GBrowse Details

Vigan.08G048800.01

Basic Information:
Name: Vigan.08G048800.01
Multiple alignment
Variant Information
Position: Chr08:3822275..3825078 (+ strand)
Length: 2804
Functional Information:
Description: Similar to Uncharacterized protein. [C6ZS01, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Leucine-rich repeat (IPR001611)
Leucine-rich repeat-containing N-terminal, type 2 (IPR013210)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.90,1.32,40.80,40.58,30.59,38.60,57.29,39.13
Automatic updates:
Name: NM_001251674 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max leucine-rich repeat protein (LOC100306422), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254120 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100816279), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3822275..3822333 (+ strand)
Length: 59
Type: five_prime_UTR
Position: Chr08:3822334..3822589 (+ strand)
Length: 256
Type: CDS
Position: Chr08:3822879..3823011 (+ strand)
Length: 133
Type: CDS
Position: Chr08:3823186..3823257 (+ strand)
Length: 72
Type: CDS
Position: Chr08:3823720..3823863 (+ strand)
Length: 144
Type: CDS
Position: Chr08:3823983..3824054 (+ strand)
Length: 72
Type: CDS
Position: Chr08:3824148..3824219 (+ strand)
Length: 72
Type: CDS
Position: Chr08:3824703..3824769 (+ strand)
Length: 67
Type: CDS
Position: Chr08:3824770..3825078 (+ strand)
Length: 309
Type: three_prime_UTR

>Vigan.08G048800.01 class=Sequence position=Chr08:3822275..3825078 (+ strand)
AACCAATGCG TGACTTTTCC ACTCATCGCC CGTTTGAACC ATAATATAAT AATTTGACCA TGACTCAGTC TTCTTTTTCC
AACCACTGCC AACTTGGTCC ACTTTTTTCT TCTCTTCTCT CTTCTTTAGT CCTTGCCCTT CACCTTTTTT TCCTTCCTCT
TTCCAAAGTC TACCTCTTTC TTTCTTACTT TCTCTCATTC AACCAAAAGA TTGCTCACAA AGGAGGAATA ATGGCAGTGA
CACCTTTCGT TTCCCTCTCT TTCTTGTTTC TCTTTCTCCA TTACCCCCTC CTATCCCTGT CAACCAATCC GGAAGGTATG
CCCTACTGCT TCATTTTTCT CAGTTGAGGA TGCTCAATTT GGTTTCTCAA GAGTTAATGC CACCTGGGGA ACTTAATCTT
CAAAGCTCTT CTTATGGCTA GATCATATGC TGTTTTGTTT CAATTGTTTG GTTTTCCTTT TCTTAATTTT ATTTTTCTTG
GGAATGGACA TGCTTAAATG CATATTGTGT TTCCAAAACT ATCAATTTTC TTTGGCCTCT TCTAAGCTAG AAAAGGGACT
TGGTTTGGTC TTAATAGTTT GATTTGATCC AAATTATTGT GTAGGGAATG CTCTGCATGC TTTGAGAAGC AGGCTTTCTG
ATCCCAACAA TGTGTTGCAG AGTTGGGACC CAACACTGGT TAATGCCTGT ACTTGGTTCC ATGTTACCTG TGATTCCAAC
AATCATGTGA TTCGCTTGTA AGAATCCCTT TGTCCTTTTT CTTTTCTTTC TGTTAGTTTC TTCTAGAGAT ATAGGTTTCT
TTTTCTTTTA CCTGTGACTC CAACCATCAT GTTTTTTTTT TCTTTTGAGT CTTTTGGTTG CAGTAACCTG GTTCGGGCTT
TCTAATAAGT TGTATAATCT TTGGATTTCA GAGACTTGGG CAACTCTAAC GTTTCTGGGA CTCTGGGCCC AGAACTTGGC
CAGCTACAGC ATCTTCAGTA CCTGTATGGT CTTCTTCCCT TGCCTGTTAT AGCTCAGAAG TTCAGAAACT AGCTCCTGTT
TGATCTGTTG TTTGATTTAA AAACATGTGC CATCTGACAA TTTTCAAACA GTGCAATTGA ACGAGTTAAT TTTTGGGTTT
TATTTTGTGC CAGTTTACAT TATTTTTTGT CCCAGGCTAG AGTTAGGAGA GCACCAAACT ATGGACTATT CCTACAATTT
AGTTTAATCG CGTCTTGCAC GTGTTTGCAG ATTATTTGTA GAAAATAACC ACTTCAATGA CTAATTTCTC TCTAGAAACT
GATAAAAATC AAGCCATTTC TTTAACTAAG TTGAACCAAA CGCATGTCGG GGCAACTGGA TTATATTTTT GCTTAACCAA
ATACGCAAAA GTTTTGTTTT TCTTTGTGGG GTGGAGGTTA GTTTTTCAAT AAACGGATGA GAGATTGTGA AATTCTTGAT
TACAGGGAAC TCTACAGAAA TGACTTAACA GGAAAGATTC CTGAGGAACT TGGTAACTTG AAGTCACTAA TCAGCATGGA
TTTGTATGAT AACAAGTTGG AGGGAAAGAT TCCAAAGTCC TTTGGAAAGT TGAAGTCACT TAAATTCCTG TAAGCGTGTT
TATGCTGATT TGCCAAAATT TTGTTGACCT TTTGTTCTTG ATTTTTGTTT TCACTGATGT AAAAATTGCT GGCTGTTTTA
CTCACGCATT TTTGCTTTGA TGAATTAGGC GGATAAACAA CAACAAGTTG ACAGGATCCA TCCCAAGAGA ACTCACTCAT
CTCACTGATC TCAAAATCCT GTGAGTTTTC TTTGCATCTT GTGTTCTATA CTTGTTCTTT TATATACTTC TGCGATTAGT
TTATCAGCAA CTTTTGAACA CCAATTTTTG CAGTGATGTT TCTAATAACG ACCTATGTGG AACAATACCA GTAGAGGGCA
ACTTCGAATC TTTCCCAATG GAAAGGTATA CCAAATCTTT CATTGTCATC CCATATTCTT AACAAGTGGC TTACCAATCC
AAACATGTTT TGATAAACAG ACAAGGTTTA GTCATTTCAA ACTGACAACA CATTTTCTTG CACCAAGCAT GTAAAAACGT
CAATATCAAT ACGAATAGTT AGTGTTATTT TTCTGTTAGA TACTTGGATT CAAACACGAG AAAACCAGAA ATCATCTAGT
GCTAGCTTTC TTGCAATACT TCCTCACTAG TATCATTAGG CACGGTGCCG AGGTTATTCC TCTACAGGAT TAGATGATAC
GATTTGACAT GCATGCATGA GATCTAATTG ATTTGAATGA AATATCCAAA AGATAAAATA CACTGGTGCA TTTGCAAACG
TGATGGCACA AAATCTTCGC CTGTGAATTA ATTTGAAGCA GGAATAGTTT CGATTTCAAC ACTAATCTAA TTGATTTAGT
ATTTACGAAA TGTTTCTCCT TGTTTCAGTT TTGAAAACAA CAGGTTTTGT GGTCCTGAAC TGAAAGGACT TGTTCCATAT
GATTTTGGAT GCTGAAGAAA GATATAAATC GCAAGGAAGA GGCTTAGTTT ACTTGGGAAA GGAAGGGAAA GGGTGGTGTT
AATTGCCCAT CAAAATTTCC TCACCATTCT TACACTCTTA GATGGGAAAA AGTTGAAATA TGTGTTTTTC TTATTTTGTT
ATAAAGAAAG AAGTGATTTA AAAATGTTCT GAAAAACAAT TGTGTGTAAA TAACATTGTT AATGATGTAT GTTTCACCCG
AATAGGAATC TAAAAATGTC AGGCTTGTAT GTCCATCTAT CTAATAACAT CTTTCCATGG CTTTATGGCA TAGTTTTGCA
GTAA

>Vigan.08G048800.01
AACCAATGCG TGACTTTTCC ACTCATCGCC CGTTTGAACC ATAATATAAT AATTTGACCA TGACTCAGTC TTCTTTTTCC
AACCACTGCC AACTTGGTCC ACTTTTTTCT TCTCTTCTCT CTTCTTTAGT CCTTGCCCTT CACCTTTTTT TCCTTCCTCT
TTCCAAAGTC TACCTCTTTC TTTCTTACTT TCTCTCATTC AACCAAAAGA TTGCTCACAA AGGAGGAATA ATGGCAGTGA
CACCTTTCGT TTCCCTCTCT TTCTTGTTTC TCTTTCTCCA TTACCCCCTC CTATCCCTGT CAACCAATCC GGAAGGGAAT
GCTCTGCATG CTTTGAGAAG CAGGCTTTCT GATCCCAACA ATGTGTTGCA GAGTTGGGAC CCAACACTGG TTAATGCCTG
TACTTGGTTC CATGTTACCT GTGATTCCAA CAATCATGTG ATTCGCTTAG ACTTGGGCAA CTCTAACGTT TCTGGGACTC
TGGGCCCAGA ACTTGGCCAG CTACAGCATC TTCAGTACCT GGAACTCTAC AGAAATGACT TAACAGGAAA GATTCCTGAG
GAACTTGGTA ACTTGAAGTC ACTAATCAGC ATGGATTTGT ATGATAACAA GTTGGAGGGA AAGATTCCAA AGTCCTTTGG
AAAGTTGAAG TCACTTAAAT TCCTGCGGAT AAACAACAAC AAGTTGACAG GATCCATCCC AAGAGAACTC ACTCATCTCA
CTGATCTCAA AATCCTTGAT GTTTCTAATA ACGACCTATG TGGAACAATA CCAGTAGAGG GCAACTTCGA ATCTTTCCCA
ATGGAAAGTT TTGAAAACAA CAGGTTTTGT GGTCCTGAAC TGAAAGGACT TGTTCCATAT GATTTTGGAT GCTGAAGAAA
GATATAAATC GCAAGGAAGA GGCTTAGTTT ACTTGGGAAA GGAAGGGAAA GGGTGGTGTT AATTGCCCAT CAAAATTTCC
TCACCATTCT TACACTCTTA GATGGGAAAA AGTTGAAATA TGTGTTTTTC TTATTTTGTT ATAAAGAAAG AAGTGATTTA
AAAATGTTCT GAAAAACAAT TGTGTGTAAA TAACATTGTT AATGATGTAT GTTTCACCCG AATAGGAATC TAAAAATGTC
AGGCTTGTAT GTCCATCTAT CTAATAACAT CTTTCCATGG CTTTATGGCA TAGTTTTGCA GTAA

>Vigan.08G048800.01
ATGACTCAGT CTTCTTTTTC CAACCACTGC CAACTTGGTC CACTTTTTTC TTCTCTTCTC TCTTCTTTAG TCCTTGCCCT
TCACCTTTTT TTCCTTCCTC TTTCCAAAGT CTACCTCTTT CTTTCTTACT TTCTCTCATT CAACCAAAAG ATTGCTCACA
AAGGAGGAAT AATGGCAGTG ACACCTTTCG TTTCCCTCTC TTTCTTGTTT CTCTTTCTCC ATTACCCCCT CCTATCCCTG
TCAACCAATC CGGAAGGGAA TGCTCTGCAT GCTTTGAGAA GCAGGCTTTC TGATCCCAAC AATGTGTTGC AGAGTTGGGA
CCCAACACTG GTTAATGCCT GTACTTGGTT CCATGTTACC TGTGATTCCA ACAATCATGT GATTCGCTTA GACTTGGGCA
ACTCTAACGT TTCTGGGACT CTGGGCCCAG AACTTGGCCA GCTACAGCAT CTTCAGTACC TGGAACTCTA CAGAAATGAC
TTAACAGGAA AGATTCCTGA GGAACTTGGT AACTTGAAGT CACTAATCAG CATGGATTTG TATGATAACA AGTTGGAGGG
AAAGATTCCA AAGTCCTTTG GAAAGTTGAA GTCACTTAAA TTCCTGCGGA TAAACAACAA CAAGTTGACA GGATCCATCC
CAAGAGAACT CACTCATCTC ACTGATCTCA AAATCCTTGA TGTTTCTAAT AACGACCTAT GTGGAACAAT ACCAGTAGAG
GGCAACTTCG AATCTTTCCC AATGGAAAGT TTTGAAAACA ACAGGTTTTG TGGTCCTGAA CTGAAAGGAC TTGTTCCATA
TGATTTTGGA TGCTGA

>Vigan.08G048800.01
MTQSSFSNHC QLGPLFSSLL SSLVLALHLF FLPLSKVYLF LSYFLSFNQK IAHKGGIMAV TPFVSLSFLF LFLHYPLLSL
STNPEGNALH ALRSRLSDPN NVLQSWDPTL VNACTWFHVT CDSNNHVIRL DLGNSNVSGT LGPELGQLQH LQYLELYRND
LTGKIPEELG NLKSLISMDL YDNKLEGKIP KSFGKLKSLK FLRINNNKLT GSIPRELTHL TDLKILDVSN NDLCGTIPVE
GNFESFPMES FENNRFCGPE LKGLVPYDFG C*