GBrowse Details

Vigan.08G050400.01

Basic Information:
Name: Vigan.08G050400.01
Multiple alignment
Variant Information
Position: Chr08:3905023..3909880 (+ strand)
Length: 4858
Functional Information:
Description: Similar to Zinc finger protein-like protein. [G7IET7, Medicago truncatula]
InterPro: Zinc finger, RING/FYVE/PHD-type (IPR013083)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:23.02,17.57,22.52,20.68,28.68,20.26,22.91,27.58
Arabidopsis thaliana homolog: AT2G14835.1
Automatic updates:
Name: NM_001253248 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max zinc finger protein-like 1-like (LOC100805734), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255820 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100775639 (LOC100775639), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3905023..3905284 (+ strand)
Length: 262
Type: five_prime_UTR
Position: Chr08:3905285..3905308 (+ strand)
Length: 24
Type: CDS
Position: Chr08:3905708..3905788 (+ strand)
Length: 81
Type: CDS
Position: Chr08:3906087..3906207 (+ strand)
Length: 121
Type: CDS
Position: Chr08:3906295..3906389 (+ strand)
Length: 95
Type: CDS
Position: Chr08:3907071..3907142 (+ strand)
Length: 72
Type: CDS
Position: Chr08:3907843..3908085 (+ strand)
Length: 243
Type: CDS
Position: Chr08:3908258..3908366 (+ strand)
Length: 109
Type: CDS
Position: Chr08:3908489..3908675 (+ strand)
Length: 187
Type: CDS
Position: Chr08:3909051..3909132 (+ strand)
Length: 82
Type: CDS
Position: Chr08:3909133..3909880 (+ strand)
Length: 748
Type: three_prime_UTR

>Vigan.08G050400.01 class=Sequence position=Chr08:3905023..3909880 (+ strand)
AAAAAATGTG AAGGAAAAGA AAAACTCAAA CGGATCTGAA TTGCAAACGT AGGAGGGGGT TTTGTTTCGG AGTGAACTGA
GCCTATATCA ACACAAACAA CATTTTCAGT GAATCAACAC GAGAAAAAGA GAGAAAAAGA TTATTGTCTA CGTGATTTCG
ATTATTTGAT CATGCTCTTC GCTTCAATTC CCCTTTCTAA ATCCTCTTGA TTTTCTTTTT CCGAATAACG TCAGATTCGA
TTGAATTATA CCCCTCAATG CAATGGTGGT CTGCAAATGT CGCAAGGTTC CGTTCGTTTT CTCTTTCTTT GCATACAGTT
CGGCTCCTTT TTCTTTCTCT TTCCAAAACC CTGATTTGTG TTTTCCCAAT CACGATTGAT TTGTTTGCTG GGTGTGTAGA
TCCGATTGGT ATTGTCTATT CAGATCAATC GCGGGTGATC TACGTGCTCT TGCATTTTTG CGTGATTTGA TTTTTATTTT
CATTTGAATA TGCATTTAGG TGATGGAAAC AGGTGTGCTT TCACTTGAGC ATAAAATTGA TACAAGTGAT TTGTCTTTAC
TTGTTGTTGT TGTTGCATGT GATTCTCGTT TCTTGATTAT CTTGGGGAGC TATGCTAGTT GTTTCCCATT TTCTTTCTTT
GAATTAGAGC TAATGCTGTG TTGTGCGTTC TGTATGATGT TTTAGGCTAC TAAATTATAC TGCTTCGTGC ACAAAGTTCC
TGTCTGCGGG GAATGTATCT GCTTCCCGGA GCACCAAATC TGCGTGGTAA TTTATTTTTC TGCAATTCGT ATCTTTTATT
ATAATTCACT CTCAATATAT GCTATATAGC CTTTGATCTC TAGTTCTTTC CTTTTTCATT TCCTCCTCTT GTTTTTGCTG
ATTTTTGTTT TTCATTCAAT ATATTATTTT TGGTCATTTG TTTCCTGGTC CAAGACTTCA GTTTTTTCTT GTTTTAGACT
GAGTATTACT GGGGATATTG CAGTTTTGTG ATTTGTCCAC ATATTTATGT TTGAAGCTGC AGAGTTTCCG GGGTTAAGCT
TCGTCTACTT TGTAAATTTT GCAGGTTCGA ACTTATTCGG AATGGGTTAT AGATGGGGAG TATGATTGGC CTCCTAAATG
CTGCCAATGT CAGGCTGTTT TAGAAGAGGG GGATGCATCT CAAACTACTC GACTGGGCTG CTTGCGTATG TGGTTTTTCT
TATGTTTTCC TTCCAAATAA TTTTTGGCTG GGCTTGCATT GTCACATTTA TAAATTTAAA TTTTGTACAT AGATGTTATC
CACACAAACT GCTTCGTCTC GCATATCAAG AGTTTTCCTC CCCATACTGC CCCAGCAGGA TATGCGTGTC CTTCATGTTC
TACTTCTGTA AGATCTACTG ATCTACCTTC AAGCGGTTCC TGTCTTCTTT TATAAAAAAC TACTGATTGA AATTCATTTT
TTAATTTACA TGTTTTAACT GAAAGCTAGT ATGAGGTTTC TGTCTGGTTT TGTTCAAACT TCAAAATATG GTTTACAGTG
TTCTTTTCCT TGAGCATTAT GCAGAAACAG AGAGAGAAAA ACATCCTACT CTTATGTTTT CCTCCCCTCC CTTTGTTACT
TTTCAAATTC ATAATCCTTG AGAGATTGGA CAGAAGCACT AGAAAGGCAA TTGGTGTTTT AGGTGCCCAG AACTGTGTTT
TTCAATTGTT ATTTTTTTCT CTCCCCATTT TATTTATTAT TTCTTTTATT TTATTTTCTT AATTATGAGT TGTAGATAGA
AACTCCAGAA AGCTAACCAT TAATTAGTTT TTCTTTCAAA ACCACTACAT AGTGGCTTGT CTTAGGAGGG ACCCTAGTCA
CGGAAGTAGT TTCTTAGCAG GTAGAGTTAT AGTATGTTTT GGAAATAGAC ACTCTATTAA GAATTAGCTA CATAAAATGT
AACTTGGTAA ACTACTATGG TGATCATGTC TTTGCATTTA CCTTTTAAAA CTAACTTTAA ACAGTAGTAT AGTAAAATTT
TCCATAATTT TTTTTTTCCA TATGTTGTTT GATGAAATAA CTGTACAGAT ATGGCCTCCC AAAAGTGTGA AAGATTCGGG
GTCACGTCTA CATTCCAAGT TGAAGGAAGC TATCATGCAG GTGATTTATG AAGTTGATAA TATATGGGTG ATTTATGAAG
TTGATAGTAT ATGATTGTCT CACTTTTTAT TGGTTTGAGA TATATTGGGG GTATATTTCT TCATATACAG AAATATAGAA
CAAGCTTGTT GCCATAAACA TTGCCACATT TACGAATTAT GAATGAGTTG GGACTTAACA ATGATATTCA TATTATGTTT
AAGAAAGTCC CTGTTGTTCC TGGTCTTTGT CAGACTTCAC TCTTTGATGA GTACAATGAA ATACTATTAT ATGGAATGAC
AACATTCTTT GATGCTAAGA CCTATTGAAC TTATCACGCA ATCAGAAGAA TCTATTTACT AGCAAATGCT CGTACTAGGC
GTATACTTTA ATATAATTAG TTTCTGTTTC ATTTCCATCT AATTTTCGTT CAGCTTCTTC GGGGGTCACT ATGGAAGCGA
TGATGTTTAG GATTATGAAA TTCAGTCAAG GCATCGGGTC TGATTCTTTG TTAGAGGCAC AGTACTGAAT GTTAGTGCTG
TACCTCTGAT CAATAATCGT GGTTGTGAAT TGTTGATTAT TGCTGCAGAA AAAGTTACCA TTTCCAAAAA TCATATAAAT
CCACACTTCC TTTCTTTCTT TTGTCTTGAT GATTTTCCTT GTCTGTTTTC TCCTCGTTAT ACAAATAAAA TTTTCATTAG
TTTTTATCTG TTTTTGTCAG TCTGGCATGG AAAAGAATGT TTTTGGAAAT CATCCAGTTT CGATGACAGA ATCGCGAAGT
CCTCCGCCTG CTTTTTCTTC AGATCCATTG GTTAGTAGGG AAAATCATGG AAACTCAGAC CACGTCGATG GATTCTCACC
AGCAACTGGG TCAGAACTAC CTAAACTTAC AGTGGCTGAT GTTATGGAGA TAGATGGTGC TAATTCAGTG GGAAATTTCA
TGAAAGCCTC AAGTCCTGGT GCTGTAAGAG GATATTTTCA TTGCACTTTT ATTGTGTTTG CATTTATCTA TCCTCTTAAA
ACTCTTAATA AGGAGGCTGA CTTTTCTCTT GTTTTTATGC AACGCGTGTT GTATCTTGTT TCTTGTATTT GATATTTTTT
CTAATATAGT TTTGTTCTTA CCGCAAATAA TTTAGCCTGG TGCCACCACA AGGAAGGGCT CAGTCCATGT TGAACGACAG
AATTCTGAAA TTTCTTACTA TGCTGACGAT GAAGACGGGA ATAGGAAAAA GTACTCAAAA CGAGGTGATA TGGTCTTTTT
GAATGATATT TAATATTTTA AAATTTTTTT GACTAAAACT TGACATGTCT CCTCTCTCCT CTGTTGTTAT AGCTTGCTAA
TTTGAATTTC GTCTTTGCAA GCGTAGGTCC ATTCCACCAT AAGTTTCTTA GAGCTTTGCT TCCTTTCTGG TCTACTTCCT
TACCTACTCT ACCAGTGACT GCGCCTCCAA GGAAAGATGC AACAAATACA GCTGAAACCT CAGAAGGCCG TACACGGCAT
CAAAGATCAT CGAGGATGGA CCCAAGAAAA ATTCTTCTTC TGATTGCAAT TATGTATAGC TCTTCACTTC ATATTAATAT
ATAATAATCC AAAGTAGGAA GTACAGTAAC AGTAAAAGAT TAAAAGTCTG GGATCTAAAA TTTGGGCGGT TGAAGTTATG
TTTGAGTCAC TCATGAGTAA CGAGGCGTGT TTTGTTTAGG GCAAGTGGGA ACAACTGGGT TTCTGAGCTT GGGCCGTTAC
TGCAACAAGT AGTATGTGTC CCAGGGTTAA AATGCTTGCG GTCTCTATTA AATTTATCTG GCATAAATCT TTCGCAATGC
TGATGCTCTA ATTCTTCTAC TATGTTTATA ACAACTATAC GCAGTATCAG TTGTGGTATG TACTGCTAGT TTTAAATTGA
TGAAGTTATT ATGATGATCC ATTTGCAGGG CTTGCATGGC AACTATGGGT ATATTGTATT ACAGACTGGT GCAACGGGGT
CCAGGGGATG AGCTTCCTAA TGAGGAATAA ATTTGCAATG GAGCTCTTAA AATCCGGACA CGCTCGCTGG CTCCCATTTT
GGATATTGCT GGTTTCTTGT TGCTTCTGCT GCTTCTTATC TGTTTGGCTT CTTTATTTGG ACCAGTCGCT GTTTTGGCCA
ACATACAAGT AGTTTGTTGA TAATTTTTCA TCTGAATGCC GATGACAGTG ACTTGATGCA TAAATTCTTA GTCAGCCATC
TTTGCTCTTT GCCCTCAGTT TTGGTACCCT CTTGGAATGT AATTGCAGAT TTAAATATTG CAATCTTAAT TGGATTAAGT
TGTATCCATC ATTTCAAATG CACATTGTTA GTCAGTCAAC ATTTTTATCT GTAGTTTTTA TACAAAAACT CATACAATGT
TGTTATGCAT TATATATTTT CATAGACCTG TGATATGAAA ATATGGCCAT CTGCATCTGC ACTGATGATA CCGCATGTTT
GTGACCTTTA TCTTTTGATT TGGCTGAGTG TAGGACGTTG AGTAGTATTT CTGTTCCATC GGAAAATTGA GAAGGAATGC
TCTAGAACTC CGCAGCTGAA ACCATATTTA GGTTGGACGA TTCGTTCGGG CCTACAAATC ATAGGCAACA ACGACATAAA
TACAACCAAG AATGCCATGA AGTCAGCATT TGGGGGGGCA CTCATACATG CTCTCGCTTA TAATCTAGAC TAGACCTTTA
CGCATTTGGT TGAGAGGAAA GAAATTAAGC AGCCAAAGTA TATTTTTTAA ATTGCGGG

>Vigan.08G050400.01
AAAAAATGTG AAGGAAAAGA AAAACTCAAA CGGATCTGAA TTGCAAACGT AGGAGGGGGT TTTGTTTCGG AGTGAACTGA
GCCTATATCA ACACAAACAA CATTTTCAGT GAATCAACAC GAGAAAAAGA GAGAAAAAGA TTATTGTCTA CGTGATTTCG
ATTATTTGAT CATGCTCTTC GCTTCAATTC CCCTTTCTAA ATCCTCTTGA TTTTCTTTTT CCGAATAACG TCAGATTCGA
TTGAATTATA CCCCTCAATG CAATGGTGGT CTGCAAATGT CGCAAGGCTA CTAAATTATA CTGCTTCGTG CACAAAGTTC
CTGTCTGCGG GGAATGTATC TGCTTCCCGG AGCACCAAAT CTGCGTGGTT CGAACTTATT CGGAATGGGT TATAGATGGG
GAGTATGATT GGCCTCCTAA ATGCTGCCAA TGTCAGGCTG TTTTAGAAGA GGGGGATGCA TCTCAAACTA CTCGACTGGG
CTGCTTGCAT GTTATCCACA CAAACTGCTT CGTCTCGCAT ATCAAGAGTT TTCCTCCCCA TACTGCCCCA GCAGGATATG
CGTGTCCTTC ATGTTCTACT TCTATATGGC CTCCCAAAAG TGTGAAAGAT TCGGGGTCAC GTCTACATTC CAAGTTGAAG
GAAGCTATCA TGCAGTCTGG CATGGAAAAG AATGTTTTTG GAAATCATCC AGTTTCGATG ACAGAATCGC GAAGTCCTCC
GCCTGCTTTT TCTTCAGATC CATTGGTTAG TAGGGAAAAT CATGGAAACT CAGACCACGT CGATGGATTC TCACCAGCAA
CTGGGTCAGA ACTACCTAAA CTTACAGTGG CTGATGTTAT GGAGATAGAT GGTGCTAATT CAGTGGGAAA TTTCATGAAA
GCCTCAAGTC CTGGTGCTCC TGGTGCCACC ACAAGGAAGG GCTCAGTCCA TGTTGAACGA CAGAATTCTG AAATTTCTTA
CTATGCTGAC GATGAAGACG GGAATAGGAA AAAGTACTCA AAACGAGGTC CATTCCACCA TAAGTTTCTT AGAGCTTTGC
TTCCTTTCTG GTCTACTTCC TTACCTACTC TACCAGTGAC TGCGCCTCCA AGGAAAGATG CAACAAATAC AGCTGAAACC
TCAGAAGGCC GTACACGGCA TCAAAGATCA TCGAGGATGG ACCCAAGAAA AATTCTTCTT CTGATTGCAA TTATGGCTTG
CATGGCAACT ATGGGTATAT TGTATTACAG ACTGGTGCAA CGGGGTCCAG GGGATGAGCT TCCTAATGAG GAATAAATTT
GCAATGGAGC TCTTAAAATC CGGACACGCT CGCTGGCTCC CATTTTGGAT ATTGCTGGTT TCTTGTTGCT TCTGCTGCTT
CTTATCTGTT TGGCTTCTTT ATTTGGACCA GTCGCTGTTT TGGCCAACAT ACAAGTAGTT TGTTGATAAT TTTTCATCTG
AATGCCGATG ACAGTGACTT GATGCATAAA TTCTTAGTCA GCCATCTTTG CTCTTTGCCC TCAGTTTTGG TACCCTCTTG
GAATGTAATT GCAGATTTAA ATATTGCAAT CTTAATTGGA TTAAGTTGTA TCCATCATTT CAAATGCACA TTGTTAGTCA
GTCAACATTT TTATCTGTAG TTTTTATACA AAAACTCATA CAATGTTGTT ATGCATTATA TATTTTCATA GACCTGTGAT
ATGAAAATAT GGCCATCTGC ATCTGCACTG ATGATACCGC ATGTTTGTGA CCTTTATCTT TTGATTTGGC TGAGTGTAGG
ACGTTGAGTA GTATTTCTGT TCCATCGGAA AATTGAGAAG GAATGCTCTA GAACTCCGCA GCTGAAACCA TATTTAGGTT
GGACGATTCG TTCGGGCCTA CAAATCATAG GCAACAACGA CATAAATACA ACCAAGAATG CCATGAAGTC AGCATTTGGG
GGGGCACTCA TACATGCTCT CGCTTATAAT CTAGACTAGA CCTTTACGCA TTTGGTTGAG AGGAAAGAAA TTAAGCAGCC
AAAGTATATT TTTTAAATTG CGGG

>Vigan.08G050400.01
ATGGTGGTCT GCAAATGTCG CAAGGCTACT AAATTATACT GCTTCGTGCA CAAAGTTCCT GTCTGCGGGG AATGTATCTG
CTTCCCGGAG CACCAAATCT GCGTGGTTCG AACTTATTCG GAATGGGTTA TAGATGGGGA GTATGATTGG CCTCCTAAAT
GCTGCCAATG TCAGGCTGTT TTAGAAGAGG GGGATGCATC TCAAACTACT CGACTGGGCT GCTTGCATGT TATCCACACA
AACTGCTTCG TCTCGCATAT CAAGAGTTTT CCTCCCCATA CTGCCCCAGC AGGATATGCG TGTCCTTCAT GTTCTACTTC
TATATGGCCT CCCAAAAGTG TGAAAGATTC GGGGTCACGT CTACATTCCA AGTTGAAGGA AGCTATCATG CAGTCTGGCA
TGGAAAAGAA TGTTTTTGGA AATCATCCAG TTTCGATGAC AGAATCGCGA AGTCCTCCGC CTGCTTTTTC TTCAGATCCA
TTGGTTAGTA GGGAAAATCA TGGAAACTCA GACCACGTCG ATGGATTCTC ACCAGCAACT GGGTCAGAAC TACCTAAACT
TACAGTGGCT GATGTTATGG AGATAGATGG TGCTAATTCA GTGGGAAATT TCATGAAAGC CTCAAGTCCT GGTGCTCCTG
GTGCCACCAC AAGGAAGGGC TCAGTCCATG TTGAACGACA GAATTCTGAA ATTTCTTACT ATGCTGACGA TGAAGACGGG
AATAGGAAAA AGTACTCAAA ACGAGGTCCA TTCCACCATA AGTTTCTTAG AGCTTTGCTT CCTTTCTGGT CTACTTCCTT
ACCTACTCTA CCAGTGACTG CGCCTCCAAG GAAAGATGCA ACAAATACAG CTGAAACCTC AGAAGGCCGT ACACGGCATC
AAAGATCATC GAGGATGGAC CCAAGAAAAA TTCTTCTTCT GATTGCAATT ATGGCTTGCA TGGCAACTAT GGGTATATTG
TATTACAGAC TGGTGCAACG GGGTCCAGGG GATGAGCTTC CTAATGAGGA ATAA

>Vigan.08G050400.01
MVVCKCRKAT KLYCFVHKVP VCGECICFPE HQICVVRTYS EWVIDGEYDW PPKCCQCQAV LEEGDASQTT RLGCLHVIHT
NCFVSHIKSF PPHTAPAGYA CPSCSTSIWP PKSVKDSGSR LHSKLKEAIM QSGMEKNVFG NHPVSMTESR SPPPAFSSDP
LVSRENHGNS DHVDGFSPAT GSELPKLTVA DVMEIDGANS VGNFMKASSP GAPGATTRKG SVHVERQNSE ISYYADDEDG
NRKKYSKRGP FHHKFLRALL PFWSTSLPTL PVTAPPRKDA TNTAETSEGR TRHQRSSRMD PRKILLLIAI MACMATMGIL
YYRLVQRGPG DELPNEE*