC TAATGCTGTT TTGATTTACT CTATCAGGTT
TTTAAGCTAT TGAATTGTAA AACATTTGTA TTTTTATGAT TTTTAACGAG GAGCCTGTTT TAACTATAGT TACACATGTA
ATTTTGAATG CTGAATATTG TTCTTGCTTA AGAGATCCAA TGATGATTTA CCTCCACATC AATTTTGAAT GTTGTTTTAA
AATCCTAATG CTGTTTTGTT TTACTCTATC AGGTTTTTAA GCTATTGAAT TGTAAAACAT TTGTATTTTT ATGTTTTTTT
AATGAGGAGC CTGTTTTAAT TGGTTTTATA ACACCATGAT TTTGATATCC TGTAATTATC ATTAACTTTG CAGTGAAGGC
ATTCCCTAAG GATGATCCAT CCAAGTCACC CAAGTTGACT GCATTCTTGG GTTACAAGGC TGGTATGACT CACATTGTTA
GAGAGGTCGA GAAGCCAGGA TCAAGTAAGT TCCGTTCTGT CCATCTTTTT TTTTTTAATT TAGGTTAATG AATATATGAA
TGTTGTCAAT CCTGTTTTTT AGTCGGATAC ATTGTAGATT GTCAACTACA GGTCTTTTAT CGGTGTGATT TGTTGCCGTA
TTTTTGCATG TTGAGAGCAT GTAAATAATG ATACGGATAA TGGAATTGAA ATTAACCGTT TATAATTTTC GGTTTTACAT
TATCACTTCA TTTTAGTTAA GTTTTCATCG GTTTAGAAAG TATTTAACTG GATGCTTTCT TTGGTTTTCA AGTTTGTAAT
GCCAATATTA TTTCATTGTT TCACTACTAC CTGTTTTCAA CAGTATAGCA TTATTTAACC TTTTCATTTA GCTTTCTGTT
TGATGTTGAT ATTATGGAAC CTGTATTCAT TTAACTGTAT TTATGCTTTT ATATCAGAGC TTCACAAGAA GGAAACTTGT
GAGCCTGTGA CAATTATTGA GACCCCTCCC ATGGTTGTTG TTGGTGTTGT GGGTTATGTG AAAACTCCCC GTGGTCTTCG
TACCTTGAAC ACTGTGTGGG CTCAGCACTT GAGCGAGGAA CTGAAGCGTA GGTTCTATAA GAACTGGTGC AAGTCCAAGA
AGAAGGCTTT CACCAAGTAC TCAAAGCAGT ATGAAACTGA CGAGGGGAAG AAGAACATTG AGACTCAGCT GGAGAAACTA
AAGAAGTATG CTACTGTGAT TCGTGTTTTG GCTCACACTC AGGTGCTTAC ATACTTTTGT TTTAACTTTA TTTCATTTTT
TCCGGTGGTG GTTTTATACA TGGAACTTTG GGCTTGTCAT CATGTTTAAC CATTTACCCC ACTCTTACGT ATGTTTTTCG
TGCCTATTGA GAATGATGAA ATTCATGTGC TAACGCAGCA TCATAAAATT TGGTGCTATG AGCGGCATTT TCCACACGAG
ATTTCTGACT CCTAACTGTT TCAAATATTT CTTTTTGGGC TGTTCCAGTG TTATCTGCGC AACTATAGTC TTGTCATTGT
CTGCTTTTGG CCATTATTCG TACTGATGTC GAATTGTAAT ACTGGTTTCT TTCGGAGTTG TGTTTGTAAA ATTCCGAATT
CAAGGTCACT TCCATTTATC AAGAGTTGTT TATTGAAATA TTATTCTAAT CTTAGCTTTC TGCCTTTGAT CTTACAGATC
AGGAAAATGA AAGGGTTGAA GCAGAAGAAA GCCCATATCA TGGAAATTCA GGTTAATGGT GGTTCTATTG CACAGAAGGT
GGACTTTGCG TACAGTTTCT TTGAGAAACA GGTCCCTATT GATGCTGTGT TCCAGAAAGA TGAGATGATT GACATCATAG
GAGTGACAAA GGGTAAGGGT TATGAGGGTG TTGTAACTCG TTGGGGTGTT ACTCGTCTTC CCCGTAAGAC TCACAGGGGT
TTGAGGAAGG TAGCTTGTAT TGGTGCCTGG CACCCTGCCA GAGTTTCATT CACTGTTGCC AGGGCTGGTC AGAATGGATA
CCACCACAGG ACCGAGTTGA ACAAAAAGGT TTACAAGCTC GGTAAAGCTG GGGATGAGTC TCACTCTGCT CTTACCGAGT
TCGATAGGTG AGTTTAGTGT TTTTGGTTAT GGTTACCTGC AATAAGTTAT GCAGTAATTT TTGTTCAAGT CCAACTAACC
CTGCATTATT CGGGATGCAG GACTGAGAAA GACATTACCC CCATGGGTGG GTTCCCTCAC TATGGTATTG TGAAGGACGA
TTTCATCATG GTGAAAGGAT GCTGTGTTGG CCCCAAGAAA AGAGTTCTTA CATTGCGCCA GTCCCTGCTT AAGCAGACTT
CTCGTGTTGC CCTTGAGGAG ATCAAACTCA AGTTTATCGA TACCTCCTCA AAGTTTGGAC ACGGTCGCTT CCAGACCACA
CAGGAGAAGC AGAAGTTCTT TGGACGCCTC AAAGCATAAA TATGATAATC GGATGGAAAA GCTGGAACTT ACCTTTTAAA
ATTCTATTTG GTTTCCATCG CTCCTTTTAA ACTTTGTAGT GTTTTTCCTT TTTGGCATTA TGGATTGTAG TGTTTCCCTT
CGTAATTTCG CTTAACTTTT GTTCGAGGGA GATTTCTCTA TTAAAAATAC TTCAAATTTT GTTTATGATT TTATTTATAT
AATGTCTCAG TTTTAGTTAG TGGTTTGCAT ATTATTTTTT GCTGAAACTT AATTCATAAG TGACATGCTA GCCGTTTTCG
ACATTTTGGT ACTGTGGACC GTTTGCTGTA TGTTTTTAAT TAGATTTTGA TGGACCGTAT GTGCTTGAAG AATTATTTAG
TTGATAATTT TATCCTGAAC CTTAGTAGTA ATGTGGAATA ACCTTGAAGG AGTTGAATCA TGTAATGTGG ATTCTAT

>Vigan.08G092500.01
CACAAAGGAA GTAGGGTTTT AGTTCAGTGC CTCTCTACTC GGGACTTTGT TCGCCGTAGC AGCAGGAGCA GTCTCAGGTT
CTCCTCTCTC CGATCTCTCT GCTCATTTGT GTTTTCTGGT TTTCCTATTC AGTTATCTGC ATTCCTTGAT ATCTTTCGCT
GCAATTCGTA GCAAAATTTA TGTTCATTTC AATTCTTTGT GGTGTCTGTA CTTTTCCGAA TCCGGAAGCA GTTGCAAGGA
CAAATTGTTT CCTTGGCTTT TGTGTTCAAG TTATCTCCTA TTTTATGCTC ACTTTTTCGT TTGAATGAAT TACTCACGTT
TTTTTATTTG CATTTTCTCT ATATAGGATG TCTCACAGGA AGTTCGAACA CCCAAGGCAC GGGTCTCTGG GATTTCTCCC
CAGGAAGCGT GCTGCTCGTC ACAGGGGAAA AGTGAAGGCA TTCCCTAAGG ATGATCCATC CAAGTCACCC AAGTTGACTG
CATTCTTGGG TTACAAGGCT GGTATGACTC ACATTGTTAG AGAGGTCGAG AAGCCAGGAT CAAAGCTTCA CAAGAAGGAA
ACTTGTGAGC CTGTGACAAT TATTGAGACC CCTCCCATGG TTGTTGTTGG TGTTGTGGGT TATGTGAAAA CTCCCCGTGG
TCTTCGTACC TTGAACACTG TGTGGGCTCA GCACTTGAGC GAGGAACTGA AGCGTAGGTT CTATAAGAAC TGGTGCAAGT
CCAAGAAGAA GGCTTTCACC AAGTACTCAA AGCAGTATGA AACTGACGAG GGGAAGAAGA ACATTGAGAC TCAGCTGGAG
AAACTAAAGA AGTATGCTAC TGTGATTCGT GTTTTGGCTC ACACTCAGAT CAGGAAAATG AAAGGGTTGA AGCAGAAGAA
AGCCCATATC ATGGAAATTC AGGTTAATGG TGGTTCTATT GCACAGAAGG TGGACTTTGC GTACAGTTTC TTTGAGAAAC
AGGTCCCTAT TGATGCTGTG TTCCAGAAAG ATGAGATGAT TGACATCATA GGAGTGACAA AGGGTAAGGG TTATGAGGGT
GTTGTAACTC GTTGGGGTGT TACTCGTCTT CCCCGTAAGA CTCACAGGGG TTTGAGGAAG GTAGCTTGTA TTGGTGCCTG
GCACCCTGCC AGAGTTTCAT TCACTGTTGC CAGGGCTGGT CAGAATGGAT ACCACCACAG GACCGAGTTG AACAAAAAGG
TTTACAAGCT CGGTAAAGCT GGGGATGAGT CTCACTCTGC TCTTACCGAG TTCGATAGGA CTGAGAAAGA CATTACCCCC
ATGGGTGGGT TCCCTCACTA TGGTATTGTG AAGGACGATT TCATCATGGT GAAAGGATGC TGTGTTGGCC CCAAGAAAAG
AGTTCTTACA TTGCGCCAGT CCCTGCTTAA GCAGACTTCT CGTGTTGCCC TTGAGGAGAT CAAACTCAAG TTTATCGATA
CCTCCTCAAA GTTTGGACAC GGTCGCTTCC AGACCACACA GGAGAAGCAG AAGTTCTTTG GACGCCTCAA AGCATAAATA
TGATAATCGG ATGGAAAAGC TGGAACTTAC CTTTTAAAAT TCTATTTGGT TTCCATCGCT CCTTTTAAAC TTTGTAGTGT
TTTTCCTTTT TGGCATTATG GATTGTAGTG TTTCCCTTCG TAATTTCGCT TAACTTTTGT TCGAGGGAGA TTTCTCTATT
AAAAATACTT CAAATTTTGT TTATGATTTT ATTTATATAA TGTCTCAGTT TTAGTTAGTG GTTTGCATAT TATTTTTTGC
TGAAACTTAA TTCATAAGTG ACATGCTAGC CGTTTTCGAC ATTTTGGTAC TGTGGACCGT TTGCTGTATG TTTTTAATTA
GATTTTGATG GACCGTATGT GCTTGAAGAA TTATTTAGTT GATAATTTTA TCCTGAACCT TAGTAGTAAT GTGGAATAAC
CTTGAAGGAG TTGAATCATG TAATGTGGAT TCTAT

>Vigan.08G092500.01
ATGTCTCACA GGAAGTTCGA ACACCCAAGG CACGGGTCTC TGGGATTTCT CCCCAGGAAG CGTGCTGCTC GTCACAGGGG
AAAAGTGAAG GCATTCCCTA AGGATGATCC ATCCAAGTCA CCCAAGTTGA CTGCATTCTT GGGTTACAAG GCTGGTATGA
CTCACATTGT TAGAGAGGTC GAGAAGCCAG GATCAAAGCT TCACAAGAAG GAAACTTGTG AGCCTGTGAC AATTATTGAG
ACCCCTCCCA TGGTTGTTGT TGGTGTTGTG GGTTATGTGA AAACTCCCCG TGGTCTTCGT ACCTTGAACA CTGTGTGGGC
TCAGCACTTG AGCGAGGAAC TGAAGCGTAG GTTCTATAAG AACTGGTGCA AGTCCAAGAA GAAGGCTTTC ACCAAGTACT
CAAAGCAGTA TGAAACTGAC GAGGGGAAGA AGAACATTGA GACTCAGCTG GAGAAACTAA AGAAGTATGC TACTGTGATT
CGTGTTTTGG CTCACACTCA GATCAGGAAA ATGAAAGGGT TGAAGCAGAA GAAAGCCCAT ATCATGGAAA TTCAGGTTAA
TGGTGGTTCT ATTGCACAGA AGGTGGACTT TGCGTACAGT TTCTTTGAGA AACAGGTCCC TATTGATGCT GTGTTCCAGA
AAGATGAGAT GATTGACATC ATAGGAGTGA CAAAGGGTAA GGGTTATGAG GGTGTTGTAA CTCGTTGGGG TGTTACTCGT
CTTCCCCGTA AGACTCACAG GGGTTTGAGG AAGGTAGCTT GTATTGGTGC CTGGCACCCT GCCAGAGTTT CATTCACTGT
TGCCAGGGCT GGTCAGAATG GATACCACCA CAGGACCGAG TTGAACAAAA AGGTTTACAA GCTCGGTAAA GCTGGGGATG
AGTCTCACTC TGCTCTTACC GAGTTCGATA GGACTGAGAA AGACATTACC CCCATGGGTG GGTTCCCTCA CTATGGTATT
GTGAAGGACG ATTTCATCAT GGTGAAAGGA TGCTGTGTTG GCCCCAAGAA AAGAGTTCTT ACATTGCGCC AGTCCCTGCT
TAAGCAGACT TCTCGTGTTG CCCTTGAGGA GATCAAACTC AAGTTTATCG ATACCTCCTC AAAGTTTGGA CACGGTCGCT
TCCAGACCAC ACAGGAGAAG CAGAAGTTCT TTGGACGCCT CAAAGCATAA 

>Vigan.08G092500.01
MSHRKFEHPR HGSLGFLPRK RAARHRGKVK AFPKDDPSKS PKLTAFLGYK AGMTHIVREV EKPGSKLHKK ETCEPVTIIE
TPPMVVVGVV GYVKTPRGLR TLNTVWAQHL SEELKRRFYK NWCKSKKKAF TKYSKQYETD EGKKNIETQL EKLKKYATVI
RVLAHTQIRK MKGLKQKKAH IMEIQVNGGS IAQKVDFAYS FFEKQVPIDA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR
LPRKTHRGLR KVACIGAWHP ARVSFTVARA GQNGYHHRTE LNKKVYKLGK AGDESHSALT EFDRTEKDIT PMGGFPHYGI
VKDDFIMVKG CCVGPKKRVL TLRQSLLKQT SRVALEEIKL KFIDTSSKFG HGRFQTTQEK QKFFGRLKA*