GBrowse Details

Vigan.08G090500.01

Basic Information:
Name: Vigan.08G090500.01
Multiple alignment
Variant Information
Position: Chr08:7548449..7551173 (- strand)
Length: 2725
Functional Information:
Description: Similar to thioredoxin Y1, chloroplastic. [XP_008237848.1, Prunus mume]
GO: Biological Process: glycerol ether metabolic process (GO:0006662)
Biological Process: cell redox homeostasis (GO:0045454)
Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
InterPro: Thioredoxin (IPR005746)
Thioredoxin-like fold (IPR012336)
Thioredoxin domain (IPR013766)
Thioredoxin, conserved site (IPR017937)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.94,3.10,17.11,42.97,13.32,17.14,16.54,11.66
Arabidopsis thaliana homolog: AT1G76760.1
Automatic updates:
Name: NM_001250114 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max thioredoxin Y1-like protein (LOC100306580), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250979 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500683 (LOC100500683), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:7548449..7548878 (- strand)
Length: 430
Type: three_prime_UTR
Position: Chr08:7548879..7548944 (- strand)
Length: 66
Type: CDS
Position: Chr08:7549911..7550088 (- strand)
Length: 178
Type: CDS
Position: Chr08:7550202..7550290 (- strand)
Length: 89
Type: CDS
Position: Chr08:7550685..7550879 (- strand)
Length: 195
Type: CDS
Position: Chr08:7550880..7551173 (- strand)
Length: 294
Type: five_prime_UTR

>Vigan.08G090500.01 class=Sequence position=Chr08:7548449..7551173 (- strand)
TAGTACGCGG AAATTGTTTT TTATTATTTA ACCAACCGTA ACATTTATAA AAAAAAAACA AAGGAAAAGG AAAAGGAAAA
GAGTGTTGGG ATTGGGAGAG TACGAGTCAG AGCAAAGCAG CAGCTTGGGT TGGACCTTGG AGAGTCCGTT TGTTCCTTCC
CTTTGTTTTC TTTAGATATT TCTTTTTTTT TTTCTGTCGT TTCATTGCAA ACTGATACTT CGGTATCCAA ACACACCTCA
TCTACATTTT CTCATCTCCA GCACAAACAA ACACGTGCAT CTCCTTTCGT TCTCATGGCG ATTTCCGTTT CCGCATCCTC
CGCGATTTCT TCTTTGAGTT CTGAACGTTC TACGCGCTTG CCGTCATCCT TTACCTCTGC ATCTTCTTCC GCCAAACAGT
TCTCGCTGCA ATTCCCCTCG CGCACGCACC TTCTTCGGAT CAGTACTCCA CGCGCTCCTA CTTCCCCGCG GCCACGATTC
CTTCTTCAGG TAACCTAAAC CACGCTATCT GCTTTCATTT TCTATTGTAC GTACGACTTT CTTCATTGAT TAGTGAATCA
AGGAACACGC GTGATTATTA TTATTATTAT TATTACTATT ATTATTATTA ATCATAAATT GTGCGTAAAT AGAAATTATA
TTAGTGGTAC AATAGTAAAA ATTACATTTG GTCCCTAAAT ATGTATTTAA CCGTGAAATT AGTAGCTGAA TGTGTGTTTC
AGTAGTCAAA GTAATTCTCA AATTTGTGAG GTGAAGAATA AATTGAATGA AGTGTTAACT CAAGGACCGT GAATATTAAT
TTGATTGTTT AATTTTGTTA AGCTGATCAA CAGTTTTAGC CAATTATGGC CTTATAAGTA TTTTTGTGTG TTGTTCTGTG
TAGGTTCAAG CTAAGAAACA AACCTTTAAC TCTTTTGATG ATTTGCTTGC CAATTCTGAA AAGCCTGTAT TAGTTGATTT
CTATGCGACC TGGTAAGTTT CTCCCTCCGT TTTCTGTTTT CTCCGTATTT GGCTCGCAGG GTGTTATGCT GGTTTTGTTA
ACTGGTGCTT TTTGAAGTTG AAGCTGTTTT GTTAACTTGG TACAGGTGTG GTCCTTGTCA ATTCATGGTT CCCATTCTCA
ATGAAGTAAG CACTCGGCTT AAGGATAAGA TACAGGTGGT GAAGATTGAT ACTGAGAAAT ATCCCAGCAT TGCTGACAAA
TACAGAATTG AGGCATTGCC AACTTTCATC ATGTTTAAGG ATGGAGAACC TTATGATCGT TTTGTAAGTC AATTTTTTTT
TATGAGTTCT GCTTTCCTCG CACCTGGTGG TTAATCGTGT CTGTGTGACC CTTTATAATA TGTGGGAGTT TCTGGTTCTG
CTTCTGCAAT GACTCCAAAC ACTTACATTT GGCCTAAAAT GGCATGCATG ACATTGCATT AAAATTTGAA TTGTGAAACC
GAATTTAGTG TTTCTATTTG AAAGTACATG TCCATCAGTA ATGCAGCAAT GCTCTGAGAT ATACTAAACA TAGAATTAAC
AATGCTACTA CTTTTCTTTT GTTCTGTTAG GAATTTGAAT TTGTAGCGTG AAGGGTCCAA ACCATCATAA AAATTCCTTT
GACTGCAAAG CCAGCTAATA AAAGAAGTAG CGATCTTTTT GGCCTTTTAT GGGGAACTGC CTGAAGTTAG TTCTTATGCT
ACAAAAACTT GTAGAGCATC TAAAAGAATA ATCTCGTTCC TAATTTTTCT TAAAACTTTG ATATTGGCCT ATTCACCTTT
ATATTCTCCC AGGCTTGTTC ACTTTAACAG AATGAAAGCA AATTTGATTT TATTATAATG AAAAGAGCCT AATTGCTAGT
TTCGTACATC CATTCAAGAA TGTTTAAAAT ATAGTCTTCT GTCTGCTGTC AATAATAGCA CAAGTCTCAT GAAATTTCTA
ATGTTTTCCC CTATCATCAT ATTTGCGGGA AGGTATATGT AGCTTGAAAT GATCTGGTCT TGAGTTTGTC TGTTTGCAGG
CTTTTCTGTA ATGTTCTTGA AATTTGTTGG TAATGTTGGT GGGAGACTAG ACAGATTTTG TTGAGCTGAA TCTGTTATTT
ACTAATGATT TTTTGTTATG AAGCTACATA GACATTTGCT TATTTGACAA AACAAAATAA AACAAGGGTG TTGTCTGTTA
TCTCCAAATT CTAAACAACC ATCTTCACAT TCTAAGCAAG AATTTGTTTT TGGTCTTGAT GACTTCCAGG AGGGAGCATT
GAATGCAGAT CAGCTTATTG AACGCATAGA AGCCGGTCTG AAGGTTGAAC AATAACCCTA GTAAGTCTCT ATTATTACAC
TCATTATTAT TGTATTAAAG ATGCTCAAGA ACATCTCCCC AATAATCGCT GTCCTCTAAA CTCCTTATTG TTTTAATTTT
TTCAGCTTTG ATGAAGTCAG AAAGAAGCTT GTCCATTGGA ATGTTCGATC ACATACATGA TGTGACCGAC TTGAGGATCA
TTAGTTGATT GAACCTAGAC CGACTTGAGG ATCACTAGTT GATTCAACCA CATTAGACAT TTTTTGAAGT GATCATTACC
TTTCATAAGT TAATTTTTGC CCCTTATTTA GACTCCGTCC TCTTGATCTA TAATTTATTT TCATTTTCTG AGGCTTAAAA
ATAGTGCAAT TATAGGGAGA TTAAAGTTGG TCAATGTTTG CTATATACTG ATTGAATTGC ATGGGAAATG CTTAATGTGA
TACAC

>Vigan.08G090500.01
TAGTACGCGG AAATTGTTTT TTATTATTTA ACCAACCGTA ACATTTATAA AAAAAAAACA AAGGAAAAGG AAAAGGAAAA
GAGTGTTGGG ATTGGGAGAG TACGAGTCAG AGCAAAGCAG CAGCTTGGGT TGGACCTTGG AGAGTCCGTT TGTTCCTTCC
CTTTGTTTTC TTTAGATATT TCTTTTTTTT TTTCTGTCGT TTCATTGCAA ACTGATACTT CGGTATCCAA ACACACCTCA
TCTACATTTT CTCATCTCCA GCACAAACAA ACACGTGCAT CTCCTTTCGT TCTCATGGCG ATTTCCGTTT CCGCATCCTC
CGCGATTTCT TCTTTGAGTT CTGAACGTTC TACGCGCTTG CCGTCATCCT TTACCTCTGC ATCTTCTTCC GCCAAACAGT
TCTCGCTGCA ATTCCCCTCG CGCACGCACC TTCTTCGGAT CAGTACTCCA CGCGCTCCTA CTTCCCCGCG GCCACGATTC
CTTCTTCAGG TTCAAGCTAA GAAACAAACC TTTAACTCTT TTGATGATTT GCTTGCCAAT TCTGAAAAGC CTGTATTAGT
TGATTTCTAT GCGACCTGGT GTGGTCCTTG TCAATTCATG GTTCCCATTC TCAATGAAGT AAGCACTCGG CTTAAGGATA
AGATACAGGT GGTGAAGATT GATACTGAGA AATATCCCAG CATTGCTGAC AAATACAGAA TTGAGGCATT GCCAACTTTC
ATCATGTTTA AGGATGGAGA ACCTTATGAT CGTTTTGAGG GAGCATTGAA TGCAGATCAG CTTATTGAAC GCATAGAAGC
CGGTCTGAAG GTTGAACAAT AACCCTAGTA AGTCTCTATT ATTACACTCA TTATTATTGT ATTAAAGATG CTCAAGAACA
TCTCCCCAAT AATCGCTGTC CTCTAAACTC CTTATTGTTT TAATTTTTTC AGCTTTGATG AAGTCAGAAA GAAGCTTGTC
CATTGGAATG TTCGATCACA TACATGATGT GACCGACTTG AGGATCATTA GTTGATTGAA CCTAGACCGA CTTGAGGATC
ACTAGTTGAT TCAACCACAT TAGACATTTT TTGAAGTGAT CATTACCTTT CATAAGTTAA TTTTTGCCCC TTATTTAGAC
TCCGTCCTCT TGATCTATAA TTTATTTTCA TTTTCTGAGG CTTAAAAATA GTGCAATTAT AGGGAGATTA AAGTTGGTCA
ATGTTTGCTA TATACTGATT GAATTGCATG GGAAATGCTT AATGTGATAC AC

>Vigan.08G090500.01
ATGGCGATTT CCGTTTCCGC ATCCTCCGCG ATTTCTTCTT TGAGTTCTGA ACGTTCTACG CGCTTGCCGT CATCCTTTAC
CTCTGCATCT TCTTCCGCCA AACAGTTCTC GCTGCAATTC CCCTCGCGCA CGCACCTTCT TCGGATCAGT ACTCCACGCG
CTCCTACTTC CCCGCGGCCA CGATTCCTTC TTCAGGTTCA AGCTAAGAAA CAAACCTTTA ACTCTTTTGA TGATTTGCTT
GCCAATTCTG AAAAGCCTGT ATTAGTTGAT TTCTATGCGA CCTGGTGTGG TCCTTGTCAA TTCATGGTTC CCATTCTCAA
TGAAGTAAGC ACTCGGCTTA AGGATAAGAT ACAGGTGGTG AAGATTGATA CTGAGAAATA TCCCAGCATT GCTGACAAAT
ACAGAATTGA GGCATTGCCA ACTTTCATCA TGTTTAAGGA TGGAGAACCT TATGATCGTT TTGAGGGAGC ATTGAATGCA
GATCAGCTTA TTGAACGCAT AGAAGCCGGT CTGAAGGTTG AACAATAA

>Vigan.08G090500.01
MAISVSASSA ISSLSSERST RLPSSFTSAS SSAKQFSLQF PSRTHLLRIS TPRAPTSPRP RFLLQVQAKK QTFNSFDDLL
ANSEKPVLVD FYATWCGPCQ FMVPILNEVS TRLKDKIQVV KIDTEKYPSI ADKYRIEALP TFIMFKDGEP YDRFEGALNA
DQLIERIEAG LKVEQ*