GBrowse Details

Vigan.08G043500.01

Basic Information:
Name: Vigan.08G043500.01
Multiple alignment
Variant Information
Position: Chr08:3472566..3475229 (- strand)
Length: 2664
Functional Information:
Description: Similar to Uncharacterized protein. [I1NFW5, Glycine max]
InterPro: Chlorophyll a/b binding protein domain (IPR023329)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.34,6.69,25.28,160.11,7.91,33.17,5.47,35.42
Arabidopsis thaliana homolog: AT4G34190.1
Automatic updates:
Name: NM_001248240 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306702 (LOC100306702), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3472566..3473144 (- strand)
Length: 579
Type: three_prime_UTR
Position: Chr08:3473145..3473249 (- strand)
Length: 105
Type: CDS
Position: Chr08:3473790..3473965 (- strand)
Length: 176
Type: CDS
Position: Chr08:3474922..3475023 (- strand)
Length: 102
Type: CDS
Position: Chr08:3475108..3475153 (- strand)
Length: 46
Type: CDS
Position: Chr08:3475154..3475229 (- strand)
Length: 76
Type: five_prime_UTR

>Vigan.08G043500.01 class=Sequence position=Chr08:3472566..3475229 (- strand)
CTGACACATC TTCAAACAAA AGTAAGAGAT AAAATCCGTA GGCACCGCAC AACTGAGATA GTTGCAATTC ACCACCATGG
CACTTGTTCA ACCCTCTGCT TCTCTTACTC TCTCCGTTCG TGGTAATCTC TCTCTCGTCA CTTTCTCCTT TGATCAGAAG
CAGTATCAAG TTCAATTTTT TAACACTCGG TTAAAATGTG TCGCAGATGC ATGTGTTTTC ACTGCACCAA AATACCCTCC
CACCGCTCAC TTTCCTCACA GGAATTTGAT TACAACTCGA GCATCATTCA TCGCTGGTTC CCCACTCTGT AAGTGTTCTA
CTTCCCGTGG TTTCTCTTTA TAATATCTGC TTACTTTATA ATGTGAAAAC TGCATTCAAT TATGCCCGTG TGACTGAAAC
CCTTTACGAT AATTACTTCC CTTGACTTCA AAATTGAATG CTCCCCGGTA ACTTGGAAAT CTTTGCTTCT TCCTTCTTCC
TTTTTTCAGA TGTTATTCCA ACCAAAGGAT CTTTTTTCTT TTTTTTGCAT CAGTTTGTTG AGATTCAGGA TAAATTAGAA
GTCTTTGTGG GGTAGTCTAT CTTAGAATTT CATAGTATGC GGGCTGCGAA TTGAACGAAA ACATGCTCAT AAAATTTTGC
AGTTGGAGGG TTACTATATC CCACTGCTTC CTTGGTTAAT ACTTAACATA TTTTTTGGAC CCTAGACTTG ATTTTAGCCG
TTGAGTTCTA CTGCGAAATC TGGTATTTTC TATTTTTTGA AGATCGCATT AGTTAAGCCT GTGAAATAGC TCATTTTAAG
CAACAGTGGA AGATGGTAAT GCTAATGCAC AAATGCTATC TGAAACTATT GCTTTTGATT TTTATTTTTT ATTTGTTATA
AACTTGCAAC ATTGTTTCAC ATCTGTAAAG CTTCTTATTT TAGATAGACT GTATGAGTTA AGCCTGTGAA CTAGCTTATT
TGAAGCAGCT GTAAAAGATG GTAGTGGTAC AAATGCTATG TGAAACTGTT GATGCATTCG TTGAGGATTG TTGCCTTTAT
TTTCCTTTTG GTTTTGCCAC TTTCTTATGG TCAGTTCTTA AATTGTCCTA AAACTCTTTT AAAACTGGAA GCTTTTTGGA
TGTGTAGTTT CCTCCATGTG TTTATGACGC AAATTATGTT ATTTTCTTCC TTTAATGGGT TTGGGGAGAG AATGAAACTA
AAGTAACGTT GAAATAAAAT AAGGTCCCTA TTACATGGCT AAGTATTGTT TGACTTGCAT CTAGTGATTC GAAAGAATCA
TGGAAGGAAG CCCACATGCA AAGCAATGCC TGTTTCGATA CGATGTGAGC AAAGCACCCA GCAAGGGAAC AGTTTGGATG
TGTGGCTAGG CCGGCTAGCC ATGGTTGGCT TTGCAGTAGC CATCACTGTT GAAATTGCCA CTGGGAAGGG ACTCCTAGAG
GTATGATACA GTATACTCTA TGTAGTAACT GGTGGATTAT TACTTCAGGC ATGACTTGGA CCGCTAGCAC TTGTCTACAT
ATTTGAGTCA TGATCCAATT TATGATTTTC ATCAAATGAT TAACCCTTTT TATAACCTCC ACACCTGTCA AAAGTTTACT
TTGATGTTCT TACTGTAATA TGCCTAATTT TTATCTCTCT TTTTCTCTAA ATTTATTGTA TTTATGACAT CCAGTAAATT
CAGCTGAAGT GTTTGGAAAT AAATTAATAA TCTAATGTTG ACAACAGTTC ATGATGTTTT AAAACATTCA AGCTCACAAT
CATGGTTGTG AGTTCACATA CATTTCTGTG AATCTTAAAC GAAATAGAAT TATTTAATGT TTTGAGCTTC AAAGTGAATG
CAACTCACTG AAAACTTACA TAAGTTTACA GAGCTCAATG CTTCTTACTC CTCTTTCTAC CTCTCCACCC ATTCTAAAAT
AATATTATGA CACATCTGTT GCAAAAAGAA TAAAAGTATT TTTGTACCTT GATTATGCAG AACTTTGGAC TAGCAACGCC
CCTTCCTACA GTTGCCCTCG CAGTAACAGC ACTTGTGGGT GTCTTGACAG CAGTTTTTAT CTTCCAGTCA GCCTCGAAGA
ATTGATCACA TATTTAGACT CGTCGTACTT GTTGTAAATT ATGAAGCTCA GAGGTTTCGT TTGTTGGAGA TAAAATTTCA
TCATTCTTTT TCTGTATTAT TTGATGAAAA AATTAATTGG CATTGAAGCA TGAAAAGTCA CAAATGTCAA AGTATGACAA
TCCACTTAGA TGTGTCTATC AGATGAACTT TCTCACCATA CATATAGATC AAAGTATAAA AATTCTCTTT CTTCAGGTCC
ATTTTGCTTG CACAGTTCCA TCGGTAAGAA CATATCCCCG ACTGGCAAAG AGGTTCTTAC ACGAGTGTGA ATGGAGGATT
TAGTAGGTCT TCATTCATCT CAGGGATGAA AACAATTCCG TAGAACCTAA AAGTGGGGAA AACAAAGCTG TCAAATACGA
TATCTGACTT ATAAAAGAGG AGTGGGAAAG ATAGCAGGGT CTCCTTTAGA CTTCCCTGAC ATTGAATACC AGTGATAATG
TGTTCTGTGA TGGATCAGGT TTTAATTTGT TGAGTAAAGA AAATAGAAAA GGAGCATTGA ATTGATTGGC TATTCAACAA
TTTTTCGAAC AAGGAAGCCT GACA

>Vigan.08G043500.01
CTGACACATC TTCAAACAAA AGTAAGAGAT AAAATCCGTA GGCACCGCAC AACTGAGATA GTTGCAATTC ACCACCATGG
CACTTGTTCA ACCCTCTGCT TCTCTTACTC TCTCCGTTCG TGATGCATGT GTTTTCACTG CACCAAAATA CCCTCCCACC
GCTCACTTTC CTCACAGGAA TTTGATTACA ACTCGAGCAT CATTCATCGC TGGTTCCCCA CTCTTGATTC GAAAGAATCA
TGGAAGGAAG CCCACATGCA AAGCAATGCC TGTTTCGATA CGATGTGAGC AAAGCACCCA GCAAGGGAAC AGTTTGGATG
TGTGGCTAGG CCGGCTAGCC ATGGTTGGCT TTGCAGTAGC CATCACTGTT GAAATTGCCA CTGGGAAGGG ACTCCTAGAG
AACTTTGGAC TAGCAACGCC CCTTCCTACA GTTGCCCTCG CAGTAACAGC ACTTGTGGGT GTCTTGACAG CAGTTTTTAT
CTTCCAGTCA GCCTCGAAGA ATTGATCACA TATTTAGACT CGTCGTACTT GTTGTAAATT ATGAAGCTCA GAGGTTTCGT
TTGTTGGAGA TAAAATTTCA TCATTCTTTT TCTGTATTAT TTGATGAAAA AATTAATTGG CATTGAAGCA TGAAAAGTCA
CAAATGTCAA AGTATGACAA TCCACTTAGA TGTGTCTATC AGATGAACTT TCTCACCATA CATATAGATC AAAGTATAAA
AATTCTCTTT CTTCAGGTCC ATTTTGCTTG CACAGTTCCA TCGGTAAGAA CATATCCCCG ACTGGCAAAG AGGTTCTTAC
ACGAGTGTGA ATGGAGGATT TAGTAGGTCT TCATTCATCT CAGGGATGAA AACAATTCCG TAGAACCTAA AAGTGGGGAA
AACAAAGCTG TCAAATACGA TATCTGACTT ATAAAAGAGG AGTGGGAAAG ATAGCAGGGT CTCCTTTAGA CTTCCCTGAC
ATTGAATACC AGTGATAATG TGTTCTGTGA TGGATCAGGT TTTAATTTGT TGAGTAAAGA AAATAGAAAA GGAGCATTGA
ATTGATTGGC TATTCAACAA TTTTTCGAAC AAGGAAGCCT GACA

>Vigan.08G043500.01
ATGGCACTTG TTCAACCCTC TGCTTCTCTT ACTCTCTCCG TTCGTGATGC ATGTGTTTTC ACTGCACCAA AATACCCTCC
CACCGCTCAC TTTCCTCACA GGAATTTGAT TACAACTCGA GCATCATTCA TCGCTGGTTC CCCACTCTTG ATTCGAAAGA
ATCATGGAAG GAAGCCCACA TGCAAAGCAA TGCCTGTTTC GATACGATGT GAGCAAAGCA CCCAGCAAGG GAACAGTTTG
GATGTGTGGC TAGGCCGGCT AGCCATGGTT GGCTTTGCAG TAGCCATCAC TGTTGAAATT GCCACTGGGA AGGGACTCCT
AGAGAACTTT GGACTAGCAA CGCCCCTTCC TACAGTTGCC CTCGCAGTAA CAGCACTTGT GGGTGTCTTG ACAGCAGTTT
TTATCTTCCA GTCAGCCTCG AAGAATTGA

>Vigan.08G043500.01
MALVQPSASL TLSVRDACVF TAPKYPPTAH FPHRNLITTR ASFIAGSPLL IRKNHGRKPT CKAMPVSIRC EQSTQQGNSL
DVWLGRLAMV GFAVAITVEI ATGKGLLENF GLATPLPTVA LAVTALVGVL TAVFIFQSAS KN*