GBrowse Details

Vigan.08G078000.01

Basic Information:
Name: Vigan.08G078000.01
Multiple alignment
Variant Information
Position: Chr08:6325143..6328369 (- strand)
Length: 3227
Functional Information:
Description: Similar to Uncharacterized protein. [I1NGT0, Glycine max]
InterPro: Remorin, C-terminal (IPR005516)
Remorin, N-terminal (IPR005518)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.93,17.87,0.58,2.65,1.47,10.64
Arabidopsis thaliana homolog: AT3G61260.1
Automatic updates:
Name: NM_001249350 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max remorin family protein (LOC100305501), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:6325143..6325468 (- strand)
Length: 326
Type: three_prime_UTR
Position: Chr08:6325469..6325666 (- strand)
Length: 198
Type: CDS
Position: Chr08:6326306..6326387 (- strand)
Length: 82
Type: CDS
Position: Chr08:6326648..6326735 (- strand)
Length: 88
Type: CDS
Position: Chr08:6326824..6326874 (- strand)
Length: 51
Type: CDS
Position: Chr08:6327945..6328119 (- strand)
Length: 175
Type: CDS
Position: Chr08:6328120..6328369 (- strand)
Length: 250
Type: five_prime_UTR

>Vigan.08G078000.01 class=Sequence position=Chr08:6325143..6328369 (- strand)
TGTCTCTGTT GGTGTGCTGT GCCAACTCAT AGGAGGCCAC TTGTACCTAC CACTGTTAGC CACACAGCTA AGATTTTAGA
ATTTGAGTTA AGTTACCTTC CTTCAACCAT AATATCCCAA CTAACTCTTT CCTCTTCCTC AATTCCTCTA CATATATTTG
CATCATACTA TTTTTAACAC TCCCAAACAA CTCACACCTT TTTTCTCATC ACTTTCTGCA GACAAATCTG AGTCACCACT
GTCAGAAAAA ATGACTGAGG AGCAATCCAA AACTGTGTCT GAGAATACTC CTATTACTAC CTCTCACACT CCACCTGAAC
CTGTTGCTCA TGACCCTCCA AAGGAGGATG TGGCTCAGGA GAAATCTGTT ATTCCACAAC CCTCTCCTTT TGCTGATGAC
TCCAAAGCTC TTTTACTTGT TGAGAGTATG ATAATCTTAT ATAACTCTAC CTTTGCTTTT CTGTTATCAT TAAGTTAATA
TCTGCTACCA AAAGGGTGGT CAGATATCAT TGTGTTTAAA TCATTGCTTT TGTTTTATGC TTTTAATCTC ATTTTGGAGT
TATATGATGA TTTTAATATA AAGTGAAATG TTTCTACCTA CCTATCTACC TACTTGTGTG TAATTCGGAC AGTTCAGATA
ATTAAAGTTT AAAGTTTCTG CATCTTTGTT CATGTTTGTT TTTCTGTCTT TTGCTATGAT TTTTAACGTC TCATGTCTGT
AGCAACTTCA TTTTTTTCAT TTGGGATACG TTAGACAGCT TCCTATTCCT GTGTAAAAGT ATTCCAATTG GAAGAAGTTT
TTTTTTTTCA TTTTCATTCC TTTTATTATA TACGTGACTT GTACTATGGA GTTTCCCAGA AGTGTTTTTA CAAATATAAA
TGGAAAATGT CAAAACTCTC TGGTTAAGTT AAGCTTTCTG TGAGGCTTTT TTTTCAAAAT ACTTTTACTT TTTAGTTTTT
CTTTAATTTT TTATTATCAG TTTTCCTCTG CTGGAATTTC CCTGTCGTAG GTCTATTGGA AAGAGTTATA TGCCCAAACC
AAATTGATGG GTTACCAACT GAATGATAAT ATGATTCTTT CCGTCAAGTA AAGATCTATT TTTTCTTACT TGAGCTCATA
ACATGTGGAA ACTCAAAGGA AGAAACATCT TCACCTGGTC TTGTAATTCA TACAGTATTA CTCTATTCAC TATTTTAAGA
TCTCCCATGT TGATTATTTT TTTCTTAGCC ATAATCTCTT TACAACTTCT TGTAGCCTTG GATTCCAAAG TATACACTTT
GCATGCTGTA TACTCAACTT TTTGTTCAAT CATATCATAA AAATTCACCT TCTTGTGTCT TTAGTTCACC ACAATATATA
TATATATATA TATATATATA TATATATATA GAAACACACA CATTTATATA TTTCTATTTA ATGATCATTA TAATTGCTGT
AAAGGCTCAA ACAATAATAA TTATTACGTT GTGTTGTTAA TTTGGTTTTT GTCAGAGACT AGTGAAGTTG TTGTAGAGAA
ACCAATTGAG GGATCTGTGA ACCGAGGTGA GTTTGTTTGC ATCGTGATAC TTTATTTCTC GTTATGCATT TCATATTTAC
ATCCGAATTC CTACGACTTC TCTTTCTTCT TCAGATGCTG TCCTTGCGAG AGTTGCAACA GAGAAGAGGT TGTCACTGAT
CAAAGCATGG GAAGAAAGTG AAAAGTCAAA AGCTGAGAAC AAGTAAGAAC TTGCATAAAA TATTGTTAAT TTCCTTATTC
AGCTCAAATA GAAACTGTAG TATGACCTTT GGCTGTTTTT GGTACTGCAC TTGGCATTAG AAAACAGTAC GATAGTTGTG
AAGTTTAAAA AAGATCTGTG AATATGGAGT TCTAATTATT TGTTTTGCCA AACTAGGTTG TTAGTTAACA CCAAATGTTC
GTATTATTTG ATCATGTAAT TCTTTGAAGT CATTAACTAA TTCATATGAA TTTGATGAGC AGGGCTTACA AAAACATTTC
ATCAATTTCA GCATGGGAGA ACAGTAAGAA AGCTGCAACG GAGGCTGAAT TGAGAAAGAT TGAAGTAAGA GCTTGTTTTA
TTATTAGTAT TAAGAAATTA TTCGTAGTAA TTGTAACTTG TTCTGTAGGT ACTTTCTGAA ATTGCGTCCA TACCATTTTT
CCAGTAGGAA CTGGTTTTAA ACGTTTTTTT GTTTATCTTC TGAATTGAAA TGATCAAGGA GCAAGCAAGC TTCCACCACC
CACCCTCTCA GAAACTGAGA GAATAAGGGT TTGGGATGGA TCTGAGATTA ACCATTTCTT ACAATAGAAA TAGAATAACC
ACAACTAAAA GTATTGTTAT CCTTGTTCTG GAAAGTGATC TTATATTAAT GTTTCAGCCC CCACAAACAT TATTTTTACA
AGAAGGCAAT AAGAATTTCT GTTACAAATA ATGTTTATTC TGAGGTCAAC TTAAAAGGAA TTTAAGTACT TCGTACACAA
CATTGGAAAA TAGAGAGAGA TTAGAAGAAG AAAAAGTGAG GAGTGAATGG AAATGAAGAG AATCAACACT GATAAGAATC
TGGGCGTGAA ATAATTTAGA GTTACACGAA ACTTTAACAT GTCTTGTGAA AAGTAAAATA ACTTTTGCAA TTTACATGAC
ATTGAAGTTG GCAGAGATGG TGAGGAAAAA TTGACATTTG ATTTTCACTG TGTTTGTGAG CAGGAACAAC TGGAGAAGAA
AAAGGCAGAA TATGGAGAGA AGTTGAAAAA CAAAATAGCT ACAATCCACC GAGAAGCTGA AGAAAAGAGG GCATTTATTG
AGGCCAAAAA AGGGGAAGAT TTCTTGAAGG CAGAAGAGAC AGCTGCAAAG TACAGGGCAA CTGGAACAGC CCCAAAGAAA
CTCTTTGGTT GTTTCTATTA AGCCTGCTCA TTTATAAAAA TGTAGTATTA CTATTATTAT TACTATTGCT ATTATTTTCT
ATGATAGTTC ATATCAGTAC ATGTGTGGTT TGGTTGTCTT TTATTGAGTT TTAGTTCATC TTCATTTATT ATTGTGTGCA
CAGAGATATG TTGGTGGTGT GTATACAACA ATTACTGTGT GCATACAAGA AATTGAATTA TTCAATTTGG GTAATACCAA
TTTCTTGTAC CATCATGCCA CTAACCTTTC TCATTCCCTC ACGAGCCCTC CTACCTTATT GGACAATATG ATGGTTGTTG
ATAAAGGTTC AATTTCATGA CCCAAAA

>Vigan.08G078000.01
TGTCTCTGTT GGTGTGCTGT GCCAACTCAT AGGAGGCCAC TTGTACCTAC CACTGTTAGC CACACAGCTA AGATTTTAGA
ATTTGAGTTA AGTTACCTTC CTTCAACCAT AATATCCCAA CTAACTCTTT CCTCTTCCTC AATTCCTCTA CATATATTTG
CATCATACTA TTTTTAACAC TCCCAAACAA CTCACACCTT TTTTCTCATC ACTTTCTGCA GACAAATCTG AGTCACCACT
GTCAGAAAAA ATGACTGAGG AGCAATCCAA AACTGTGTCT GAGAATACTC CTATTACTAC CTCTCACACT CCACCTGAAC
CTGTTGCTCA TGACCCTCCA AAGGAGGATG TGGCTCAGGA GAAATCTGTT ATTCCACAAC CCTCTCCTTT TGCTGATGAC
TCCAAAGCTC TTTTACTTGT TGAGAAGACT AGTGAAGTTG TTGTAGAGAA ACCAATTGAG GGATCTGTGA ACCGAGATGC
TGTCCTTGCG AGAGTTGCAA CAGAGAAGAG GTTGTCACTG ATCAAAGCAT GGGAAGAAAG TGAAAAGTCA AAAGCTGAGA
ACAAGGCTTA CAAAAACATT TCATCAATTT CAGCATGGGA GAACAGTAAG AAAGCTGCAA CGGAGGCTGA ATTGAGAAAG
ATTGAAGAAC AACTGGAGAA GAAAAAGGCA GAATATGGAG AGAAGTTGAA AAACAAAATA GCTACAATCC ACCGAGAAGC
TGAAGAAAAG AGGGCATTTA TTGAGGCCAA AAAAGGGGAA GATTTCTTGA AGGCAGAAGA GACAGCTGCA AAGTACAGGG
CAACTGGAAC AGCCCCAAAG AAACTCTTTG GTTGTTTCTA TTAAGCCTGC TCATTTATAA AAATGTAGTA TTACTATTAT
TATTACTATT GCTATTATTT TCTATGATAG TTCATATCAG TACATGTGTG GTTTGGTTGT CTTTTATTGA GTTTTAGTTC
ATCTTCATTT ATTATTGTGT GCACAGAGAT ATGTTGGTGG TGTGTATACA ACAATTACTG TGTGCATACA AGAAATTGAA
TTATTCAATT TGGGTAATAC CAATTTCTTG TACCATCATG CCACTAACCT TTCTCATTCC CTCACGAGCC CTCCTACCTT
ATTGGACAAT ATGATGGTTG TTGATAAAGG TTCAATTTCA TGACCCAAAA 

>Vigan.08G078000.01
ATGACTGAGG AGCAATCCAA AACTGTGTCT GAGAATACTC CTATTACTAC CTCTCACACT CCACCTGAAC CTGTTGCTCA
TGACCCTCCA AAGGAGGATG TGGCTCAGGA GAAATCTGTT ATTCCACAAC CCTCTCCTTT TGCTGATGAC TCCAAAGCTC
TTTTACTTGT TGAGAAGACT AGTGAAGTTG TTGTAGAGAA ACCAATTGAG GGATCTGTGA ACCGAGATGC TGTCCTTGCG
AGAGTTGCAA CAGAGAAGAG GTTGTCACTG ATCAAAGCAT GGGAAGAAAG TGAAAAGTCA AAAGCTGAGA ACAAGGCTTA
CAAAAACATT TCATCAATTT CAGCATGGGA GAACAGTAAG AAAGCTGCAA CGGAGGCTGA ATTGAGAAAG ATTGAAGAAC
AACTGGAGAA GAAAAAGGCA GAATATGGAG AGAAGTTGAA AAACAAAATA GCTACAATCC ACCGAGAAGC TGAAGAAAAG
AGGGCATTTA TTGAGGCCAA AAAAGGGGAA GATTTCTTGA AGGCAGAAGA GACAGCTGCA AAGTACAGGG CAACTGGAAC
AGCCCCAAAG AAACTCTTTG GTTGTTTCTA TTAA

>Vigan.08G078000.01
MTEEQSKTVS ENTPITTSHT PPEPVAHDPP KEDVAQEKSV IPQPSPFADD SKALLLVEKT SEVVVEKPIE GSVNRDAVLA
RVATEKRLSL IKAWEESEKS KAENKAYKNI SSISAWENSK KAATEAELRK IEEQLEKKKA EYGEKLKNKI ATIHREAEEK
RAFIEAKKGE DFLKAEETAA KYRATGTAPK KLFGCFY*