GBrowse Details

Vigan.08G046900.01

Basic Information:
Name: Vigan.08G046900.01
Multiple alignment
Variant Information
Position: Chr08:3684537..3688838 (- strand)
Length: 4302
Functional Information:
Description: Similar to TIP41-like family protein. [V5N8L1, Phaseolus vulgaris]
InterPro: TIP41-like protein (IPR007303)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:46.03,37.78,20.01,22.68,34.44,29.47,23.15,20.58
Arabidopsis thaliana homolog: AT4G34270.1
Automatic updates:
Name: NM_001252773 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max TIP41-like family protein (LOC100815886), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254051 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max TIP41-like protein-like (LOC100811660), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3684537..3684761 (- strand)
Length: 225
Type: three_prime_UTR
Position: Chr08:3684762..3684866 (- strand)
Length: 105
Type: CDS
Position: Chr08:3686448..3686576 (- strand)
Length: 129
Type: CDS
Position: Chr08:3686844..3686885 (- strand)
Length: 42
Type: CDS
Position: Chr08:3686990..3687049 (- strand)
Length: 60
Type: CDS
Position: Chr08:3687437..3687547 (- strand)
Length: 111
Type: CDS
Position: Chr08:3687749..3687839 (- strand)
Length: 91
Type: CDS
Position: Chr08:3688064..3688249 (- strand)
Length: 186
Type: CDS
Position: Chr08:3688458..3688603 (- strand)
Length: 146
Type: CDS
Position: Chr08:3688604..3688838 (- strand)
Length: 235
Type: five_prime_UTR

>Vigan.08G046900.01 class=Sequence position=Chr08:3684537..3688838 (- strand)
TTTTAGAATG TTTCTGAATA ATTTGTAAAT TTTAATATAT TATGGGCTTT ATTTTCAGAA AATAAAAAAA TAACAAAATT
ATTTTGATTG TTTTTCTGTA TAGCAAGAAA TTATGGAAGT ACAAAAGGCA AGGTATGTGG CTGACCGGAA GGCCCATTTC
TAATACCCAA TTCTTAAAAG AGAGTCTCTG TGACTGTAAC TCGGGAATCA CCCAGTGAGT TGAAACCCGA AGGCGATGAT
GGATTTGGAA GTCGACGAGA ACAACTTGAA AGCCGCCGGC GCCGAGCTCT TCGCCGACGA TGGCCGACGA GGCATTCGCA
TCAGTGGTTG GTCGATCGAG ACTCGGAGGC ACTCTATACT GAACTCTTCC GCCATCCAGG AGTGAGTGAT TATCGCATCA
CACTTAACCT AGCTTCTGTA ATTCTAATTC GGAAAACTTT TTATTCAGTT GTACTTTATT TTATTGAAGA AGAAGTTGTG
TTCTAGTGTT GCTTTTACAA GCTTCAGCGT CCTCATCATG TTTTGGCCGT TGATATTTTT GAAGAAATAT CAAAGAACTT
CGATTTGATG ATGGATGTGT GCTTTTCAGG TGGGAACAGA AACTCAACAC GTCTCATTTA CCAGAAATGG TTTTCGGGGA
GAACACTTTA ATTCTGAGAC ACTTTAGCAG TGGCACCAGA ATTCACTTTA ATGCATTTGA TGCTCTTTGT GGCTGGAAAC
AGGAAGCCTT GCCGCCAGTT GAAGTTCCTG CAGCTGCTAA GTGGAAATTT AGAAGGTAAG CTGTTGGCAT GTTCACTTTC
ATATTTATGC ATTGCTCAAA ATTCAAATGA CATTGCTTAG GTTCATTTCG TCTTTTCTTT CTTGCAAGAG ATTTGTATCT
AGTATGAAAC TGCCTGGTAA TTGTTCGTGC AGTCTACCCC TCCCATTGAA TAGGATGTGT AAATGTCTGA ATTACCGTTG
TGTTAGTTAG TCTCACATTC TTTTGGGGGA AATGTGCAGC AAGCCCTCTC AGCAAGTAAT ACTAGATTAC GACTACACCT
TTACAACACC TTATTGTGGA AGTGGCAATA TTGAGATTGA TAAAGATGTG GTACGCATTC TTTCTTTGTT TTTCTACAGA
CTAAGCTGTC TTCCTGAATG CCATTTTTTA TATATGAGTC ACCAGTACAA TTCTACGTGA GTTTTTTTAT GCCCACTGCC
ACATATTGAT TATTTTTTGT TATAAGGAAA CCAGGAAACT TGAATTAGTA TTTTATTTAT GCTTTATTTA AGATATATTT
ATTTATGGTA GAATGAGGGA GAGATATCGA AGGAAACCAG TGATATCCTT TGGGAAGACT GCAAGGATCA AATTGATGTA
GCAGCACTTG CATCCAAAGA GCCCATACTT TTCTATGATG AGGTCTGTAA TGAATACATT GAATGATTGC TTAGCAAATT
TCTGTGCACA GAACTGCTTT TGTATTGTAA TGTCTCTATG AGAAACAATT TTGCGTGGTT CATGAGGCAA GAACTAAGTG
AAAGAAAGGA AAAAGATATA AATAACATCC TTATTAGTTC TTTAGTATAG TGTTTCGTTT TTAGAAATTG ATCATGCTGT
TAGTCTGCAC ATGTGAAATA GTTTAGTGAA ATCGGCTATA TATTAATGAT AGTCAAAAAC AAAAAATCCT AAATGAATAT
GCTCTTGTTT TACTTCTGAG TGCCTTACAT ATAACAAATT GTCGACATTA TCTTCCTTGA TGTTATTTAC TTCCATCCTA
AATAAATGAA TCCTCATTGT GAACAACAGG TGGTGTTATA CGAGGATGAA CTTGCTGATA ATGGAGTATC ACTTCTTACT
GTAAAAGTGG TAATCACTAA TTTGGTTTCT TCTGTTGATA GGAGATTTGA TTGTTGTTAT GCAAAACTAA TATGATTACC
AATGCCTGAT GATATTGCTT CTTGGTTTTA CAGAGAGTAA TGCCAAGCTC TTGGTTTCTT CTGTTGCGAT TCTGGGTGAG
CTACTCTGTT TCTATCCTAA ATCAGAAATT TCCTTCAGTC TGAAGTGATG TTTCACTAGA AATTTAGTTA TTTCATTTTT
ACTAGTACTC TTATGGTTGA TAGTGTAATT TTGGTCTTAT AAAATAAGGA AGTTATTGCC AAATATCTAC GATACCTCAC
AAACATTGAG ATTAGGGTCC TTGTGTCAGC AGCCCATTTT ATGGCATCAT CACCACTTTC CCTAAACTTG AATTTTAACT
GAATACTCTG GTACTGATGC AGCTTAGAGT TGATGGAGTG CTGATTAGAT TGAGAGAAAC ACGTATGCAT TGTGTGTTTG
GTGGACATAC AAGTCCCATT GTACTTCGAG AGAGTTGCTG GAGAGAATCT ACATTTCAAG CTTTGTCTGC AGTAAGCTTC
TGCTATGCAC TTGTGCTTCG TTCTTTACAT TAATTCTGAA CATTACTCTC TTTTTCTGTT GTTGGCCATA GTAAAGAGAG
AAAGTAAGAG GGTTGATGCT TGTCTATTAA TCTGTGCTGA TCTAGTCAAT AATCTGGACT TTAGGTTGTT TGTCTACTCT
TTTCGTACTT CACTATGTTT GTTTGTTTCT TTTGTTGTTT GAGATCCTAG ATGGAGTGCT AATGTTAACT AAATGGCTTC
AACAACTCAA AAGGGGGATT AATTTGGTTG TGAAGCCAAG ATTCTTTGAA AAATCTTCCT CTTTTGAAAG TGTTTTATAC
ATACATACAT ACATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT
ATATATAGTA CAAGTGCAAG CTAAAAGAAA AGGCTATGTG TTTAGGTCTC TAATGAAGCA CTGGATTGGA GGTGATATTA
AGGGCTGCCT ATAGTACAAT TTCACCTTCT TAAATCACAA ATTTATAATT CTTGAAGGAG TTGTTTAATT CATACAAGTT
TACAAGTGTC TAAAGCCATT GATCTATATT CAAATTCTGC TCTGGAACAA CAACACATAT TTTCTTGCTT TTCCAAGAGA
TGATATTCCC TCCGATGAAT ACACAATATC TTGTGGTTAA TCTTCTATCA ATGTGATAGC CAATACAATC TGCATTACAA
TATTCCCTCC AATGAATACA TGATATCTTC TGGTGGATCT TCTGTCAATG AAGTAACTAA GAATGCAATA AATAACTAAT
TGGGTATGTG AGAGACCAAT ACTGTGAAGT TACTTTCGAG GGCAAGCTAC TTTGTGTGGA GAAGGGAATG AATTAGAAAT
GCTAAGTAAA TTTTCCTGTG CTGGTTTAGT ATAAAAAACG AAAGATGATT TTTAAGTTCT ATTAGATGTG TAAATAATAG
AAGGGAAATG TCAAGCTTAT AAAATGAAAA TGCTGGTCCC AGGTTGACTG TCATATTTTC TTGTTTATTC TGTCATGTCC
CTGTTTGTCT GGACAGATTG GAATACGAGG CCATGCATTT CCTCGAAATA TCTTTACTAA TCTGGTATTT TTTGCTAATA
AACAGAAGGA ATCACAGGCT CTTCTTTAGT GAGCAACGAG TGTATCTATC ATAATTTATT TTAAAATACA ACATTGTCTT
GGTCAATTAA AACTAAAGGA TGGATACATC TCTTATTTAC TTTATAGTAG TTTTTTTCCC TCGAGAAAAC ATCTAATCTC
TCGATTATTT CTCCTTCCCT TTAAAATCTT TCCAGATCCT ATGTGTCTAT TTCCAAGCCT TGTGACAATG ACAGCCGGCC
CAGTGAGCGG TCGCTGTGAT AGACTATGTT TTAGTTGCTT TGATTAATTT TTTCTTGTAT CAAATTAGAT TTAGCTTTTT
GTTCCCATGC TTTCCTAATA TTCTTTTACT GCTTTTATCT CTGTAAGTTT TCTTTGGCGT GGCTGTCATT TACAAGTTAC
AACTTATTGT TGAGCGCCTT TGTCATTGCA TTTGATTGTG TTATTGATGC AGCAAGATCA CCCTTTTGAT TCTGGTGCGT
ATGGTGATCC AAGCTTCATC AGCCAGAAGC TCCCCATCAT AATGCATACG ACCAAAAAGC TTGTAATTTC CTCTTAAGTT
ACAAGACTGT AAATTCGCGT AGCAGAGAAG GGTTTCTGAT AAATTCTTAT GTTGTTCATA TTTTATTCAT CGTTTTACCT
GGCTGTTAGA ATTTAGAAAC CATAAATATC TTCTTATGAG ATAAGCTCTG GGTGTTTAGT TTTTGTACGA AAGATGGGGG
GATCCAATTT TAATGTGAGG GACTCATTTC ACATGGAAAT AAATGAGAGG TTATACTTAA AG

>Vigan.08G046900.01
TTTTAGAATG TTTCTGAATA ATTTGTAAAT TTTAATATAT TATGGGCTTT ATTTTCAGAA AATAAAAAAA TAACAAAATT
ATTTTGATTG TTTTTCTGTA TAGCAAGAAA TTATGGAAGT ACAAAAGGCA AGGTATGTGG CTGACCGGAA GGCCCATTTC
TAATACCCAA TTCTTAAAAG AGAGTCTCTG TGACTGTAAC TCGGGAATCA CCCAGTGAGT TGAAACCCGA AGGCGATGAT
GGATTTGGAA GTCGACGAGA ACAACTTGAA AGCCGCCGGC GCCGAGCTCT TCGCCGACGA TGGCCGACGA GGCATTCGCA
TCAGTGGTTG GTCGATCGAG ACTCGGAGGC ACTCTATACT GAACTCTTCC GCCATCCAGG AGTGGGAACA GAAACTCAAC
ACGTCTCATT TACCAGAAAT GGTTTTCGGG GAGAACACTT TAATTCTGAG ACACTTTAGC AGTGGCACCA GAATTCACTT
TAATGCATTT GATGCTCTTT GTGGCTGGAA ACAGGAAGCC TTGCCGCCAG TTGAAGTTCC TGCAGCTGCT AAGTGGAAAT
TTAGAAGCAA GCCCTCTCAG CAAGTAATAC TAGATTACGA CTACACCTTT ACAACACCTT ATTGTGGAAG TGGCAATATT
GAGATTGATA AAGATGTGAA TGAGGGAGAG ATATCGAAGG AAACCAGTGA TATCCTTTGG GAAGACTGCA AGGATCAAAT
TGATGTAGCA GCACTTGCAT CCAAAGAGCC CATACTTTTC TATGATGAGG TGGTGTTATA CGAGGATGAA CTTGCTGATA
ATGGAGTATC ACTTCTTACT GTAAAAGTGA GAGTAATGCC AAGCTCTTGG TTTCTTCTGT TGCGATTCTG GCTTAGAGTT
GATGGAGTGC TGATTAGATT GAGAGAAACA CGTATGCATT GTGTGTTTGG TGGACATACA AGTCCCATTG TACTTCGAGA
GAGTTGCTGG AGAGAATCTA CATTTCAAGC TTTGTCTGCA CAAGATCACC CTTTTGATTC TGGTGCGTAT GGTGATCCAA
GCTTCATCAG CCAGAAGCTC CCCATCATAA TGCATACGAC CAAAAAGCTT GTAATTTCCT CTTAAGTTAC AAGACTGTAA
ATTCGCGTAG CAGAGAAGGG TTTCTGATAA ATTCTTATGT TGTTCATATT TTATTCATCG TTTTACCTGG CTGTTAGAAT
TTAGAAACCA TAAATATCTT CTTATGAGAT AAGCTCTGGG TGTTTAGTTT TTGTACGAAA GATGGGGGGA TCCAATTTTA
ATGTGAGGGA CTCATTTCAC ATGGAAATAA ATGAGAGGTT ATACTTAAAG 

>Vigan.08G046900.01
ATGATGGATT TGGAAGTCGA CGAGAACAAC TTGAAAGCCG CCGGCGCCGA GCTCTTCGCC GACGATGGCC GACGAGGCAT
TCGCATCAGT GGTTGGTCGA TCGAGACTCG GAGGCACTCT ATACTGAACT CTTCCGCCAT CCAGGAGTGG GAACAGAAAC
TCAACACGTC TCATTTACCA GAAATGGTTT TCGGGGAGAA CACTTTAATT CTGAGACACT TTAGCAGTGG CACCAGAATT
CACTTTAATG CATTTGATGC TCTTTGTGGC TGGAAACAGG AAGCCTTGCC GCCAGTTGAA GTTCCTGCAG CTGCTAAGTG
GAAATTTAGA AGCAAGCCCT CTCAGCAAGT AATACTAGAT TACGACTACA CCTTTACAAC ACCTTATTGT GGAAGTGGCA
ATATTGAGAT TGATAAAGAT GTGAATGAGG GAGAGATATC GAAGGAAACC AGTGATATCC TTTGGGAAGA CTGCAAGGAT
CAAATTGATG TAGCAGCACT TGCATCCAAA GAGCCCATAC TTTTCTATGA TGAGGTGGTG TTATACGAGG ATGAACTTGC
TGATAATGGA GTATCACTTC TTACTGTAAA AGTGAGAGTA ATGCCAAGCT CTTGGTTTCT TCTGTTGCGA TTCTGGCTTA
GAGTTGATGG AGTGCTGATT AGATTGAGAG AAACACGTAT GCATTGTGTG TTTGGTGGAC ATACAAGTCC CATTGTACTT
CGAGAGAGTT GCTGGAGAGA ATCTACATTT CAAGCTTTGT CTGCACAAGA TCACCCTTTT GATTCTGGTG CGTATGGTGA
TCCAAGCTTC ATCAGCCAGA AGCTCCCCAT CATAATGCAT ACGACCAAAA AGCTTGTAAT TTCCTCTTAA 

>Vigan.08G046900.01
MMDLEVDENN LKAAGAELFA DDGRRGIRIS GWSIETRRHS ILNSSAIQEW EQKLNTSHLP EMVFGENTLI LRHFSSGTRI
HFNAFDALCG WKQEALPPVE VPAAAKWKFR SKPSQQVILD YDYTFTTPYC GSGNIEIDKD VNEGEISKET SDILWEDCKD
QIDVAALASK EPILFYDEVV LYEDELADNG VSLLTVKVRV MPSSWFLLLR FWLRVDGVLI RLRETRMHCV FGGHTSPIVL
RESCWRESTF QALSAQDHPF DSGAYGDPSF ISQKLPIIMH TTKKLVISS*