GBrowse Details

Vigan.08G029500.01

Basic Information:
Name: Vigan.08G029500.01
Multiple alignment
Variant Information
Position: Chr08:2358978..2362218 (- strand)
Length: 3241
Functional Information:
Description: Similar to 50S ribosomal protein L15, chloroplastic-like. [XP_004497089.1, Cicer arietinum]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Cellular Component: large ribosomal subunit (GO:0015934)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L15, conserved site (IPR001196)
Ribosomal protein L15, bacterial-type (IPR005749)
Ribosomal protein L18e/L15P (IPR021131)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:21.18,21.29,52.44,164.93,16.94,46.47,12.73,45.56
Arabidopsis thaliana homolog: AT3G25920.1
Automatic updates:
Name: NM_001248130 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306183 (LOC100306183), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:2358978..2359250 (- strand)
Length: 273
Type: three_prime_UTR
Position: Chr08:2359251..2359469 (- strand)
Length: 219
Type: CDS
Position: Chr08:2360636..2360787 (- strand)
Length: 152
Type: CDS
Position: Chr08:2361688..2362015 (- strand)
Length: 328
Type: CDS
Position: Chr08:2362090..2362149 (- strand)
Length: 60
Type: CDS
Position: Chr08:2362150..2362218 (- strand)
Length: 69
Type: five_prime_UTR

>Vigan.08G029500.01 class=Sequence position=Chr08:2358978..2362218 (- strand)
ATCCTATCCG TTATTTGAAG TTTGATAGTG CAGTTATCGT GTCATCTCTG GGAGTCCATC ATCACAGAAA TGGCCACTGC
TTTTCTCATT CCACTCTCAT GGTCACCGCA GCTGTCTACT CCTTTCAAGG TTTTTCATCT CCCTCCAAAA AAAGTAAGAA
TCTTCTTCGT CTCTATTTCT TCTCAACCAT TTGGGCATTG CAGGGAACAG TGAAAACCTT AGTTGCAAAA CCATGTGTGA
AGATTCAGCG AGCAAGACCC ATCGTTTTCG CAGGTTACAA GTCTACCTCT GCCCCGGTGG CAACGCCCCT GGTCGGCGTT
CGGTTTCGGC TGGACAATTT GGGGCCCCAA CCGGGTTCCA GGAAGAGGGC AAAGAGAAAG GGTAGAGGAA TATCTGCAGG
GCAAGGAGCA AGTTGTGGTT TTGGGATGAG GGGTCAGAAA TCTCGATCTG GGCCTGGAGT TAGGAAGGGT TTCGAAGGTG
GTCAGATGCC CCTTTATCGA CGAATCCCCA AACTCAGAGG AATCGCAGGA GGTAATGCCC CCAATTAATT GGGGATTCTA
TCATTATCAG TAGCAACATG AAAAACATTA CTTTTAAAAC TGCAATTTTA GATCAGTGTT GCAATCCCTT GATGCAGATG
AAAAAATTGT GACTGAATTA TACCTTAGTT TACTTTTACT TGTGGGTATT GTTGTATGTT AGGCTCTAGT CCTGGTATTG
TTATATGTAA TTTTACTTAA ACTCCATTAC GATACCTTCA TGACCAATGT CTTATTGCCC TTTTTTTTTC ATTAAGTGAC
TTTTACAATT GAAGAAGTCA AAAGTTGTAG TGTAAACTGT TATATATTAG TGGGCAATTT GGTTACAAAT TGTTGCTACA
TTGTATTTGG TTTGTCGTCA AGCTGTTATC CATCCTAGAG ACGGGGTATA TATATTGTGG GACTTCACAC GATGAATTTC
TCTAATATTT GAAGAAGCAC TCGGAGGAAA CAAGAGCCCG GAAATGGTGA TTATTGTAGG AAGGGAATCG TTGCATTTTG
GATGCGATCA ATCTGTAGCA TCTTAGTTTC CTTTCCTCAG ATGTTGTTAT TGTCAAACTT CTTTACTAAT ATGCCCCCTT
TCATCTCAGA TGTTGTTGTA TGTTGAAACA TATTGGCAAC ATGCTCTTTT GAACACACTA TTAGCTGAAA TTTATTATAA
GTCACAGTAT TGTGTCCGTC TCACTTATTT AATGTATATC ATACATGATT ATATATAGTT TCCAGTAAAG TTCACCAATA
AATAGTAGAG GTTGTGTGGT TTTGCACTCT TGTATATTTC TTCTTTTTTT ATTTCCTCTC TTAACTTGTT TAGTCAATGC
TTGTGCATTT ATCTCCTTCG GAACTATTCT TTTATGCCAC TTTTTTTCTT TTCCTTTGTC CTATATATAA GGTATGCATG
CGGGATTGCC CAAATATGTC CATGTAAATC TGAGAGACAT AGAAGATGCT AAATTTAAGG AAGGGGAAGA GGTGTCTCTC
GAGTCACTGA AGGCTAAAGG TGTGATTAAC CCATCAGGAA GAGAAAGAAG ACTTCCTTTG AAGGTACATA TTACTTCTTG
ATTGAATGAC ATATAAATTT CTTCCTTAGC TGTCATCTTA AATCATACTT CTTCATGATC GTTTTCTGGA TGTCTCGAGG
TATTATGAAT GATTAAATTT TTTAAAGTAA ACGAGGATGC TAGTTTCCTA GCAGTAACAC CAACTATCAT GAAGGTCAAT
TCTTTAGAGT CCCCTGCTCT GCTGTGAAAG AAATTACTTT CGGTTAATTT TGTGATGTTC TTTCTTCCTA GTTTGTTATT
TTAGTTTATC TGCACCTTTT GCCATGTATG ATCTAACATA TGATATTTAG GTGGATGTGT CAGTGGTTTG AAGCTGTAAA
TTCTTTGTTC CGAACACCAA AATTTACGTA TACTGGTATC TATTCTGATT GTGAATCTTC TATTAGACCA TTTCTTTTAT
CCATCATGGA TAAATTAGCT TATGGTCAGT GGTTTTGTTT TTCAGATTGT CAGTACTCCC TTTAAAAACG TACTTTATGA
TGATTTTTCA AGCAATAACT ACTTTGCCGC CTACAGCTCA GGAGGCAAAT ATTCAAAGTC ATTTATTTAT GTCCTTTTTC
CATATCTTTA TGCTATTCCT TTGTTTTTCG TACAATAAAA GGTCTTTTCC ATATCTTTAT TCCAGAGGCC AAATGCTAGT
TTTTTCCATA TCTTTATTCC AGAGGCCAAA TGCTAGACTC ATTATTCCGA TGAAATATTC TTTGTGGGAT AAGCAATGAG
ATGTAAAGAC ATGCCCATCA GTGTAGTAGT ATCTTTAAAT GATAATTTTT CTACCAAAAG AAAATTAATA TTTAGGTAAA
TAAACTGCAC TCTACATTGA CATTTATTTC AATAAGCTTT TGAAATGGAA TGATTCTTGA ACTTGAGAGG ATACTTACTT
ATATTTAATG GTTGAAACTT TAGTTCGCTC TGGCAAATGT TGTATACCTG GATCATCGTG CATCTGTGGA TTAAATTTTA
CTGTATTCAA TTTGTATAAA TGCATCAGGA AATCTTTGCA AATAATTGGT TTCTTTACAA CATTAAACCA GATAGTATTG
TATGTTTAAG CTAGCCTTTT AATTCTATTT ACCCATCCAA TGCATCATCC GAACTCAGAA GGCCTTAACA TTTGATCAAA
ACAAAATTAA TTGTGCCTTT TGGTTTCAGA TTTTGGGTGA AGGAGAACTG AGCAAGAAAT TGACGCTAAA AGCCCGTGCC
TTTTCCACAG CAGCGAAGGA GAAACTTGAG AGTGCTGGAT GTTCTCTCAC CTTGCTTCCT GGCCGCAAGA AATGGGTTAA
GCCATCAGTT GCTAAAAACC TTGCTCGTGC TGAAGAATAC TTTGCCAAGA AGCGCGCTGC AGCTGCCACC GAGGCAGCCT
CTGCTTGAAC TTGAACTACT TCTGTGTCAT CACATTTTAG AAATCTTCAA GAGAGTTGCA GATTGATTTC TTTAGGAACT
ACCTCACATA TTTGTCGTTC TTCAGAGTTC TCTCGGTTCA TCAATCTGTT GTGTTACCTA AGGCATTAAT TCATTCTTCT
TTCTGCATTT AAATGTTTTC TAGTTCTGGT TCCAAACGAT GTTTATTGTT GTATACCTTG TAACATTTTG TTCAACCATC
ACCAGAAACT GTTTTGGAAA AAAAGAAAGC GTAAGAAAAT G

>Vigan.08G029500.01
ATCCTATCCG TTATTTGAAG TTTGATAGTG CAGTTATCGT GTCATCTCTG GGAGTCCATC ATCACAGAAA TGGCCACTGC
TTTTCTCATT CCACTCTCAT GGTCACCGCA GCTGTCTACT CCTTTCAAGG GAACAGTGAA AACCTTAGTT GCAAAACCAT
GTGTGAAGAT TCAGCGAGCA AGACCCATCG TTTTCGCAGG TTACAAGTCT ACCTCTGCCC CGGTGGCAAC GCCCCTGGTC
GGCGTTCGGT TTCGGCTGGA CAATTTGGGG CCCCAACCGG GTTCCAGGAA GAGGGCAAAG AGAAAGGGTA GAGGAATATC
TGCAGGGCAA GGAGCAAGTT GTGGTTTTGG GATGAGGGGT CAGAAATCTC GATCTGGGCC TGGAGTTAGG AAGGGTTTCG
AAGGTGGTCA GATGCCCCTT TATCGACGAA TCCCCAAACT CAGAGGAATC GCAGGAGGTA TGCATGCGGG ATTGCCCAAA
TATGTCCATG TAAATCTGAG AGACATAGAA GATGCTAAAT TTAAGGAAGG GGAAGAGGTG TCTCTCGAGT CACTGAAGGC
TAAAGGTGTG ATTAACCCAT CAGGAAGAGA AAGAAGACTT CCTTTGAAGA TTTTGGGTGA AGGAGAACTG AGCAAGAAAT
TGACGCTAAA AGCCCGTGCC TTTTCCACAG CAGCGAAGGA GAAACTTGAG AGTGCTGGAT GTTCTCTCAC CTTGCTTCCT
GGCCGCAAGA AATGGGTTAA GCCATCAGTT GCTAAAAACC TTGCTCGTGC TGAAGAATAC TTTGCCAAGA AGCGCGCTGC
AGCTGCCACC GAGGCAGCCT CTGCTTGAAC TTGAACTACT TCTGTGTCAT CACATTTTAG AAATCTTCAA GAGAGTTGCA
GATTGATTTC TTTAGGAACT ACCTCACATA TTTGTCGTTC TTCAGAGTTC TCTCGGTTCA TCAATCTGTT GTGTTACCTA
AGGCATTAAT TCATTCTTCT TTCTGCATTT AAATGTTTTC TAGTTCTGGT TCCAAACGAT GTTTATTGTT GTATACCTTG
TAACATTTTG TTCAACCATC ACCAGAAACT GTTTTGGAAA AAAAGAAAGC GTAAGAAAAT G

>Vigan.08G029500.01
ATGGCCACTG CTTTTCTCAT TCCACTCTCA TGGTCACCGC AGCTGTCTAC TCCTTTCAAG GGAACAGTGA AAACCTTAGT
TGCAAAACCA TGTGTGAAGA TTCAGCGAGC AAGACCCATC GTTTTCGCAG GTTACAAGTC TACCTCTGCC CCGGTGGCAA
CGCCCCTGGT CGGCGTTCGG TTTCGGCTGG ACAATTTGGG GCCCCAACCG GGTTCCAGGA AGAGGGCAAA GAGAAAGGGT
AGAGGAATAT CTGCAGGGCA AGGAGCAAGT TGTGGTTTTG GGATGAGGGG TCAGAAATCT CGATCTGGGC CTGGAGTTAG
GAAGGGTTTC GAAGGTGGTC AGATGCCCCT TTATCGACGA ATCCCCAAAC TCAGAGGAAT CGCAGGAGGT ATGCATGCGG
GATTGCCCAA ATATGTCCAT GTAAATCTGA GAGACATAGA AGATGCTAAA TTTAAGGAAG GGGAAGAGGT GTCTCTCGAG
TCACTGAAGG CTAAAGGTGT GATTAACCCA TCAGGAAGAG AAAGAAGACT TCCTTTGAAG ATTTTGGGTG AAGGAGAACT
GAGCAAGAAA TTGACGCTAA AAGCCCGTGC CTTTTCCACA GCAGCGAAGG AGAAACTTGA GAGTGCTGGA TGTTCTCTCA
CCTTGCTTCC TGGCCGCAAG AAATGGGTTA AGCCATCAGT TGCTAAAAAC CTTGCTCGTG CTGAAGAATA CTTTGCCAAG
AAGCGCGCTG CAGCTGCCAC CGAGGCAGCC TCTGCTTGA

>Vigan.08G029500.01
MATAFLIPLS WSPQLSTPFK GTVKTLVAKP CVKIQRARPI VFAGYKSTSA PVATPLVGVR FRLDNLGPQP GSRKRAKRKG
RGISAGQGAS CGFGMRGQKS RSGPGVRKGF EGGQMPLYRR IPKLRGIAGG MHAGLPKYVH VNLRDIEDAK FKEGEEVSLE
SLKAKGVINP SGRERRLPLK ILGEGELSKK LTLKARAFST AAKEKLESAG CSLTLLPGRK KWVKPSVAKN LARAEEYFAK
KRAAAATEAA SA*