VIGGS:GBrowse

Vigan.08G063400.01

Basic Information:

Name:	Vigan.08G063400.01 Multiple alignment Variant Information
Position:	Chr08:4926891..4927463 (+ strand)
Length:	573

Functional Information:

Description:	Similar to Uncharacterized protein. [I1GT73, Brachypodium distachyon]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,1.19,3.32,0.00,18.19,14.20,15.96

Automatic updates:

Name:	NM_001364686 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527065 (LOC100527065), mRNA.
PubMed ID:	20075913 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:4926891..4926963 (+ strand)
Length:	73
Type:	CDS

Position:	Chr08:4927321..4927463 (+ strand)
Length:	143
Type:	CDS

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.08G063400.01 class=Sequence position=Chr08:4926891..4927463 (+ strand)
ATGGGGTGGC TGCAATCCCT CCTCTCTCCA CTCAAGAAGT TCTGGCTCCG CTTGAATTCA ACTCAAAAGA AGAGTACGTT
CCACCATCAT CTTTTCTCAA TACCAACATG CTTATTCTTT CTTTTCTGCA TCTACTTTTA ATTAATCCAC CACTGCTTCT
GTCCTGTTTC TTACATTGCT CAAGTACTTT ACACAAACCT TCCATTAACC GATCATCTAA TACACCAATG TTCTCTTTCA
CTTTTTTACC GTTTCATTGG GATTTGAAAT CAAGTAAAGA CAATGCAATT TAATTCATGT TCTGGGAAAC GTGCTTTTTA
CACAAACACA CTATACCTTT TTCTTTGCTA AGGAGTAAGG AGGGCACTGC ATGATTTGAT TCTTTTTTCC CTCTCACTCC
CACATGATCA TTTTTTTTCC AACATTTCAG GAAGAGGGAT TTACATTCTG TATGAAGATG TCAAGTCTTG CCCCTATGAG
GACGTGCACG TCCTCTGGTC AATACTGGTG GAACCGCATT CACCTTCTAT GCCATCCAAA AAAATGAAGC CTTTGGACCC
AAGACAAAAC TGA

[show][hide][copy]TRANSCRIPT

>Vigan.08G063400.01
ATGGGGTGGC TGCAATCCCT CCTCTCTCCA CTCAAGAAGT TCTGGCTCCG CTTGAATTCA ACTCAAAAGA AGAGAAGAGG
GATTTACATT CTGTATGAAG ATGTCAAGTC TTGCCCCTAT GAGGACGTGC ACGTCCTCTG GTCAATACTG GTGGAACCGC
ATTCACCTTC TATGCCATCC AAAAAAATGA AGCCTTTGGA CCCAAGACAA AACTGA

[show][hide][copy]CDS

>Vigan.08G063400.01
ATGGGGTGGC TGCAATCCCT CCTCTCTCCA CTCAAGAAGT TCTGGCTCCG CTTGAATTCA ACTCAAAAGA AGAGAAGAGG
GATTTACATT CTGTATGAAG ATGTCAAGTC TTGCCCCTAT GAGGACGTGC ACGTCCTCTG GTCAATACTG GTGGAACCGC
ATTCACCTTC TATGCCATCC AAAAAAATGA AGCCTTTGGA CCCAAGACAA AACTGA

[show][hide][copy]PROTEIN

>Vigan.08G063400.01
MGWLQSLLSP LKKFWLRLNS TQKKRRGIYI LYEDVKSCPY EDVHVLWSIL VEPHSPSMPS KKMKPLDPRQ N*