GBrowse Details

Vigan.08G089700.01

Basic Information:
Name: Vigan.08G089700.01
Multiple alignment
Variant Information
Position: Chr08:7492913..7496961 (+ strand)
Length: 4049
Functional Information:
Description: Similar to Tubby-like F-box protein. [I1NH23, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Tubby, C-terminal (IPR000007)
F-box domain (IPR001810)
Tubby, C-terminal, conserved site (IPR018066)
Tubby C-terminal-like domain (IPR025659)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:46.38,45.80,7.93,11.38,8.89,3.65,38.01,7.45
Arabidopsis thaliana homolog: AT1G25280.1, AT1G43640.1, AT1G76900.1
Automatic updates:
Name: NM_001255085 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max tubby-like F-box protein 8-like (LOC100810531), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:7492913..7494138 (+ strand)
Length: 1226
Type: five_prime_UTR
Position: Chr08:7494139..7494486 (+ strand)
Length: 348
Type: CDS
Position: Chr08:7494621..7494708 (+ strand)
Length: 88
Type: CDS
Position: Chr08:7495553..7495685 (+ strand)
Length: 133
Type: CDS
Position: Chr08:7495890..7496622 (+ strand)
Length: 733
Type: CDS
Position: Chr08:7496623..7496961 (+ strand)
Length: 339
Type: three_prime_UTR

>Vigan.08G089700.01 class=Sequence position=Chr08:7492913..7496961 (+ strand)
TATATATAAG GCTTCTCCAT ATTTCTTTTT ACATGTGTGT GGGGGTGGAT TTAATGAAGG CGTTGAGTCC GTGCCTCAGA
CAGAGTCAGC CTCTGTGTTG GAGAGAGAAA GAGAGAAAAG TTAGAGAGAG AAAGAGAGTT GTGATTTGTG AAGCACACAG
GATCTGAAAA CGTGTCACTG ACAAGACTTT GGAACATCAT GGTTAGTCAG CTATATCTTC ATCTAATGGC CTTGGGTGGT
TTTATGTGTA TGAACGCACC TTTGCTCTGT TCAATTTCTT ATCTTTTTAA TTTTTCTCCA CTTCTTCAAA GTTCTTTGCT
CCTTATTTAT TTTTTCCTTC GCCGTGTTTG GGGTGTGGGA AACTTCGAGA CCCTGGTGTT TTTGGATATG GTTCGTAATC
TTGAATTTGA ATTCTTTTTT CTTCCGGGTT TCTTGTTCGC CTTTCAAAGC TTCTGTCTCT TGGTTTTGTA AAATTTATAT
TTGGGTAGTC CCCGACGTGT TTCTTGCTGT GTAGTTTTGG GAACTTGCAA GGACATAAAT AAATTTATGT TTTGGTTCTA
GAATTCTTTT GGAATCTTGT TATTTGGTTA GCAAGAAAGT CGGTAGTCTA GAGCTTTGAT CTATTTTTCT GCTCTTTAAA
GATCTCGTTA TGTTGTTTGA TCTCAGCGTT TAGAAAGAAG ACCCCTCTTT TTCTCTTGTG TGCTTGTTTG TCTCAGCCCC
CCGTGCGTGT GAAGGGGTAT TTTATTCGAT TCATGGCCTA GTAAATTCTG CACCAAAAAA TAGGGAAATC AGATTCCACA
TATAGTTGAA GTTAGTATAA AAAGAAGAAC CTTCAGCAAG CCTTTTATTT TGGTTCAGTT GCTCCTATGT TAAGTTAGAT
TGAGGAGAAA CAAAAATTAG GTCTAAAAAC CCTTCAAAAA CATGTTTCTG ACTAAAGTAT GGAATTTTAG CCTTTAGGTC
CATGTGGGGC TTTCTTTTAT GAGAATCTTT GGTTTTATTT TTATTCATCC ACTTTGTGCT TAACCCAATC TGTCTTCCTT
CTCTTTTGCT TCTCGATCAC TGAGCATCGA AGATGGAATT TAAAATGAAG TTTGGTTTAT TTGCAGCTCG TCACTCTTCT
AAGGTTTCAG TTGTGAGATC CTCTTGGTGA CTAGAGTGGA ACATTTATTG TTTTAGTGGC TCTTTGGTTA TATATTAAGT
TCTGGGCTGT GAGTATATCA GTAGAGATGT CCTTCCGCAG CATAGTTCGT GATGTAAGGG ATGGAGTGGG AAGCCTATCT
AGGAGGAGCT TTGAGGTGAG GCTTCCTGGC CATAACAGGG GCAAGTCACG CAGTTCGGTC CACGAGTTGC AGGAGCAGCC
AGCGGTTATA CAGAACAGCC GGTGGGCTAG CCTTCCCCCT GAGCTCCTTC GCGATGTTAT TAATAGATTG GAAGCAAGCG
AGAGTACATG GCCTGCTCGT AAGCATGTCG TTGCATGTGC TGCCGTGTGC AAGTCCTGGA GAGAAATGTG CAAAGAAATT
GTCAGCAGTC CTGAATTCTG TGGGAAGATC ACTTTCCCTG TTGCCCTGAA GCAGGTAGAC TTTTTGTTCT TCTATCCTGT
GCCTAAAATA TGTGTAAAGT ATTTTGCTTT ATGTATAAAG AATATGAAAT TTGTTCCATG ACCAAAGTTT ACATTTTTAT
GCTTCGTTGA CTCTTGTCTT GTCTGCAGCC TGGGCATAGG AATGGAACCA TCCAGTGTTT CATTAAGAGA GACAAATCTA
AGCTGACATA CCATCTCTTC CTTTGCCTCA GTCCTGGTAA GCTTTCCTAT GTTGACACTA ACATATATGA ATTTATCTGA
TCATCTTGTT TTGTTCTTTC TTTAATTTTT GTGCTTATGG CCTCTGGTAT TGATATATTT ATTGACTTTT TCCTTTATCA
ATATGAGCCG TGGTCACCTT TGAACGTAGA ATTTATTGCT GTTTCTTTGA TTTTTGGTTC AGCTTAATTG CTTGTGATGT
TCATTTCTAT GTTTGGATTG GTGAAAAATG ATGGAATGGG GTGGTTGTTT TTGAAATGTA AGCTTTGCTA CCTTAAACTC
GATCTTACAG CTTACTTGTG GCATTGGGAA TTGTTTTTCC AAATTCAATT TTTATCAAAA CCTGTTGTTG TTAATGCAAT
TTAGATAGTA GTGTTCGAAT ATGATGTTCA ACTTCTTTGT TGTGGCCACT TACAAACTTA TTGTGTCGTT TTATTGTAGT
TTATGAAAGT AAGTAATAAC TACTGGGGCT CAAGTTACTT GAGGGTTGGG TGCTGATGTC ACTTCTAGTT TATTCTGGTC
ATATGATCCA TTCAAATAAT TCAACCTTGT TCCGATCATC ATTTCAACTT GGTGTGTGTT TGGCTTGTTA GCTTTGCTAA
AGTTTTAATG GTGTGTGATG CATGTCTATG CTTAGGTTGA CTTTAATTAC GAGAGAATAG TTCATGCCTT GCCTATCCTA
CTTGTTTTAT TGGTTGAAAT GTTTTCTATG CTAGGACGAG TATTGAGTTG ACAAATGTCT TGCCGTTACA CTATGCTGTA
AATATGCATT TAGTAATTTT ATGTTCCTGG CTATCATTGT TTTTGGGGCC TGTTCTGGAC TGATAAATGT GTTCGTGCAG
CCTTGCTTGT TGAAAATGGA AAGTTTCTTC TCTCTGCAAA AAGGACCAGA AGAACAACTT GCACGGAGTA TATTATATCA
ATGGATGCAG ATAACATATC GAGATCTAGT AGTACTTACA TTGGAAAACT GAGGTAAGAC TTAATTTTGG GACTGCTTGA
CATTCATTTT TGCATTAACA GTGATGGGTA CGACAATTTT TTGGTTGTTA CTGACTTGTA CAAGATCTAA ATTTATGCAT
AAGTTTTTAC ACCATCATTC AAGAAACTAC AAATCAATTG TTTCTTTACT TTGTAGTCAT CATGGACTTA CACTGTATTA
ATTTTTGGTT GTTCCAGGTC AAATTTTCTT GGCACCAAGT TCATAATTTA TGATACACAA CCACCTTACA ACAATGCTAT
GCTGTCTCCA CCTGGGCGAA GCCGTAGGTT TTCGAAAAAG GTTTCTCCAA AGGTCCCTAG CGGCAGCTAC AACATTGCCC
AGGTGACGTA TGAGTTGAAT GTTCTTGGTA CTAGGGGTCC GCGAAGGATG AATTGCACGA TGTACTCCAT TCCTGCATCA
TCCCTTGAGC CTAATGGCGT TGTCCCAGGC CAGCCAGAGC TCCTTTCTCG CCCCCTTGAG GATTCTTTCC GCAGTATATC
CTTCTCAAAA TCAATTGACA ATTCAACAGA GTTTAGCAGC TCTAGGTTCT CAGAAATTAT GGGAACCGGT AATGAAGACC
AGGAGGGAAA GGTGAGACCT TTAGTTCTCA AGAACAAGTC CCCAAGGTGG CATGAACAGT TGCAATGCTG GTGTCTCAAC
TTTAGAGGAA GAGTCACCGT TGCCTCTGTT AAGAATTTTC AGCTGATTGC TGCTGCCCCA CCAACCGCCG CCACCACGGT
GCCTGTAGTA GGATCAGGAC CTTCTCTATC CCAGCCAACA CAGTCTTCTT CTGACCATGA CAAGATTATT CTTCAGTTTG
GCAAGGTTGG CAAGGATATG TTTACAATGG ACTACCGATA CCCCCTCTCT GCATTTCAGG CTTTTGCCAT ATGCTTGACT
AGCTTTGACA CAAAATTGGC TTGTGAATAG TTTACAAGAA ATATATGTGT GGTAAGAGAA GTAGAATTTA ATCTTCATTT
TAGATACTGG TAGGAATGTT GAAGCTTCAT TAAGTCATTG TTCTCCTCAC GGTTAAACTG TAAAGTATGG AACAATCTCT
GCCCAATGTA CCTTTTTTCT TTTTGCTGTT CTTTTTCTTT TGAACATTTT TCCTTTTTTC TTGCCATTGC TCCTTTCTTT
CTGATAGTCA ATTTATGCTT TATAGTTATC TTTGTCAAAC TTTGATGATG TAGATTTCCA TACTTTGTGT AAATATGTAA
TGAAATTGTC GCCCAGAGGT ATTTATGAAA AATAAGAAAG TATTGTGAC

>Vigan.08G089700.01
TATATATAAG GCTTCTCCAT ATTTCTTTTT ACATGTGTGT GGGGGTGGAT TTAATGAAGG CGTTGAGTCC GTGCCTCAGA
CAGAGTCAGC CTCTGTGTTG GAGAGAGAAA GAGAGAAAAG TTAGAGAGAG AAAGAGAGTT GTGATTTGTG AAGCACACAG
GATCTGAAAA CGTGTCACTG ACAAGACTTT GGAACATCAT GGTTAGTCAG CTATATCTTC ATCTAATGGC CTTGGGTGGT
TTTATGTGTA TGAACGCACC TTTGCTCTGT TCAATTTCTT ATCTTTTTAA TTTTTCTCCA CTTCTTCAAA GTTCTTTGCT
CCTTATTTAT TTTTTCCTTC GCCGTGTTTG GGGTGTGGGA AACTTCGAGA CCCTGGTGTT TTTGGATATG GTTCGTAATC
TTGAATTTGA ATTCTTTTTT CTTCCGGGTT TCTTGTTCGC CTTTCAAAGC TTCTGTCTCT TGGTTTTGTA AAATTTATAT
TTGGGTAGTC CCCGACGTGT TTCTTGCTGT GTAGTTTTGG GAACTTGCAA GGACATAAAT AAATTTATGT TTTGGTTCTA
GAATTCTTTT GGAATCTTGT TATTTGGTTA GCAAGAAAGT CGGTAGTCTA GAGCTTTGAT CTATTTTTCT GCTCTTTAAA
GATCTCGTTA TGTTGTTTGA TCTCAGCGTT TAGAAAGAAG ACCCCTCTTT TTCTCTTGTG TGCTTGTTTG TCTCAGCCCC
CCGTGCGTGT GAAGGGGTAT TTTATTCGAT TCATGGCCTA GTAAATTCTG CACCAAAAAA TAGGGAAATC AGATTCCACA
TATAGTTGAA GTTAGTATAA AAAGAAGAAC CTTCAGCAAG CCTTTTATTT TGGTTCAGTT GCTCCTATGT TAAGTTAGAT
TGAGGAGAAA CAAAAATTAG GTCTAAAAAC CCTTCAAAAA CATGTTTCTG ACTAAAGTAT GGAATTTTAG CCTTTAGGTC
CATGTGGGGC TTTCTTTTAT GAGAATCTTT GGTTTTATTT TTATTCATCC ACTTTGTGCT TAACCCAATC TGTCTTCCTT
CTCTTTTGCT TCTCGATCAC TGAGCATCGA AGATGGAATT TAAAATGAAG TTTGGTTTAT TTGCAGCTCG TCACTCTTCT
AAGGTTTCAG TTGTGAGATC CTCTTGGTGA CTAGAGTGGA ACATTTATTG TTTTAGTGGC TCTTTGGTTA TATATTAAGT
TCTGGGCTGT GAGTATATCA GTAGAGATGT CCTTCCGCAG CATAGTTCGT GATGTAAGGG ATGGAGTGGG AAGCCTATCT
AGGAGGAGCT TTGAGGTGAG GCTTCCTGGC CATAACAGGG GCAAGTCACG CAGTTCGGTC CACGAGTTGC AGGAGCAGCC
AGCGGTTATA CAGAACAGCC GGTGGGCTAG CCTTCCCCCT GAGCTCCTTC GCGATGTTAT TAATAGATTG GAAGCAAGCG
AGAGTACATG GCCTGCTCGT AAGCATGTCG TTGCATGTGC TGCCGTGTGC AAGTCCTGGA GAGAAATGTG CAAAGAAATT
GTCAGCAGTC CTGAATTCTG TGGGAAGATC ACTTTCCCTG TTGCCCTGAA GCAGCCTGGG CATAGGAATG GAACCATCCA
GTGTTTCATT AAGAGAGACA AATCTAAGCT GACATACCAT CTCTTCCTTT GCCTCAGTCC TGCCTTGCTT GTTGAAAATG
GAAAGTTTCT TCTCTCTGCA AAAAGGACCA GAAGAACAAC TTGCACGGAG TATATTATAT CAATGGATGC AGATAACATA
TCGAGATCTA GTAGTACTTA CATTGGAAAA CTGAGGTCAA ATTTTCTTGG CACCAAGTTC ATAATTTATG ATACACAACC
ACCTTACAAC AATGCTATGC TGTCTCCACC TGGGCGAAGC CGTAGGTTTT CGAAAAAGGT TTCTCCAAAG GTCCCTAGCG
GCAGCTACAA CATTGCCCAG GTGACGTATG AGTTGAATGT TCTTGGTACT AGGGGTCCGC GAAGGATGAA TTGCACGATG
TACTCCATTC CTGCATCATC CCTTGAGCCT AATGGCGTTG TCCCAGGCCA GCCAGAGCTC CTTTCTCGCC CCCTTGAGGA
TTCTTTCCGC AGTATATCCT TCTCAAAATC AATTGACAAT TCAACAGAGT TTAGCAGCTC TAGGTTCTCA GAAATTATGG
GAACCGGTAA TGAAGACCAG GAGGGAAAGG TGAGACCTTT AGTTCTCAAG AACAAGTCCC CAAGGTGGCA TGAACAGTTG
CAATGCTGGT GTCTCAACTT TAGAGGAAGA GTCACCGTTG CCTCTGTTAA GAATTTTCAG CTGATTGCTG CTGCCCCACC
AACCGCCGCC ACCACGGTGC CTGTAGTAGG ATCAGGACCT TCTCTATCCC AGCCAACACA GTCTTCTTCT GACCATGACA
AGATTATTCT TCAGTTTGGC AAGGTTGGCA AGGATATGTT TACAATGGAC TACCGATACC CCCTCTCTGC ATTTCAGGCT
TTTGCCATAT GCTTGACTAG CTTTGACACA AAATTGGCTT GTGAATAGTT TACAAGAAAT ATATGTGTGG TAAGAGAAGT
AGAATTTAAT CTTCATTTTA GATACTGGTA GGAATGTTGA AGCTTCATTA AGTCATTGTT CTCCTCACGG TTAAACTGTA
AAGTATGGAA CAATCTCTGC CCAATGTACC TTTTTTCTTT TTGCTGTTCT TTTTCTTTTG AACATTTTTC CTTTTTTCTT
GCCATTGCTC CTTTCTTTCT GATAGTCAAT TTATGCTTTA TAGTTATCTT TGTCAAACTT TGATGATGTA GATTTCCATA
CTTTGTGTAA ATATGTAATG AAATTGTCGC CCAGAGGTAT TTATGAAAAA TAAGAAAGTA TTGTGAC

>Vigan.08G089700.01
ATGTCCTTCC GCAGCATAGT TCGTGATGTA AGGGATGGAG TGGGAAGCCT ATCTAGGAGG AGCTTTGAGG TGAGGCTTCC
TGGCCATAAC AGGGGCAAGT CACGCAGTTC GGTCCACGAG TTGCAGGAGC AGCCAGCGGT TATACAGAAC AGCCGGTGGG
CTAGCCTTCC CCCTGAGCTC CTTCGCGATG TTATTAATAG ATTGGAAGCA AGCGAGAGTA CATGGCCTGC TCGTAAGCAT
GTCGTTGCAT GTGCTGCCGT GTGCAAGTCC TGGAGAGAAA TGTGCAAAGA AATTGTCAGC AGTCCTGAAT TCTGTGGGAA
GATCACTTTC CCTGTTGCCC TGAAGCAGCC TGGGCATAGG AATGGAACCA TCCAGTGTTT CATTAAGAGA GACAAATCTA
AGCTGACATA CCATCTCTTC CTTTGCCTCA GTCCTGCCTT GCTTGTTGAA AATGGAAAGT TTCTTCTCTC TGCAAAAAGG
ACCAGAAGAA CAACTTGCAC GGAGTATATT ATATCAATGG ATGCAGATAA CATATCGAGA TCTAGTAGTA CTTACATTGG
AAAACTGAGG TCAAATTTTC TTGGCACCAA GTTCATAATT TATGATACAC AACCACCTTA CAACAATGCT ATGCTGTCTC
CACCTGGGCG AAGCCGTAGG TTTTCGAAAA AGGTTTCTCC AAAGGTCCCT AGCGGCAGCT ACAACATTGC CCAGGTGACG
TATGAGTTGA ATGTTCTTGG TACTAGGGGT CCGCGAAGGA TGAATTGCAC GATGTACTCC ATTCCTGCAT CATCCCTTGA
GCCTAATGGC GTTGTCCCAG GCCAGCCAGA GCTCCTTTCT CGCCCCCTTG AGGATTCTTT CCGCAGTATA TCCTTCTCAA
AATCAATTGA CAATTCAACA GAGTTTAGCA GCTCTAGGTT CTCAGAAATT ATGGGAACCG GTAATGAAGA CCAGGAGGGA
AAGGTGAGAC CTTTAGTTCT CAAGAACAAG TCCCCAAGGT GGCATGAACA GTTGCAATGC TGGTGTCTCA ACTTTAGAGG
AAGAGTCACC GTTGCCTCTG TTAAGAATTT TCAGCTGATT GCTGCTGCCC CACCAACCGC CGCCACCACG GTGCCTGTAG
TAGGATCAGG ACCTTCTCTA TCCCAGCCAA CACAGTCTTC TTCTGACCAT GACAAGATTA TTCTTCAGTT TGGCAAGGTT
GGCAAGGATA TGTTTACAAT GGACTACCGA TACCCCCTCT CTGCATTTCA GGCTTTTGCC ATATGCTTGA CTAGCTTTGA
CACAAAATTG GCTTGTGAAT AG

>Vigan.08G089700.01
MSFRSIVRDV RDGVGSLSRR SFEVRLPGHN RGKSRSSVHE LQEQPAVIQN SRWASLPPEL LRDVINRLEA SESTWPARKH
VVACAAVCKS WREMCKEIVS SPEFCGKITF PVALKQPGHR NGTIQCFIKR DKSKLTYHLF LCLSPALLVE NGKFLLSAKR
TRRTTCTEYI ISMDADNISR SSSTYIGKLR SNFLGTKFII YDTQPPYNNA MLSPPGRSRR FSKKVSPKVP SGSYNIAQVT
YELNVLGTRG PRRMNCTMYS IPASSLEPNG VVPGQPELLS RPLEDSFRSI SFSKSIDNST EFSSSRFSEI MGTGNEDQEG
KVRPLVLKNK SPRWHEQLQC WCLNFRGRVT VASVKNFQLI AAAPPTAATT VPVVGSGPSL SQPTQSSSDH DKIILQFGKV
GKDMFTMDYR YPLSAFQAFA ICLTSFDTKL ACE*