GBrowse Details

Vigan.08G082000.01

Basic Information:
Name: Vigan.08G082000.01
Multiple alignment
Variant Information
Position: Chr08:6651656..6656435 (+ strand)
Length: 4780
Functional Information:
Description: Similar to Uncharacterized protein. [I1LDP1, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Short-chain dehydrogenase/reductase SDR (IPR002198)
Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:52.67,33.68,30.58,101.25,33.59,30.60,34.65,37.51
Arabidopsis thaliana homolog: AT4G23430.2
Automatic updates:
Name: NM_001255939 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max WW domain-containing oxidoreductase-like (LOC100796920), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:6651656..6651738 (+ strand)
Length: 83
Type: five_prime_UTR
Position: Chr08:6651739..6651844 (+ strand)
Length: 106
Type: CDS
Position: Chr08:6652531..6652762 (+ strand)
Length: 232
Type: CDS
Position: Chr08:6652945..6653024 (+ strand)
Length: 80
Type: CDS
Position: Chr08:6653481..6653634 (+ strand)
Length: 154
Type: CDS
Position: Chr08:6654258..6654336 (+ strand)
Length: 79
Type: CDS
Position: Chr08:6654631..6654712 (+ strand)
Length: 82
Type: CDS
Position: Chr08:6655645..6655691 (+ strand)
Length: 47
Type: CDS
Position: Chr08:6655897..6656055 (+ strand)
Length: 159
Type: CDS
Position: Chr08:6656056..6656435 (+ strand)
Length: 380
Type: three_prime_UTR

>Vigan.08G082000.01 class=Sequence position=Chr08:6651656..6656435 (+ strand)
AGTTTCAGGC AGTGCAACGG TGCCATTTCT CTCTGATAGA TTTTGTCTGT TTGTTTGTGG GAGAGAATCA TAGTCACATA
GAGATGTGGC CATTCAGCAA GAAAGGGGCT TCTGGGTTTT CATCATCATC CACTGCTGAG CAAGTCACTG AAGGTCTTGA
TGGAACTGGT CTCACTGCCA TTGTTACAGG TTCCTCACTT CTTTTCCATT TTTTTTTCTT TTTTCTTGTA TATTTTTTTC
ATGGGTATCT TTCATCCATG TAAAAAAAAT ATTTTTTTTC CCTGATGACC TTTTTGTCTG ATCTTGCAGA CGCTGTTTTG
TCGTTGTAGT TGCCTTTGAA AAATCTTTTT TATTCTCATG TTCTTGCTGC AATTTTTCTT CTACTCAGTT CAGTGTTTGA
CTGAACAAAT TGAAAAATCT TTAATCTCGG GTTCAATTGG CTTATGTTAT TGCTAAGCCG GCTAAGCGGT AGTGCTTTTT
TACCTATAAA TTTGTTCGTC TTCTTAATGA GTTTTTTTAG TGTGCCCTAT TGTTGAATAC ACGTCTTGTG TGCTATATGA
GCATAGGACC AATGATTTAA ATTGGGGTCT CAATTGAGGT TCAGTTTGGA TCTTTGATAT TGAAAAGAAT CGCAGCTTAG
GCAGCCACTG TTGTGGTCAG GTTGCAGTCA TAGACAATCC AAAAATGTCG ACTTCGGGCT GAAATTCTTG CGGACTGATT
TTTAAATTTA AACCTTCTGT ATAAAAAAAC TACTGGGAAG TAGCATACTT TATCTTTTCA TATGTATGCT TTATTGAATT
CTTGCAATTA GCATGATAAA TAATTCTCGA AATGTTCCAT CGTTTAAATA TGGTATATGA ACATTGTGGT AACAGGAGCA
TCCAGTGGTA TTGGCACTGA GACTACACGT GTACTTGCTT TGCGAGGTGT CCATGTGATC ATGGGTGCGA GAAATATGGT
TGCTGCTAAA GATGTCAAAG AAACAATACT TAAGGAGATT CCCTCTGCAA AAGTTGATGC CTTGGAATTA GATCTCAGTT
CAATGGATTC TGTCAAAAAA TTTGCATCTG ATTTTAAGTC TTCTGGTCTT CCGTTGAACA TCTTGATGTA AGAAAAGCAG
ATGACATGAA TCATATTATC AACTAATTAT TCACTGTTTA TTTATCACTG TTTTTAAGTG AAGTCGTCAG TTACTGGTTC
TCTCTCATTG TGTGATGTTG CAAGTGATAT CTCTTAATCC CGATCATTCA AGAAAGCACA AGGGTAATAT TGTTTTCTGG
TTTGTTTAGA AACAACGCAG GAATTATGGC ATGCCCTTTC AAGCTCTCTG CAGACAAAAT TGAACTACAG TTTGCCACAA
ATCACATTGG TATGTTGAGA ATCTGATTGC ATAATTGAAG CTCTAACTAA CTGAGTGTTC TTCTATGTGG AAGTTCATTT
GATTACTGAT AGTGACACTG CTTCATATTC ACCGATATGT TATTCTATAA CATTTTGGCA CTTGAAGTAG TTTGTAGTTG
GTGTGGGCCA TATGATTCAT ATCTTTCTGA TTATTTAGCT AATTACTTAC TTGGATGATC AATATATAGT CATAGACGAA
CCAATCCTTT CTTTTTCTCT CTTGGGGTAA GTGGTCATAA GTCATTGAAA CATTGAATGT GTGTATTACT ATACTTAGGA
AGATACGATT GTCTCAACCT GTATAATTGG GTGATATTTT ACATTAAACA TCAAGTAGCT ACATTTTTGT TCTTTTAAAT
GCACTGACTG AGAGGATGTG TTGGTCATCT TAATACTGAT GTTTTTACTT AACATAATTT TGCAGGTCAC TTTTTATTGA
CAAATCTTTT GTTGGACACT ATGAAGAAAA CTTCACGTGA AACTAAGAAA GAAGGAAGAA TTGTTAATGT CTCTTCTGAG
GCTCACCGGT TTGCATATTC TGAAGGAATC CGTTTTGACA AAATTAATGA TAAGTCAAGG TAAATGTGTA ACCTAAATTC
AAATTACAAC AACATATGCT TTGGAGATGC CAGATCTGAT AAAAAAATCT GTTCATAGGA TCTGTAGATT ATTATTTTTT
TTTTGTCAGG AACTGTATGT GCAGAGGGCC TGTTTTTATT CCTGTGTAAA TCAACATATT TATAGAACAT AAGCAAAACA
GAAAAACTAT CAGTTAGCAA ACTGATAAAA GATAATGTCT AAAAAATAGG ATAAAACAGA TTTATCCTAT CAATTTACAT
AACTTTTATT TAAAATAAAA TAATACAAAG TCTAATGCAT TCTGTTTGTT AATTTGCTCG AACAGTTATA CATTCAACAG
GATCAAATGC TCATGGATAT AATTGTAGAC TCTATGCACT TCTTAGTTGC ATTTATTGCA TTAAGAATAG AGACATGATT
ATTGTAGTAC TTGTTGAAAT GAGAAGTGTT ATGCATATTC GATTATGTTT GCTTCCTTGT TTACAGCTGA AACAATTGAT
TCACTTTAAT TTTCTTGAAA AAATTAAGCA CGAAAACATG ATTCCTGTAC CTGTAGTGTT TGTCAATTGG AAAAGTGTTA
TATGACATGC ATATTTAATT ATGTTTGCTT CCTTGTGTTC AGTTACAGAG CCTGGGGTGC ATATGGGCAG TCAAAGCTTG
CCAACCTTTT ACATGCGAAT GAACTTTCAA GGCGTCTCAG GGTGAGCTGG CTTCTCCTCT ATAGTAGTGT AATTTACATA
TTATTTCGGA AGCTATAAAG TTATTTAGGA TCTAATATAG AATTACTTAA TTTTAAGAGT ATTTTTCTTT TTCACAATAC
ATCTTTCTTA ATACCTGCTG GTTATGCAAA TGCAATCGTG GATCATTGTG TTACTTTCTT ATTCTGCTTT TCAGTGGCTT
TCTTTTACTT TGTAGGGTTA GTAAAAACGT CACTTTGTTT TTGCCACATT TGATGTTTTT TTTGTATGAA ATTTTGCCTG
TTTCATCTTG AACAGGAAGA TGGGGTGGAG ATTTCTGCAA ATTCTCTTCA TCCTGGAGCA ATTACCACCA ATCTTTTCCG
TCATACTCCA ATAAACGGTA ACTATGGCAT TGTACTATTC ATGTCGTGTC TAAGAATTGT ATAGGTCCTG AGATTTGCTC
TACTAAATAA TGTATTCTGC ATTATCTTGT TTATTTACTT TTAATTTCCT TTTAAAATGC AGTAAGCTCG TATATGTGTG
CATTGTTTGT ATGTCATAAA TTTGGTACAC AAATATCTAT GAAAAACCAA TACCAAGAAT GATAATTGGT AGTAAACATT
TTTATTCGAA TGAAAGAAAC AATGCTCTTA TTGTTCTAGA ATCAGCTCCT CAGCAAACTG ACTTGGGGTT TATAAGGCCT
TGAGCTAGTT TATGGTGTGA TCCTACATAT GTTCTTTTCA TTCTACCACT CTTCTTCCCC CGATAACCTC TCTGCTAGGT
CTAATTAACT AGCAAACTCA GCAGCATAAC TTCTCTCCCC ATATTGTTAT GTTATGATTA CAAATATAGG GTGTATCTGG
ATTTTCATTT TCCATTAACA CTGTATCAAC ATGTTTGATA TCTTTTTTTC TTCAGATTAG TTATAAGTCA AATTTACCTC
AAAATTCCTG TTGACTTAAA AACTATAATG AGTTTTTTTT TTTTCAACTT TAATTAAGTT CAACTAAACT TAATATTAAT
TCAAACACAC ATAGACCTTC CAAATTATGG GTTTGGGACT CAAGTCTACA ACTGCTCCAT GTCTTGTTCC ACGTTGATGC
TTACATCAGG TCCATGATCA AGTGTTTTAT CAGTCAGCCC TGCTGAATTT TGAATACGGG CATACTGAAG AAAAGTTTGA
GCACTCATGT GAAGGACTTC TCATGGTCAC TTGGAAATGG TCTTTTTAGT TTTAAATATC AATTCATCTC TAAGAATTTT
GTTCATTTTT TCCATTTGAG ATAATGACTA GCTGAGTTTC ACGTACATAT TTTTGTTTGA TTTGTGCAGG TATAATTAAT
GTTATTGGTA GACTCGTTTT TAAAAACGTC CCGCAGGTAA CATCATTATA AATGTTGGAC ATTGACATGC TGTGATTTAG
GACATTTATT TGTTCTTAAT TATATCCAAT ACAATTTAAA ACGTTTATTA TGAAATTAAC CTGAAGATAA CTTACAATTC
ACCTAGATAT AGTATTAATA AGGATACAGT GTCCTCTAGT ATGAGAATCT TCTGACCTTG CTTGCTGACC TTGTAATGCA
GGGAGCAGCA ACAACATGCT ATGTAGCATT ACACCCACAA GTGAAGGGAG TTAGTGGCAA GTATTTTTCA GACAGTAATG
TTGCCCAACC AACCTCACTT GGGACTGATG CTGATTTGGC CAAGAAACTT TGGGATTTCA GCTTGAAATT GACCAAGTAA
AAAACCCAGG TATTATTTGT CAATGGAGAT AGCAGCTTCA ATTATACGAC TTAATGTAAT TTCTATCAAA ATTCTCATCA
CCTGTTGCAT AGGCATGAAT TTTAAAGTTC CTACTCCATT TTACTTGGCA CAGAATTTAT ACCAGTTTGT ATAAGAATAA
AACTTTCTGC ACTATTATTT TCTCTTGGAT GAGTACCTGG TAATGTATGG AAGTAGTAGT ATTACCAAAT GTTAGTTTCT
TGTTCAATGG TCACTCTCAA GTTCTATTCT CTTTTAGGTC TATTGAAGTT TTGCTTAGAT TTTTTAGGGA AATGTACTAA
CTTCCTTATA ATGTTCTTCA CCTTTTACTG TATTTGGGTT AGTTTAATCT GAGATGAAAC 

>Vigan.08G082000.01
AGTTTCAGGC AGTGCAACGG TGCCATTTCT CTCTGATAGA TTTTGTCTGT TTGTTTGTGG GAGAGAATCA TAGTCACATA
GAGATGTGGC CATTCAGCAA GAAAGGGGCT TCTGGGTTTT CATCATCATC CACTGCTGAG CAAGTCACTG AAGGTCTTGA
TGGAACTGGT CTCACTGCCA TTGTTACAGG AGCATCCAGT GGTATTGGCA CTGAGACTAC ACGTGTACTT GCTTTGCGAG
GTGTCCATGT GATCATGGGT GCGAGAAATA TGGTTGCTGC TAAAGATGTC AAAGAAACAA TACTTAAGGA GATTCCCTCT
GCAAAAGTTG ATGCCTTGGA ATTAGATCTC AGTTCAATGG ATTCTGTCAA AAAATTTGCA TCTGATTTTA AGTCTTCTGG
TCTTCCGTTG AACATCTTGA TAAACAACGC AGGAATTATG GCATGCCCTT TCAAGCTCTC TGCAGACAAA ATTGAACTAC
AGTTTGCCAC AAATCACATT GGTCACTTTT TATTGACAAA TCTTTTGTTG GACACTATGA AGAAAACTTC ACGTGAAACT
AAGAAAGAAG GAAGAATTGT TAATGTCTCT TCTGAGGCTC ACCGGTTTGC ATATTCTGAA GGAATCCGTT TTGACAAAAT
TAATGATAAG TCAAGTTACA GAGCCTGGGG TGCATATGGG CAGTCAAAGC TTGCCAACCT TTTACATGCG AATGAACTTT
CAAGGCGTCT CAGGGAAGAT GGGGTGGAGA TTTCTGCAAA TTCTCTTCAT CCTGGAGCAA TTACCACCAA TCTTTTCCGT
CATACTCCAA TAAACGGTAT AATTAATGTT ATTGGTAGAC TCGTTTTTAA AAACGTCCCG CAGGGAGCAG CAACAACATG
CTATGTAGCA TTACACCCAC AAGTGAAGGG AGTTAGTGGC AAGTATTTTT CAGACAGTAA TGTTGCCCAA CCAACCTCAC
TTGGGACTGA TGCTGATTTG GCCAAGAAAC TTTGGGATTT CAGCTTGAAA TTGACCAAGT AAAAAACCCA GGTATTATTT
GTCAATGGAG ATAGCAGCTT CAATTATACG ACTTAATGTA ATTTCTATCA AAATTCTCAT CACCTGTTGC ATAGGCATGA
ATTTTAAAGT TCCTACTCCA TTTTACTTGG CACAGAATTT ATACCAGTTT GTATAAGAAT AAAACTTTCT GCACTATTAT
TTTCTCTTGG ATGAGTACCT GGTAATGTAT GGAAGTAGTA GTATTACCAA ATGTTAGTTT CTTGTTCAAT GGTCACTCTC
AAGTTCTATT CTCTTTTAGG TCTATTGAAG TTTTGCTTAG ATTTTTTAGG GAAATGTACT AACTTCCTTA TAATGTTCTT
CACCTTTTAC TGTATTTGGG TTAGTTTAAT CTGAGATGAA AC

>Vigan.08G082000.01
ATGTGGCCAT TCAGCAAGAA AGGGGCTTCT GGGTTTTCAT CATCATCCAC TGCTGAGCAA GTCACTGAAG GTCTTGATGG
AACTGGTCTC ACTGCCATTG TTACAGGAGC ATCCAGTGGT ATTGGCACTG AGACTACACG TGTACTTGCT TTGCGAGGTG
TCCATGTGAT CATGGGTGCG AGAAATATGG TTGCTGCTAA AGATGTCAAA GAAACAATAC TTAAGGAGAT TCCCTCTGCA
AAAGTTGATG CCTTGGAATT AGATCTCAGT TCAATGGATT CTGTCAAAAA ATTTGCATCT GATTTTAAGT CTTCTGGTCT
TCCGTTGAAC ATCTTGATAA ACAACGCAGG AATTATGGCA TGCCCTTTCA AGCTCTCTGC AGACAAAATT GAACTACAGT
TTGCCACAAA TCACATTGGT CACTTTTTAT TGACAAATCT TTTGTTGGAC ACTATGAAGA AAACTTCACG TGAAACTAAG
AAAGAAGGAA GAATTGTTAA TGTCTCTTCT GAGGCTCACC GGTTTGCATA TTCTGAAGGA ATCCGTTTTG ACAAAATTAA
TGATAAGTCA AGTTACAGAG CCTGGGGTGC ATATGGGCAG TCAAAGCTTG CCAACCTTTT ACATGCGAAT GAACTTTCAA
GGCGTCTCAG GGAAGATGGG GTGGAGATTT CTGCAAATTC TCTTCATCCT GGAGCAATTA CCACCAATCT TTTCCGTCAT
ACTCCAATAA ACGGTATAAT TAATGTTATT GGTAGACTCG TTTTTAAAAA CGTCCCGCAG GGAGCAGCAA CAACATGCTA
TGTAGCATTA CACCCACAAG TGAAGGGAGT TAGTGGCAAG TATTTTTCAG ACAGTAATGT TGCCCAACCA ACCTCACTTG
GGACTGATGC TGATTTGGCC AAGAAACTTT GGGATTTCAG CTTGAAATTG ACCAAGTAA

>Vigan.08G082000.01
MWPFSKKGAS GFSSSSTAEQ VTEGLDGTGL TAIVTGASSG IGTETTRVLA LRGVHVIMGA RNMVAAKDVK ETILKEIPSA
KVDALELDLS SMDSVKKFAS DFKSSGLPLN ILINNAGIMA CPFKLSADKI ELQFATNHIG HFLLTNLLLD TMKKTSRETK
KEGRIVNVSS EAHRFAYSEG IRFDKINDKS SYRAWGAYGQ SKLANLLHAN ELSRRLREDG VEISANSLHP GAITTNLFRH
TPINGIINVI GRLVFKNVPQ GAATTCYVAL HPQVKGVSGK YFSDSNVAQP TSLGTDADLA KKLWDFSLKL TK*