GBrowse Details

Vigan.08G034200.01

Basic Information:
Name: Vigan.08G034200.01
Multiple alignment
Variant Information
Position: Chr08:2781578..2783526 (+ strand)
Length: 1949
Functional Information:
Description: Similar to Reticulon-like protein. [V7BAP3, Phaseolus vulgaris]
InterPro: Reticulon (IPR003388)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.02,1.63,7.35,1.67,0.73,2.35,2.72,5.50
Automatic updates:
Name: NM_001251363 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306402 (LOC100306402), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:2781578..2781916 (+ strand)
Length: 339
Type: five_prime_UTR
Position: Chr08:2781917..2782004 (+ strand)
Length: 88
Type: CDS
Position: Chr08:2782541..2782721 (+ strand)
Length: 181
Type: CDS
Position: Chr08:2782828..2782957 (+ strand)
Length: 130
Type: CDS
Position: Chr08:2783038..2783107 (+ strand)
Length: 70
Type: CDS
Position: Chr08:2783217..2783386 (+ strand)
Length: 170
Type: CDS
Position: Chr08:2783387..2783526 (+ strand)
Length: 140
Type: three_prime_UTR

>Vigan.08G034200.01 class=Sequence position=Chr08:2781578..2783526 (+ strand)
CCGTCCCTCT CATGTGTAGT TGTATAATAT TCCCACGAAA AGTAGTAAGA AAAAACAACA ACATAGGATT AGACACGGTC
GAGGGTAAAC GTGACAGACA CTAACAATGT ATCCTAAGTC ATGTGTGGGC ACGAGAAAAT GAAACTTGAA AAGCATGCCA
AAGCCATACC TTTCCTCTCA GGAACGAGTT CATCAAATTT CTTGGTTACA AAGGTTAGAA CCACAATACA TCACATATAA
GTTGCTACCA CGAAACATGA ATCACAATAG TGCTACAAAC TTACCTCACC AGAATCAACA AACACAACCA ATACATTTTC
AATCATTCTA TTCTTAACTA TGCCAATCCG TTCTCGTGAG CCTGCACAAA GGCCAGGTTT CTTCCACCGA CAGAGACCAC
TCCATGCACT TCTTGGCGGA GGAAAGCGTA AGATATTTTT TACAAAGTTC ACCTTTTTCT TATCAAAGTT TTAAGAAAAA
AATCTTATCT TTTTAATATT GATCGTAAGT ATTTAAAGAC ATAAGTTTTT GTTACAAAAA TAAAAAATAT CCATTGCACT
TTTACATTTT TAATGCACAA CTACTTTTCT TTAATAAAAG CTCCTTACTT TTAAAACCCA ACTTTCTCGA AATATATATT
TCCCAACAAG TTCTATAGAA AAAGTTTAGA CAAGGATTCA CGTATTAAAT TCATCCCAAT TTTTACCCCT CAAAAGTAAA
GTAAAAGAAA TATTTTCTAC GATTAAGATT TTGTCCAACA GCGAAAGAAA AGATGTCACA AACCCTAAGA TGTCGAGTTA
AGCATAAGTT AAAACCTTTA TAATAGTTTG ATTGGTAGAA ACTCTTATGC AAATAATTAT TTGAGGGTTT ATTCAAGATA
TGCACTAAAC CGAAACCATT CGATGCATTT ATGCTCGTTT ATATTCCAAA GACCAACGGA GAATGATTGA TCTGATTTTG
CAGTTGCTGA TATATTGCTA TGGAAAGACA AGATATCATC GGCAACAATG GTAGCTGGAT TCTCCATGAT TTGGTTCCTC
TTTGAAGTGG TCGAATACAA TTTTCTCACT CTTCTTTGTC ACATCCTCAT CGCCGTCATG CTCGTCCTAT TCGTATGGTA
TAATGCAGCA GGACTCATCA CATGGTATAA TGTTCTTGCA CTCTCTATAT ACATTGATTT TTCTGAAGTC CTTAATTTAG
AATCTTTCTT CATAGTTTCT GCAGAAAGAG TAATACGTTA TTCTTTGCAG GAGCCTGCCT CAAATCTATG ATTTTCAAAT
CCCCGAACCC ACCTTTAGAT TCTTGTTCCA AAAGCTGAAC TCATTCTTGA GGAATTTTTA CGACATTTCA ACTGGGAAAG
ACCTAACACT CTTCTTTGTG GTATTGAGAA ACAATTTTCA GTCAGTCAAA CACATTTTGT CTTAATTATT TCTTAATGAC
ATCATGTTAA TGAATTTCAG ACAATTACCG GTCTCTGGGT CATGTCAGCT ATTGGGAATT ATTTTACAAC TTTGAATCTC
CTATATATAC GTGAGATCCC AATTACAATT GTGCTGTTAT CAATTATATC AAGATTCCTA GTAATAATGA TTGAACCTTT
GTTATTAACT TTTTGTTGCT CTTTATCTTT CTTCCACAGT GTTCCTCTGC CTGGTGACCC TTCCCATTAT GTATGAGCGA
TATGAACAAG AGGTGAATTA TCTAGCAAGC AAAGGAAATC AAGACGTGAA GAGATTGTTC AATACATTGG ATAATAAAGT
TCTGAACAAG ATTCCAAGGG GACCTGTGAA AGAAAAGAAG AACAAATGAG TTTTAGATAT GGGAAAGTGT GTAAAAGATA
ATAATGATTG CAAAATTATT TATTCGCAAC CACAAACTAT TGTATAAAAA AATATATATG ATGGTGGAAT AATTGATATT
GTTTAATGCA TTTTAGAACA TTCATAATA

>Vigan.08G034200.01
CCGTCCCTCT CATGTGTAGT TGTATAATAT TCCCACGAAA AGTAGTAAGA AAAAACAACA ACATAGGATT AGACACGGTC
GAGGGTAAAC GTGACAGACA CTAACAATGT ATCCTAAGTC ATGTGTGGGC ACGAGAAAAT GAAACTTGAA AAGCATGCCA
AAGCCATACC TTTCCTCTCA GGAACGAGTT CATCAAATTT CTTGGTTACA AAGGTTAGAA CCACAATACA TCACATATAA
GTTGCTACCA CGAAACATGA ATCACAATAG TGCTACAAAC TTACCTCACC AGAATCAACA AACACAACCA ATACATTTTC
AATCATTCTA TTCTTAACTA TGCCAATCCG TTCTCGTGAG CCTGCACAAA GGCCAGGTTT CTTCCACCGA CAGAGACCAC
TCCATGCACT TCTTGGCGGA GGAAAGCTTG CTGATATATT GCTATGGAAA GACAAGATAT CATCGGCAAC AATGGTAGCT
GGATTCTCCA TGATTTGGTT CCTCTTTGAA GTGGTCGAAT ACAATTTTCT CACTCTTCTT TGTCACATCC TCATCGCCGT
CATGCTCGTC CTATTCGTAT GGTATAATGC AGCAGGACTC ATCACATGGA GCCTGCCTCA AATCTATGAT TTTCAAATCC
CCGAACCCAC CTTTAGATTC TTGTTCCAAA AGCTGAACTC ATTCTTGAGG AATTTTTACG ACATTTCAAC TGGGAAAGAC
CTAACACTCT TCTTTGTGAC AATTACCGGT CTCTGGGTCA TGTCAGCTAT TGGGAATTAT TTTACAACTT TGAATCTCCT
ATATATACTG TTCCTCTGCC TGGTGACCCT TCCCATTATG TATGAGCGAT ATGAACAAGA GGTGAATTAT CTAGCAAGCA
AAGGAAATCA AGACGTGAAG AGATTGTTCA ATACATTGGA TAATAAAGTT CTGAACAAGA TTCCAAGGGG ACCTGTGAAA
GAAAAGAAGA ACAAATGAGT TTTAGATATG GGAAAGTGTG TAAAAGATAA TAATGATTGC AAAATTATTT ATTCGCAACC
ACAAACTATT GTATAAAAAA ATATATATGA TGGTGGAATA ATTGATATTG TTTAATGCAT TTTAGAACAT TCATAATA

>Vigan.08G034200.01
ATGCCAATCC GTTCTCGTGA GCCTGCACAA AGGCCAGGTT TCTTCCACCG ACAGAGACCA CTCCATGCAC TTCTTGGCGG
AGGAAAGCTT GCTGATATAT TGCTATGGAA AGACAAGATA TCATCGGCAA CAATGGTAGC TGGATTCTCC ATGATTTGGT
TCCTCTTTGA AGTGGTCGAA TACAATTTTC TCACTCTTCT TTGTCACATC CTCATCGCCG TCATGCTCGT CCTATTCGTA
TGGTATAATG CAGCAGGACT CATCACATGG AGCCTGCCTC AAATCTATGA TTTTCAAATC CCCGAACCCA CCTTTAGATT
CTTGTTCCAA AAGCTGAACT CATTCTTGAG GAATTTTTAC GACATTTCAA CTGGGAAAGA CCTAACACTC TTCTTTGTGA
CAATTACCGG TCTCTGGGTC ATGTCAGCTA TTGGGAATTA TTTTACAACT TTGAATCTCC TATATATACT GTTCCTCTGC
CTGGTGACCC TTCCCATTAT GTATGAGCGA TATGAACAAG AGGTGAATTA TCTAGCAAGC AAAGGAAATC AAGACGTGAA
GAGATTGTTC AATACATTGG ATAATAAAGT TCTGAACAAG ATTCCAAGGG GACCTGTGAA AGAAAAGAAG AACAAATGA

>Vigan.08G034200.01
MPIRSREPAQ RPGFFHRQRP LHALLGGGKL ADILLWKDKI SSATMVAGFS MIWFLFEVVE YNFLTLLCHI LIAVMLVLFV
WYNAAGLITW SLPQIYDFQI PEPTFRFLFQ KLNSFLRNFY DISTGKDLTL FFVTITGLWV MSAIGNYFTT LNLLYILFLC
LVTLPIMYER YEQEVNYLAS KGNQDVKRLF NTLDNKVLNK IPRGPVKEKK NK*