GBrowse Details

Vigan.08G042100.01

Basic Information:
Name: Vigan.08G042100.01
Multiple alignment
Variant Information
Position: Chr08:3362672..3364924 (+ strand)
Length: 2253
Functional Information:
Description: Similar to mediator of RNA polymerase II transcription subunit 21-like isoform X2. [XP_004515421.1, Cicer arietinum]
InterPro: Mediator complex, subunit Med21 (IPR021384)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:30.26,15.27,15.86,21.55,12.61,19.78,14.72,13.95
Arabidopsis thaliana homolog: AT4G04780.1
Automatic updates:
Name: NM_001248719 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306480 (LOC100306480), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3362672..3362878 (+ strand)
Length: 207
Type: CDS
Position: Chr08:3364268..3364345 (+ strand)
Length: 78
Type: CDS
Position: Chr08:3364462..3364513 (+ strand)
Length: 52
Type: CDS
Position: Chr08:3364842..3364924 (+ strand)
Length: 83
Type: CDS

>Vigan.08G042100.01 class=Sequence position=Chr08:3362672..3364924 (+ strand)
ATGGATATAA TCTCCCAATT ACAAGAACAA GTTAATCTGA TTGCACATTT AGCTTTCAAT ACCATTGGGA CATTGCAAAG
GGATGCCCCT CCTAATCGAC TGTCGCCAAA TTATCCTGAA CCACCAGCAC ATCCTACAGA AGAGGGGACA AATTTTTCAG
AGCAGCCAAA GTTGATGAGT TCTACTTTAG TGAAGGCTGC CAAGCAGGTA CATAGCATCT TAGTCAATAG TGAAAGGGAG
GTTAGTATAT CATACTTAGT TGTTAATATT GTCAAAATCG GGAGTAAACT CCAGTCAGTC ATCGGGCCTT CGACTGGCAC
TCACTCTGCT GTTCTGTTCT CTCTTTGCTT TTTGCTGTTC TGCTTTCTCC ATGGTTCTAT ATTATATAAT TTTTCATAGG
TCTCGGGTAA TTCAGTTTTA TTCTTTATCG TTTTTAAGAA ATTCATTATA ATGGGAATTC TCTGCATTAC AGTCCCTTTT
CGCCATTTTT TATTTAGCTG TCTTAAAAGC CCTGACCCGA GGGTTTGGTC TCTTGACACA TCAGGTTCAT TTTCTTGCAA
ATCTTGCTTC TGTTTTATCA TTATTTCCAA AGTCCCGAAA ATGGTTCATT TGTTTTTTAT TAGTGGGTTT AGAAATCAGT
TGCTCCTACA AAGTCTAAAT CCTTTGTTTG AACTGATGTT CTAAACTGGA TTACTGCCAG TTATTTAATT CAAATTTAAA
GACCTCTAAC TGCATTTTCT GCTGACTATT GTGTGCCATG CCAATTGAGT TTTGAACTTC TCTTGCAGTT TCCCTTCTTT
TGGAATAAAT TGTTTGGTGT TTTTGGTGAA CATTTGGTTT TTCCAGAGGG GCTTCAAAAG TTCCTGTGTT AATTTTAGAG
GTTTAGAGTG TGATAGAGAT GTTAAAAGGC TTTGTCGTTC TCAATTTGGG ATTGTGTGGT GTACATGGTT GGAAAGATGT
CAGATTTTTC TTTTTTCAAA TGATGCCTCG GGTTTTTATT TGAGATCATA AAATAGTTCC CTTAGCTTCT TCGTAGTGCC
TGCAAATGGT TTTTCTAGGG GATATCTTTG GTAGAGATGT ACATGGATAT TGGTACACCG TGTTACACTT CACGTTCTTA
GTTTTTGGGG CTTTTTCTTT CATTCTTGAT TTAATTGTTG AAATTTCTTG TTCCAGTGCA TTGAATCTAT CCTTTATAAT
TTCCATTAAC AAAAGAAGAA GGTCCCCAAC ATATCTTAAC TTTTTGAGTA TTTTTTCTGA AATATATTAT ACAGATCCTA
CTAAATAAAC ATATTCTAAG ACTGGCATGG GTGCATATGG TATTATTTCT CAAAGAAAAA TGTTCAAGTT ACCTTTGGAT
AAAAACAGAT GTGTATCCAG TATTCCAATT GTGTTTGTTT GAGGATAACA TGCACAATGC TTGCTTGGAA ATTGTAAACC
AACATTGGAT GTATACATAG AACCAATTTA ACCAATTGGA CTCAGGCTTA TATCTTTCTT ATTTTGTGAT GCTGAACTTC
ATTATTTATT GAGCCTTTTG TCTTCATTAT TTCATCACTC ATAATTTATC CATGAAATAT ATGGGTTTTT CTGTAGTTTG
ATGCATTAGT TGCGGCTCTT CCGATATCCG AGTCAGGTGA AGAAGCACAG CTTAAGAGGA TAACAGAACT ACAAGTGTGT
ATCTCACACC TCACTTTTTA TGTGATTGAC TGGTGAACTT AATAACAAGT AATCTAATTG TAACAAACAG TGTTTATGCT
TTTACATTGT TTCTGCTTTT TGCCTTCCAG GCTGAAAATG ATGCAATAGG CCAAGAACTT CAAAAGCAGT TGGAAGCTGC
AGGTTGTCCA ATTCTCTCTT TATTTCTGAA CTCTGAGCTT TATTTCTTGA TTTCTCTGTA TAACAAATGA AACTGTAAAT
TCATGTTAGA TAGCCAAACT GAGTTTTAGA ATCTCCAAAA GAAAAATCAT ACATGCAAAA GTAGTTTCTT CAAGCAATAT
TAAGCATTTT ATGGGCTATA CAGCTGTAGT AGTTCGGTGA AGGCTGGTAT CCATCTGTAA TGTACATTCA CTTATAATTC
TGACTGAAAA TTCAGCTGTA ATGTGCTTTG GACTTTAGGA TGTCTAGAGA AGGTATGAGT CTAACTAACA CTTTGTGTTC
TTGATGTCAG AGAAGGAATT GAATCAAGTT CAAGAACTGT TTAGGCAAGC ATCAGATAAT TGTTTGAACT TGAAGAAACC
AGATGACAAT TAG

>Vigan.08G042100.01
ATGGATATAA TCTCCCAATT ACAAGAACAA GTTAATCTGA TTGCACATTT AGCTTTCAAT ACCATTGGGA CATTGCAAAG
GGATGCCCCT CCTAATCGAC TGTCGCCAAA TTATCCTGAA CCACCAGCAC ATCCTACAGA AGAGGGGACA AATTTTTCAG
AGCAGCCAAA GTTGATGAGT TCTACTTTAG TGAAGGCTGC CAAGCAGTTT GATGCATTAG TTGCGGCTCT TCCGATATCC
GAGTCAGGTG AAGAAGCACA GCTTAAGAGG ATAACAGAAC TACAAGCTGA AAATGATGCA ATAGGCCAAG AACTTCAAAA
GCAGTTGGAA GCTGCAGAGA AGGAATTGAA TCAAGTTCAA GAACTGTTTA GGCAAGCATC AGATAATTGT TTGAACTTGA
AGAAACCAGA TGACAATTAG 

>Vigan.08G042100.01
ATGGATATAA TCTCCCAATT ACAAGAACAA GTTAATCTGA TTGCACATTT AGCTTTCAAT ACCATTGGGA CATTGCAAAG
GGATGCCCCT CCTAATCGAC TGTCGCCAAA TTATCCTGAA CCACCAGCAC ATCCTACAGA AGAGGGGACA AATTTTTCAG
AGCAGCCAAA GTTGATGAGT TCTACTTTAG TGAAGGCTGC CAAGCAGTTT GATGCATTAG TTGCGGCTCT TCCGATATCC
GAGTCAGGTG AAGAAGCACA GCTTAAGAGG ATAACAGAAC TACAAGCTGA AAATGATGCA ATAGGCCAAG AACTTCAAAA
GCAGTTGGAA GCTGCAGAGA AGGAATTGAA TCAAGTTCAA GAACTGTTTA GGCAAGCATC AGATAATTGT TTGAACTTGA
AGAAACCAGA TGACAATTAG 

>Vigan.08G042100.01
MDIISQLQEQ VNLIAHLAFN TIGTLQRDAP PNRLSPNYPE PPAHPTEEGT NFSEQPKLMS STLVKAAKQF DALVAALPIS
ESGEEAQLKR ITELQAENDA IGQELQKQLE AAEKELNQVQ ELFRQASDNC LNLKKPDDN*