GBrowse Details

Vigan.08G051800.01

Basic Information:
Name: Vigan.08G051800.01
Multiple alignment
Variant Information
Position: Chr08:3999316..4000657 (+ strand)
Length: 1342
Functional Information:
Description: Similar to pollen-specific protein SF3-like. [XP_004496871.1, Cicer arietinum]
GO: Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, LIM-type (IPR001781)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,20.27,0.00,0.00,0.00,0.00,0.00
Automatic updates:
Name: NM_001249532 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max LIM-type zinc finger-containing protein (LOC100306027), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3999316..3999421 (+ strand)
Length: 106
Type: five_prime_UTR
Position: Chr08:3999422..3999559 (+ strand)
Length: 138
Type: CDS
Position: Chr08:3999653..3999749 (+ strand)
Length: 97
Type: CDS
Position: Chr08:3999898..3999944 (+ strand)
Length: 47
Type: CDS
Position: Chr08:4000154..4000237 (+ strand)
Length: 84
Type: CDS
Position: Chr08:4000338..4000535 (+ strand)
Length: 198
Type: CDS
Position: Chr08:4000536..4000657 (+ strand)
Length: 122
Type: three_prime_UTR

>Vigan.08G051800.01 class=Sequence position=Chr08:3999316..4000657 (+ strand)
CAAGAAGAGA GAGAAAGGGC AAAGGAAATT CTTGCAGAAG AGTGCAACTC TTCCTCTCTT TCTCTCTTGT TCCTTCTTTA
GCCTTTGGTG ATAGACAGAA GAAGCCATGG CCAGCTTTGG AGGAACCACA CAAAAGTGCA TGGCTTGTGA CAAAACCGTC
TACCTTGTCG ATAAGCTAAC TGCTGATGGC CGTGTCTATC ACAAGGCCTG CTTCAGATGC CACCATTGCC GCAATACCCT
TAAGGTATAT ATCAAGATAT TAATTAATAA ACTCTAGTCT GAAATTTTAT CATCAAATCA TACATTTTTT ACAAGAGTTG
TGTAACTTTG TTTGCAGCTG AGCAACTACT GTTCTTTTGA GGGGGTGCTA TATTGCAGAC CTCATTATGA TCAACTTTAC
AAGCGAACTG GCAGCTTGGA CAAAAGCTTC GAAGGTTAAA CTTACTTCAA AAAACATATG AAATTATTTA GAATAACCCA
GGGCATCTTT TATTCCTTTC TCACTTTCTT TCAAAATATA TAACTTCATT ACTCAGAATC AAATTTTCAC TGCTTTTGTT
GCATCTTGTT CTCATATCAC AGGAACACCC AAAGTTCAGA AACCAGAGAA ACCGATAACT GAAAATGAGG TGATTTCCCT
GTAGCTTTTC TTGCCATATA TTCAGTAAAC TCCATTTAGA ATTCTAGTTT TCTTTTTTTT ATTATTATTA TTCATTATAT
ACAATAGTTG AATCCGTATA AAGCTTGAAC GGGTTTGTTT CATTTGTCAT GCAAAGTTGC AATTGCCATT TTCATTGATT
TCAGTACTAA TCTAAATGTA ACGGAATAAT TTTGGCAGAA CTCCAAGGGC ATCGCAAACG TGTTCTTGGG TACCAGAGAC
AAATGTGTGT GCTGCAAAAA GACAGTGTAT CCCACTGAGA GGGTAATTCC AGAAAAATAT TATAGAACTT CTTCAATTCA
GTTCATTTAT TACTGATACT GATATATGTA TATAAATGTA TGATTGTTTA TATATGTTAA AGGTAACCAT TAATGGGACA
CCCTACCATA AAAGCTGCTT CAAATGTACC TATGGAGGTT GCACTATAAG CTCATCAAAC TTCATCACAC ACGAGGGAAA
GCTGTACTGC AAACACCATC ACATTCAACT ATTCAAAGAG AAGGGTAATT ACAGTCAGCT TGAGAATGAC CAAGTTGCTA
CCACGGAAGT CGTTGCTTGA TGTGAACTGA CATAGAATGC TAGCAGTTGT TTTGATCCGT AATGCTTGTA AACAATATCT
GTATTCATGA GACAGAAAGT TGGTATATAT GGCATCTTCA TCGTTCAGAA TACTTTTCAC AA

>Vigan.08G051800.01
CAAGAAGAGA GAGAAAGGGC AAAGGAAATT CTTGCAGAAG AGTGCAACTC TTCCTCTCTT TCTCTCTTGT TCCTTCTTTA
GCCTTTGGTG ATAGACAGAA GAAGCCATGG CCAGCTTTGG AGGAACCACA CAAAAGTGCA TGGCTTGTGA CAAAACCGTC
TACCTTGTCG ATAAGCTAAC TGCTGATGGC CGTGTCTATC ACAAGGCCTG CTTCAGATGC CACCATTGCC GCAATACCCT
TAAGCTGAGC AACTACTGTT CTTTTGAGGG GGTGCTATAT TGCAGACCTC ATTATGATCA ACTTTACAAG CGAACTGGCA
GCTTGGACAA AAGCTTCGAA GGAACACCCA AAGTTCAGAA ACCAGAGAAA CCGATAACTG AAAATGAGAA CTCCAAGGGC
ATCGCAAACG TGTTCTTGGG TACCAGAGAC AAATGTGTGT GCTGCAAAAA GACAGTGTAT CCCACTGAGA GGGTAACCAT
TAATGGGACA CCCTACCATA AAAGCTGCTT CAAATGTACC TATGGAGGTT GCACTATAAG CTCATCAAAC TTCATCACAC
ACGAGGGAAA GCTGTACTGC AAACACCATC ACATTCAACT ATTCAAAGAG AAGGGTAATT ACAGTCAGCT TGAGAATGAC
CAAGTTGCTA CCACGGAAGT CGTTGCTTGA TGTGAACTGA CATAGAATGC TAGCAGTTGT TTTGATCCGT AATGCTTGTA
AACAATATCT GTATTCATGA GACAGAAAGT TGGTATATAT GGCATCTTCA TCGTTCAGAA TACTTTTCAC AA

>Vigan.08G051800.01
ATGGCCAGCT TTGGAGGAAC CACACAAAAG TGCATGGCTT GTGACAAAAC CGTCTACCTT GTCGATAAGC TAACTGCTGA
TGGCCGTGTC TATCACAAGG CCTGCTTCAG ATGCCACCAT TGCCGCAATA CCCTTAAGCT GAGCAACTAC TGTTCTTTTG
AGGGGGTGCT ATATTGCAGA CCTCATTATG ATCAACTTTA CAAGCGAACT GGCAGCTTGG ACAAAAGCTT CGAAGGAACA
CCCAAAGTTC AGAAACCAGA GAAACCGATA ACTGAAAATG AGAACTCCAA GGGCATCGCA AACGTGTTCT TGGGTACCAG
AGACAAATGT GTGTGCTGCA AAAAGACAGT GTATCCCACT GAGAGGGTAA CCATTAATGG GACACCCTAC CATAAAAGCT
GCTTCAAATG TACCTATGGA GGTTGCACTA TAAGCTCATC AAACTTCATC ACACACGAGG GAAAGCTGTA CTGCAAACAC
CATCACATTC AACTATTCAA AGAGAAGGGT AATTACAGTC AGCTTGAGAA TGACCAAGTT GCTACCACGG AAGTCGTTGC
TTGA

>Vigan.08G051800.01
MASFGGTTQK CMACDKTVYL VDKLTADGRV YHKACFRCHH CRNTLKLSNY CSFEGVLYCR PHYDQLYKRT GSLDKSFEGT
PKVQKPEKPI TENENSKGIA NVFLGTRDKC VCCKKTVYPT ERVTINGTPY HKSCFKCTYG GCTISSSNFI THEGKLYCKH
HHIQLFKEKG NYSQLENDQV ATTEVVA*