GBrowse Details

Vigan.08G045100.01

Basic Information:
Name: Vigan.08G045100.01
Multiple alignment
Variant Information
Position: Chr08:3572062..3574868 (+ strand)
Length: 2807
Functional Information:
Description: Similar to Uncharacterized protein. [I1LEJ5, Glycine max]
InterPro: Protein of unknown function DUF1168 (IPR009548)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:42.36,33.91,18.75,19.40,19.43,14.31,10.81,18.16
Arabidopsis thaliana homolog: AT2G15270.1
Automatic updates:
Name: NM_001253150 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PRKR-interacting protein 1-like (LOC100805970), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3572062..3572331 (+ strand)
Length: 270
Type: five_prime_UTR
Position: Chr08:3572332..3572574 (+ strand)
Length: 243
Type: CDS
Position: Chr08:3574318..3574593 (+ strand)
Length: 276
Type: CDS
Position: Chr08:3574594..3574868 (+ strand)
Length: 275
Type: three_prime_UTR

>Vigan.08G045100.01 class=Sequence position=Chr08:3572062..3574868 (+ strand)
AAAGAACATC TATAAATATT GAAAATGGTT ACTATTTAAC GGTAGTTTTC GAATGAAATC GTGAAATCCC CCGAATTCAT
GAGGGGATTG GGATTTTCTT TGAGAGATAA ACCGACACAA CAAATGTTAT TTCCTCTTTC CCTTGTAATT CTAAGGGTAT
GAAGAACATC TGTTTCGAAC TAGGATCTTA AAATCACTAA ACTAACCTTG TCTGCAGAAT TAGGGTTCGG GTCTAAAGTG
AAAATTTAGG GTTTTTGTAA ATCCCATAAA ATGTCGACGG GCAAACCCAG AGATGCTGAT TTTCAGATTG TCGCAGCGCC
AGGAAATTCG AAACCGCCCC TCCCGCCAAC AGCAGCAGCA TCGAGTGCGC TAGTGGAGTA TACTCCTGTC GTTTTCAAGG
AGGAAGAGGA GGACCTAGAA GTCAAGCTGC GACGTATTAT CGACAATGTT CCCGTTCGTG TTAGCAACAC TTCTGGTAGT
TCCGCCGGTT CAGGATCCGG CGACTTCCAC CAGGTACAAG TGCTTGTCCT TTGTCTTGAA TAAAAGTTAT CTTTTGTGTT
TGAGGTCGCT CCAGACATAA AAATTGCTCG CTTTTAATAA TGGAGTTACA GTATTTTTAC TTTTTTTAAA TGAGGATATA
GTTTTACCTG CCTAAATTTT CATTCGTTTG TTTGTTTTTT TTTCTATTCA AACGAGATAG CAAACGCAAT TTGAAGTGAT
AAAATAACCC TATTGAATGT TGTTTGGCTC TTTGATCACT AAATTGGGGT TACCCATATG TTTTTAAAAT ATGATAACAC
GTTGTTGGAA ATACTCTGTA TTTAGTGGAA CTGTAGAAGT TCTATGAGAT AATGGTGCAC TCGAGGTGTT TTTCTTGGTT
AACAAGTGCC GGGTTGAGAT GACAGGGTTT AAATTATTTG AAATAAAGCT GGCCTTATGA CTAAGGATTC TCAAAGAAAG
CTGTGCTTTT GAGTTTTTAA CGATATGCTA ATCTCCTATT TGGGGATTCA ACTTAGAAAA CTTATTTACT CGTATTATAG
AGTAAAATAC GGGTCATGTA GAAGTTGGAT GTGAACTGGT TGGAAAAACC ATCATACTTC AATGTTGTGA GATTTATTTA
CTCATGGAAG AGTTCTGGAT TTACCCACTA CAACAATAAA TTGATTCTGT ATTTAACAGT CTAATGCATA AACTTACCAG
AAATAGGACG ATGAAAGGAA TACAACTTGC TCATTTTATT TTTTTAAAAG CTGTCTTGTA ATTGATTTTC ATTAATACAG
TTGGCGAACT CTCGAGGGTT AATCCATAGA CTCATGAGTT TATGGTTCCA GTACGAAATA ATAGTCAACT TGTTGTTCAA
CCTTTTTGAC GATAAACACA AGCAAGGATA TTAAACTGGT GTAAAATTGC GTAAAGTTGA TTTGGGAAAC AAGTTCATGA
ATTTGAAATA AAATGTAATT TTTGTCCCTT GGTGACAGTG TTTTACTAGA GTTAAATTTA TTTGAAGGAA TTATCTCCTT
TTTGAAATGT TTTCGCTTTA GAAACTTTTG TTTTTATGAA ATTCTATATG ATTTGGTTCA TTTATATAGT TTGATCATAT
TTAGTTGGTA CTAATGTACT ACACATTTTA CTGTTATGGT TTGCTACATT GTTTATGGAG TTGAAATGTT TGCTGTGTTA
AGAATATTAT GTTATGCGCA TATGTTGGTA ATGGATTTTT TCAATATATA TTTCTATATT AAGTTTTTTC TTGCAAGCTT
ACATATGCTG CAGAAGTTTT TGTCAACTTG ATTACCTTGT CCGTTAATAT TAAGGTATTC TTTCCTGCAC TTGATGTGTC
TTGCCCTGAG TTATGCTCTT AAGGCTTCTG TGTGTGCAAC ATCTTTATAA TTTGAGTGAT ATTAATAATC TTTCCTGCGT
TCTGAAGTGC TTAGCCACAC ACTGGGTTTA TCCAAGTAGT GATCGCCTAT TTTAGATCAG CTTCTGCATG TGTGAGTGAG
CTTTTCGACG ATCAAAGTCA AGTTCTGTTG AGTTCACAAG TGCTTCATGC AGAAGCTTTT AAAAGGTTGT GGTTCGTTAA
TTGGTTTCAA GCTATGTGAG GAGTTTGATT TATTTTAGTT TCTTCTCCTT TGTTAAGAAG TGAGGAGTTA AACTGGCTTG
ATATCTGGGT TTATTCTGTG TGTCAATTAT GGGTAAGGTG ATGGATATGT TGATCTGATT GTTATTCTTA TGTGCTTCCA
ACTTTGTTTC CGACAGTATC GGCAGATGAG ACGCAAGGAG CAAGATCGTC TTGCTAGAAT GGAAGTCGAT TACCAGAAGA
GAAAAGAGTT GGCAGAATTT AATTTAAGAA GGGAGGAAAG ATTAAAAGCA GCAGAGGAAA GGACAGCAAA GAAGCGAGCA
AAGCGTCAAA AGAAGAAGCA AAGGAAAAAG GAGAAAAAGA TAAAATTAAA TGCCGAAGGA GAACAGCAGC GAGAGAAACA
AGAGTCCTCA AGTGATGGAG ACACGGACAA CAGTGAGGAG CCAGCACCGT AAAACAAGCT TTGGTGGTAG GTGGTAATAT
CTGGCTTAGT TAAAACACAG GCATGACTCT GGGTTTTCAT TATTTGTATC CCAAAAGTGA TTTATGTGGT ACTTTGTTCG
AAAGGGATTT AAGCAACAAA ATTGATGCAG TGAGAAAACA ATTCTTACAA GCTTTTCTAC TAAAAAGAAT CCATCTACTC
ATTGAATTTA ATGATGTAGT ATAAAAGAAA ATGGTAACAC GAAATGTTAC ACAAATCAAC TTACATCCTA TGCGTAAAAT
ATCCCGA

>Vigan.08G045100.01
AAAGAACATC TATAAATATT GAAAATGGTT ACTATTTAAC GGTAGTTTTC GAATGAAATC GTGAAATCCC CCGAATTCAT
GAGGGGATTG GGATTTTCTT TGAGAGATAA ACCGACACAA CAAATGTTAT TTCCTCTTTC CCTTGTAATT CTAAGGGTAT
GAAGAACATC TGTTTCGAAC TAGGATCTTA AAATCACTAA ACTAACCTTG TCTGCAGAAT TAGGGTTCGG GTCTAAAGTG
AAAATTTAGG GTTTTTGTAA ATCCCATAAA ATGTCGACGG GCAAACCCAG AGATGCTGAT TTTCAGATTG TCGCAGCGCC
AGGAAATTCG AAACCGCCCC TCCCGCCAAC AGCAGCAGCA TCGAGTGCGC TAGTGGAGTA TACTCCTGTC GTTTTCAAGG
AGGAAGAGGA GGACCTAGAA GTCAAGCTGC GACGTATTAT CGACAATGTT CCCGTTCGTG TTAGCAACAC TTCTGGTAGT
TCCGCCGGTT CAGGATCCGG CGACTTCCAC CAGTATCGGC AGATGAGACG CAAGGAGCAA GATCGTCTTG CTAGAATGGA
AGTCGATTAC CAGAAGAGAA AAGAGTTGGC AGAATTTAAT TTAAGAAGGG AGGAAAGATT AAAAGCAGCA GAGGAAAGGA
CAGCAAAGAA GCGAGCAAAG CGTCAAAAGA AGAAGCAAAG GAAAAAGGAG AAAAAGATAA AATTAAATGC CGAAGGAGAA
CAGCAGCGAG AGAAACAAGA GTCCTCAAGT GATGGAGACA CGGACAACAG TGAGGAGCCA GCACCGTAAA ACAAGCTTTG
GTGGTAGGTG GTAATATCTG GCTTAGTTAA AACACAGGCA TGACTCTGGG TTTTCATTAT TTGTATCCCA AAAGTGATTT
ATGTGGTACT TTGTTCGAAA GGGATTTAAG CAACAAAATT GATGCAGTGA GAAAACAATT CTTACAAGCT TTTCTACTAA
AAAGAATCCA TCTACTCATT GAATTTAATG ATGTAGTATA AAAGAAAATG GTAACACGAA ATGTTACACA AATCAACTTA
CATCCTATGC GTAAAATATC CCGA

>Vigan.08G045100.01
ATGTCGACGG GCAAACCCAG AGATGCTGAT TTTCAGATTG TCGCAGCGCC AGGAAATTCG AAACCGCCCC TCCCGCCAAC
AGCAGCAGCA TCGAGTGCGC TAGTGGAGTA TACTCCTGTC GTTTTCAAGG AGGAAGAGGA GGACCTAGAA GTCAAGCTGC
GACGTATTAT CGACAATGTT CCCGTTCGTG TTAGCAACAC TTCTGGTAGT TCCGCCGGTT CAGGATCCGG CGACTTCCAC
CAGTATCGGC AGATGAGACG CAAGGAGCAA GATCGTCTTG CTAGAATGGA AGTCGATTAC CAGAAGAGAA AAGAGTTGGC
AGAATTTAAT TTAAGAAGGG AGGAAAGATT AAAAGCAGCA GAGGAAAGGA CAGCAAAGAA GCGAGCAAAG CGTCAAAAGA
AGAAGCAAAG GAAAAAGGAG AAAAAGATAA AATTAAATGC CGAAGGAGAA CAGCAGCGAG AGAAACAAGA GTCCTCAAGT
GATGGAGACA CGGACAACAG TGAGGAGCCA GCACCGTAA

>Vigan.08G045100.01
MSTGKPRDAD FQIVAAPGNS KPPLPPTAAA SSALVEYTPV VFKEEEEDLE VKLRRIIDNV PVRVSNTSGS SAGSGSGDFH
QYRQMRRKEQ DRLARMEVDY QKRKELAEFN LRREERLKAA EERTAKKRAK RQKKKQRKKE KKIKLNAEGE QQREKQESSS
DGDTDNSEEP AP*