GBrowse Details

Vigan.08G046100.01

Basic Information:
Name: Vigan.08G046100.01
Multiple alignment
Variant Information
Position: Chr08:3628642..3633399 (+ strand)
Length: 4758
Functional Information:
Description: Similar to Uncharacterized protein. [I1LEI8, Glycine max]
GO: Biological Process: methionine biosynthetic process (GO:0009086)
Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
Molecular Function: S-methyl-5-thioribose kinase activity (GO:0046522)
InterPro: Aminoglycoside phosphotransferase (IPR002575)
Methylthioribose kinase (IPR009212)
Protein kinase-like domain (IPR011009)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:57.66,32.06,29.24,42.50,26.98,40.28,35.54,46.35
Arabidopsis thaliana homolog: AT1G49820.1
Automatic updates:
Name: NM_001289298 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max methylthioribose kinase 1-like (LOC100807564), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3628642..3628833 (+ strand)
Length: 192
Type: five_prime_UTR
Position: Chr08:3628834..3629019 (+ strand)
Length: 186
Type: CDS
Position: Chr08:3629198..3629507 (+ strand)
Length: 310
Type: CDS
Position: Chr08:3630077..3630251 (+ strand)
Length: 175
Type: CDS
Position: Chr08:3630340..3630541 (+ strand)
Length: 202
Type: CDS
Position: Chr08:3632550..3632764 (+ strand)
Length: 215
Type: CDS
Position: Chr08:3632992..3633157 (+ strand)
Length: 166
Type: CDS
Position: Chr08:3633158..3633399 (+ strand)
Length: 242
Type: three_prime_UTR

>Vigan.08G046100.01 class=Sequence position=Chr08:3628642..3633399 (+ strand)
TTCTCAAAAC AAAATCACAG TGTATATGGG TTTAGGAGAA TCAAAATGAA ATTGGTGTGA AAAAAAAATC TCAGCTTCTA
GCGTGCTTCT TCCAAATAAA GAATAGTAAG ACGCACTTCA AAGATTCCAT CAATTTGGGA CTTGAGAGAG TACCATTGCT
CCACTTCCTC CTCGCCACCA TCGGCGGCCA CCATGGTTTT CTCGGAGTTC CGACCGCTCG ACGAGAAGAC TCTCATCGAA
TACATAAAGT CCGTTCCTGC TCTCTCCTCC AAACTCGCCA ACAGTTTCGA TGACTTGTCT GTTAAAGAAG TCGGAGATGG
CAATCTTAAC TTCGTGTACA TTCTTTCCAA CTCCAAAGGT TCTCTTGTCA TCAAACAGGT AACAGACACT TTCACGATCC
GAAACCCAAA GGCCTTATGC TCCAACAAAT CATGGGCAAT ATCCAATTTC GTTTCTTTTT TCGTCTCAAT GTTTCAAAGC
TCAGACTTCT GTCTTTGGGG TTTTGAATTG TTTCAAAGCT CAAACTTCTC TCTTTGGGGT TTTGAATTTG TTATAGGCTC
TGCCGTACGT TCGTTGCATT GGGGAATCGT GGCCTATGAC AAAGGAGAGG GCTTATTTTG AGACGCTGGC ACTGAAAGAA
GAGGGTCGTT TGAGCCCTGA GCATGTCCCT GAAGTATATC ACTTTGATCG TACCATGTCT TTGATCGCCA TGCGTTACTT
GGAGCCCCCG CATATAATCC TCAGAAAAGG GTTGATTGCA GGAATTGAAT ACCCTCTTTT AGCTGAGCAT ATGGCTGATT
TCATGGCAAG GACACTCTTC TTCACGTCTC TGCTTTTCCG CTCTACTACT GAGCACAAAC GAGACGGTAT AACCTTACCC
TTGTCACTTT ATTGAGAAGC TAGACTAGGG AACTTCTAAA AATGTTAGGG TTTATAAATT GATTTAACTT ACAAATGTCT
GGAAGTATAA ATTGATTTTA ACTTATGCTA GAACACTGAC TCATTTTGCC TCTCTTAATT CATTTTAGGT AATCTATTCC
ATGATCTCGA TAACTGTTTC CATTTTAAGG TTCAGTCCCT GTTTGAGAAA AGTACTATTT TTATTTATAC GGCTTTTTGT
GACAGCTTAT ATCTGTCAGA TTTTTTTATT ATGGTTTTAC CCACCAAAAT GACCAAAAGC TAACTTTTAT ACTCGTGTAG
GGATCTACTC TATTCTGTTT CCTAATTTAT GAACTAAAAT TTTAAATAAA GACGGCATGG ACCAAGTAAA TAGTTCAACA
TTCATTTTAT TTTCTTGTAC AATCAGTGTA TCATTGTGAA ATTTATCTAT ATTTGCTCCG AACGATATCC TCTTTTTGTG
ACTATAAGGG AGGTCTTACA CATAATTTAT CTATGGGTGT TACCCTTAAT TTGAATGCAT ATTTGCTTCG TGCAGTTGCC
GAATTTTGTG GCAATGTGGA GCTATGCAGG CTGACTGAGC AGGTCGTTTT CTCTGATCCT TATAAAATTT CCGAATATAA
TCGTTGGACT ACGCCCTATC TTGACCGTGA TGCTGAGGCT GTCCGGGAAG ACAACCTGCT GAAGCTTGAA GTTGCTGAGC
TGAAATCTAT GTATTGTGAC ACACTTTTTG TACCCATTAT ATATAATAGT TTTGTTGTTA CATTTTTGTT TTAAGAATAA
GAATTTATGT TCCTGTAGGT TCATCGAGAG GGCCCAGGCA CTATTACATG GTGATCTACA CACTGGTTCT GTGATGGTTA
CTGGTGAATC AACTCAAGTT ATTGATCCAG AATTTGCATT TTATGGACCG ATGGGTTTTG ATGTTGGAGC ATTCTTGGGA
AACTTGATTT TGGCCTTCTT TTCTCAAGAC GGACATGCTG ATGAAACAAA TGATCGAAAG GTGGGAACTC TTTTTCCATG
TCTTCCGTGA TCCTTACTTA TCCTCTTCTT TGTATGCTAT AGTTGTTACT TATTCACATA TTTATCACAT TTATTGTTAT
TGTCCATAAT CGAAGTAAAA CTTAGACTCT TTATTTTTCA GTGCTGTACC TTTTATTTCA CTCTGGTAGT TTTGTTTCAT
GACAGAGGCT TGTTTTCTTC AAGAGTCCTA CATATTTCAA GACATATCAA AGCATTTGCA CCAGCTATTT CTGTTTTTTG
CTGTCTCTGT GCTTATTTAT AGTTCTTAAT TTCGTGTATT GTTCTTTTGT TTTGTCTGAG GTGCCAATGA CTGTTGCCTT
GCTATCCTAA GAGAAGTATT CCGGTGTACT TATTGATGAG TAACCAGAAA TATACCATGT GCTTTTTTTA GTCCAGCACT
ACTAACAAGT GAAGACTTGG TTTTGGGATA GAATTTTTTC ATGTCTGTGT TCAGCACATG GTCTTGCACT TAGTACTTTT
TAGGAGTTCC TTTCTCTCTT TCTGTTCTTT CTCCTGTTTG GACTTTGTTG AAGATTTCTT CTCCTCGGAC CTTGTACTTC
TATTGGTGTG TTTGAATTTT CATTCAAGAG CACGAAATGG ACATTCAAAT TCATGATACC ATGCCCATGG ATTGACTTGA
ACATGCTTGG AATTTGTGCT AATTATAAAT CAAGCACTCA TTACATCGTA CTTTTGTTAA AATCAAAGTG GAACGTTTGG
TTGGAACTGC ACCTGTTGTT AGCTGAAGGA CCATTGTTTT GTTTATCAAC AGCTGAGCTT TGGCATTTAA ACTGTAATCC
TAAATGATTG CTGAAGACCA TTGATTGTAG CGGAAAATGA GTTTTATTCC TGATGTAAAA TTCTAAGTAT AATTAGTGTG
TATTATTTAA TTTTTATTTT AAGTATAATT TTGTTATTAA GATTTATAAT GATTTTATTT ATTTATTTTT AATTATAACC
TATGTTTTTG AAAATTATTC TGATATTAAA CTATATATAT ATATATATAT ATATATATAT ATATATATAT ATATTTTAAA
TTTATTCCAT TATAACTCAA TTTATTTATT TTATTTATCT TTGTGTGCTA TAGTTGTTAC TTAGTCACAT ATTTATGGTT
ATTGTCCATA ATCTAAGTAA AACTTAGACT CTATTTTTCA GTGTTTTATC TTTTATTTCA CTCTGGTAGT TTTGTTTCAT
GACAGAGGCT TGTTTTCTTC AAGAGTCCTA CATATTTTAA GTCATATCAA GGCATTTGCA CCAGCTATTT CAGATTTTTG
CTGTCTCTGT GCTTATTTGT AGTTCTTAAT TTCCTGTATT GTTCTTTTGT TTTGTCTGAG GTGCCAATTA CTGCTGCCTT
GTTATCCTAA GAGAAGTATT CCGGTGTACT TGTTGATGAG TGATAAAAAA TATACCATGT GCTTGTTTTA GTCCAGCACT
ACTAACAAGT GAAGACTTGG TTTTGGGATA GAATTGTTTC ATGTCTGTGT TCAGCACATG GTCTTGCACT TAGTACTTTT
TAGGAGTTCC TTTCTCTCTT TCTGTTCTTT CTCCTGTTTG GATTTTGTTG AAGATTTCTT ATCCTCGGAC CTTGTACTTC
TATTGGTGTG TTTGGATTTT CATTCAAGAG CACGAAATGG ACATTCAAAT TCATGATACC ATACCCATGG ATTGACTTGA
ACATGCTTGG AATTTGTGCT AATTCTAAAT CAAGCACTCA TTACATTGTA CTTTTATTAA AAACAAAGTG GAACATTTGG
TTAGAACTGC ATCTGTTGTT AGCTGAAGTA TCATTTTGTT TAACCGTTGT ATCTTCACCT CATTTAGGTG GCCTTTTCTA
GTCACAGGAG TTACTGCATC ATCACGATGC AGGGTTCTTC AAATAATGAG CTTTGGCATT TAAACTGTAA TCCTAAATAA
TTGCTGAAGA CCATTGATTG TAGTGGAAAA TGAGTGTTAT TCCTGATGTA AAATTCTATG TTGTGCAGGC CTATAAGGAG
TGGATTCTGA AGACAATCGA AGACACATGG AACCTTTTCC ATCACAAATT CACTTCACTT TGGGATGAGC ACAGTAATGG
TGCTGGTGAA GCGTATCTTC CAGCAATCTA TAACAATCCT GAGGTTCAAC TCCTTGTACA GAAGAAATAC ATGACAAATT
TGTTTCACGA TAGTCTTGGA TTTGGTGCTG CTAAAATGAT ACGGTGAGAC TTTTTCTCTC AAATTTATTT TCCTCTTTTC
ACAAAAAGAT AATGTGAGAT TGCAGATATA TGGTATGTGT ATCTAAGTAT GATTTCTTGG ATTTTTTTTG TTTATGTTAA
CTATGCCATT TAGCCATTCT TTTCTTTGTC ATATAATTAA TAACTTGAGC ATTTGAAATG GTGATTGATA TAGTATTGTA
TTTGATGGAC ATGTGTTACT TGATTGACAG GAGAATTGTT GGTGTGGCGC ATGTTCAGGA TTTTGAATCC ATTGCTGATG
CTGCCAAACG GGCAACTTGT GAACGCCGAG CTCTTGAGTT AGCTAAGATG CTTCTCAAAG AAAGAAGAAA ATTTGAAGAC
ATTGCTGAAA TTATTTCAGC AATTCGGCAA TACTAACATC AGCTTTTGCT ACATCAATAA TACTTTAATG GATCATGTTT
TCCAACATGC CTTTTGGTTT TGTGTACCAC TATATACCTG TTTCCGAATT CACCAAAAAA ACATCATGTA CGAAAAAATT
ATTTTTAGGA GAGGTTTGGT GAGAGATTTT TATATTTTAT TCTCTATTTC AAGTTTATAT AGCACAAGAT AAAACAGTGA
ATTAAAACAA AATAATAGAA AAATATTTTC ACTTCTTA

>Vigan.08G046100.01
TTCTCAAAAC AAAATCACAG TGTATATGGG TTTAGGAGAA TCAAAATGAA ATTGGTGTGA AAAAAAAATC TCAGCTTCTA
GCGTGCTTCT TCCAAATAAA GAATAGTAAG ACGCACTTCA AAGATTCCAT CAATTTGGGA CTTGAGAGAG TACCATTGCT
CCACTTCCTC CTCGCCACCA TCGGCGGCCA CCATGGTTTT CTCGGAGTTC CGACCGCTCG ACGAGAAGAC TCTCATCGAA
TACATAAAGT CCGTTCCTGC TCTCTCCTCC AAACTCGCCA ACAGTTTCGA TGACTTGTCT GTTAAAGAAG TCGGAGATGG
CAATCTTAAC TTCGTGTACA TTCTTTCCAA CTCCAAAGGT TCTCTTGTCA TCAAACAGGC TCTGCCGTAC GTTCGTTGCA
TTGGGGAATC GTGGCCTATG ACAAAGGAGA GGGCTTATTT TGAGACGCTG GCACTGAAAG AAGAGGGTCG TTTGAGCCCT
GAGCATGTCC CTGAAGTATA TCACTTTGAT CGTACCATGT CTTTGATCGC CATGCGTTAC TTGGAGCCCC CGCATATAAT
CCTCAGAAAA GGGTTGATTG CAGGAATTGA ATACCCTCTT TTAGCTGAGC ATATGGCTGA TTTCATGGCA AGGACACTCT
TCTTCACGTC TCTGCTTTTC CGCTCTACTA CTGAGCACAA ACGAGACGTT GCCGAATTTT GTGGCAATGT GGAGCTATGC
AGGCTGACTG AGCAGGTCGT TTTCTCTGAT CCTTATAAAA TTTCCGAATA TAATCGTTGG ACTACGCCCT ATCTTGACCG
TGATGCTGAG GCTGTCCGGG AAGACAACCT GCTGAAGCTT GAAGTTGCTG AGCTGAAATC TATGTTCATC GAGAGGGCCC
AGGCACTATT ACATGGTGAT CTACACACTG GTTCTGTGAT GGTTACTGGT GAATCAACTC AAGTTATTGA TCCAGAATTT
GCATTTTATG GACCGATGGG TTTTGATGTT GGAGCATTCT TGGGAAACTT GATTTTGGCC TTCTTTTCTC AAGACGGACA
TGCTGATGAA ACAAATGATC GAAAGGCCTA TAAGGAGTGG ATTCTGAAGA CAATCGAAGA CACATGGAAC CTTTTCCATC
ACAAATTCAC TTCACTTTGG GATGAGCACA GTAATGGTGC TGGTGAAGCG TATCTTCCAG CAATCTATAA CAATCCTGAG
GTTCAACTCC TTGTACAGAA GAAATACATG ACAAATTTGT TTCACGATAG TCTTGGATTT GGTGCTGCTA AAATGATACG
GAGAATTGTT GGTGTGGCGC ATGTTCAGGA TTTTGAATCC ATTGCTGATG CTGCCAAACG GGCAACTTGT GAACGCCGAG
CTCTTGAGTT AGCTAAGATG CTTCTCAAAG AAAGAAGAAA ATTTGAAGAC ATTGCTGAAA TTATTTCAGC AATTCGGCAA
TACTAACATC AGCTTTTGCT ACATCAATAA TACTTTAATG GATCATGTTT TCCAACATGC CTTTTGGTTT TGTGTACCAC
TATATACCTG TTTCCGAATT CACCAAAAAA ACATCATGTA CGAAAAAATT ATTTTTAGGA GAGGTTTGGT GAGAGATTTT
TATATTTTAT TCTCTATTTC AAGTTTATAT AGCACAAGAT AAAACAGTGA ATTAAAACAA AATAATAGAA AAATATTTTC
ACTTCTTA

>Vigan.08G046100.01
ATGGTTTTCT CGGAGTTCCG ACCGCTCGAC GAGAAGACTC TCATCGAATA CATAAAGTCC GTTCCTGCTC TCTCCTCCAA
ACTCGCCAAC AGTTTCGATG ACTTGTCTGT TAAAGAAGTC GGAGATGGCA ATCTTAACTT CGTGTACATT CTTTCCAACT
CCAAAGGTTC TCTTGTCATC AAACAGGCTC TGCCGTACGT TCGTTGCATT GGGGAATCGT GGCCTATGAC AAAGGAGAGG
GCTTATTTTG AGACGCTGGC ACTGAAAGAA GAGGGTCGTT TGAGCCCTGA GCATGTCCCT GAAGTATATC ACTTTGATCG
TACCATGTCT TTGATCGCCA TGCGTTACTT GGAGCCCCCG CATATAATCC TCAGAAAAGG GTTGATTGCA GGAATTGAAT
ACCCTCTTTT AGCTGAGCAT ATGGCTGATT TCATGGCAAG GACACTCTTC TTCACGTCTC TGCTTTTCCG CTCTACTACT
GAGCACAAAC GAGACGTTGC CGAATTTTGT GGCAATGTGG AGCTATGCAG GCTGACTGAG CAGGTCGTTT TCTCTGATCC
TTATAAAATT TCCGAATATA ATCGTTGGAC TACGCCCTAT CTTGACCGTG ATGCTGAGGC TGTCCGGGAA GACAACCTGC
TGAAGCTTGA AGTTGCTGAG CTGAAATCTA TGTTCATCGA GAGGGCCCAG GCACTATTAC ATGGTGATCT ACACACTGGT
TCTGTGATGG TTACTGGTGA ATCAACTCAA GTTATTGATC CAGAATTTGC ATTTTATGGA CCGATGGGTT TTGATGTTGG
AGCATTCTTG GGAAACTTGA TTTTGGCCTT CTTTTCTCAA GACGGACATG CTGATGAAAC AAATGATCGA AAGGCCTATA
AGGAGTGGAT TCTGAAGACA ATCGAAGACA CATGGAACCT TTTCCATCAC AAATTCACTT CACTTTGGGA TGAGCACAGT
AATGGTGCTG GTGAAGCGTA TCTTCCAGCA ATCTATAACA ATCCTGAGGT TCAACTCCTT GTACAGAAGA AATACATGAC
AAATTTGTTT CACGATAGTC TTGGATTTGG TGCTGCTAAA ATGATACGGA GAATTGTTGG TGTGGCGCAT GTTCAGGATT
TTGAATCCAT TGCTGATGCT GCCAAACGGG CAACTTGTGA ACGCCGAGCT CTTGAGTTAG CTAAGATGCT TCTCAAAGAA
AGAAGAAAAT TTGAAGACAT TGCTGAAATT ATTTCAGCAA TTCGGCAATA CTAA

>Vigan.08G046100.01
MVFSEFRPLD EKTLIEYIKS VPALSSKLAN SFDDLSVKEV GDGNLNFVYI LSNSKGSLVI KQALPYVRCI GESWPMTKER
AYFETLALKE EGRLSPEHVP EVYHFDRTMS LIAMRYLEPP HIILRKGLIA GIEYPLLAEH MADFMARTLF FTSLLFRSTT
EHKRDVAEFC GNVELCRLTE QVVFSDPYKI SEYNRWTTPY LDRDAEAVRE DNLLKLEVAE LKSMFIERAQ ALLHGDLHTG
SVMVTGESTQ VIDPEFAFYG PMGFDVGAFL GNLILAFFSQ DGHADETNDR KAYKEWILKT IEDTWNLFHH KFTSLWDEHS
NGAGEAYLPA IYNNPEVQLL VQKKYMTNLF HDSLGFGAAK MIRRIVGVAH VQDFESIADA AKRATCERRA LELAKMLLKE
RRKFEDIAEI ISAIRQY*