GBrowse Details

Vigan.08G029100.01

Basic Information:
Name: Vigan.08G029100.01
Multiple alignment
Variant Information
Position: Chr08:2320079..2321909 (+ strand)
Length: 1831
Functional Information:
Description: Similar to Uncharacterized protein. [I1LEW9, Glycine max]
GO: Cellular Component: intracellular (GO:0005622)
Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, B-box (IPR000315)
CCT domain (IPR010402)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.02,0.42,16.10,0.08,1.51,4.39,0.20
Arabidopsis thaliana homolog: AT1G25440.1
Automatic updates:
Name: NM_001292011 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max zinc finger protein CONSTANS-LIKE 16-like (COL22), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:2320079..2320210 (+ strand)
Length: 132
Type: five_prime_UTR
Position: Chr08:2320211..2321215 (+ strand)
Length: 1005
Type: CDS
Position: Chr08:2321486..2321737 (+ strand)
Length: 252
Type: CDS
Position: Chr08:2321738..2321909 (+ strand)
Length: 172
Type: three_prime_UTR

>Vigan.08G029100.01 class=Sequence position=Chr08:2320079..2321909 (+ strand)
CGTTCACACT CACACCCACC CTTTTTTCAT CAAAATAATA ATCATTGTAT TGTATTCCCT CCTCTGTAGC CAAACCCACA
CTGTAACCAA TCCCCCCGTT TCATATCTGC CTTCAAATTT TGTTTGAGTC TCATGAGTAC GGCAAAGAAC GCGGCAAACG
CGGTTGGAGG CAAAACCGCA AGAGCATGCG ACAGCTGCAT AACCAAGCGG GCACGTTGGT ACTGTGCTGC CGATGATGCT
TTTCTCTGCC AAGCTTGTGA CTCTTCGGTT CACTCCGCCA ATCCTTTGGC TCGCCGACAC GAAAGAGTCC GCTTGAAAAC
GGCGTCGTAC AGGTCCACCG ACGAACAACA ACAACAACAA CCTCCCACGT GGCCCACTAA GAAAGCTCGA ACGCCCAGAC
ACGGGAAACA CTCTCGTAGC AACAACCCCT TCCATCTGGT CCCGGAAGTG GGTTCGGAAG AGGTGAATTC CCATGACGAG
AACGAGGAGC AGCTTCTTTA CAGGGTCCCC ATATTCGAAC CTTTTGTTGC CGAACTATGT GGGAATAACA GCTCTTCTCC
TTCTTCGGTG ACTTCAACCG ATCAAGGAGT AGCAGCTGCT GTGGCCGAGG CCGAAAACAA AGGGGTTGAG AGCAATGTTT
TATATCACAG TAATAATGAG ATGGAAAACT TGCACGGGAT GCTTCCTTCC GATGCAGAAC TTGCCGAGTT TGCGGCTGAT
GTTGAGAATT TACTGGGTAG GGGGCTTGAA AACGAGTGTG TGGGGATGGA GGATCTGGGA CTGATTGATG CGAAGGAGGA
GGAGTGTTCG GTGGGTAGTG GGGAGGTGAA GGTGGAAGAG GAAGAGAGCC CTGAGATGGA GATGGAGATG GAGATGGAGA
TGGTGGGAAG AGATGTATCG TTTGAGTTTA GCTTTGATTA CGATACGTGC GAAGAGGTGA AGGAGAAGGT TTGTGATTTG
GAATTGGGGA AGGAGAATGA AGAAGAACTG AGAGAGAATG ATGAGGTGAA AAAGAAGAAG ATATCGTTGC AGCTTGATTA
TGAGGCAGTG ATTATCGCCT GGGCTAGCCA AAAGTCTCCC TGGACCACTC CTGACAAGCC AAACTTAGAC CCCGACCAGT
GCTGGCACGA ATGCATCGTA TGTACTATTC CCTTTCCTTT TTCATCTATC TTTTCTTATT AATTCTCACC AACTGTTAGA
TTCGCCCTAA CTTGTTCGTC TTTGCATGTA GTATCAGTTA TATTTGTATT AATCAGTTTT AATAAATTTT ACTTAACAAC
AGTCAATGTA TTAAAAAATT GTGTTGGCGG ATTTTGGTTT TTGAAAAATT AAATTGAACA TAGAATTTGG GGGTGATGTG
ATGTTTGTTT GTTTGAGTGA CTAATGATGT TTAATTTAAT TAAGCAGGAA AGTTATGGAA GGGGAATTCA TGATTCTTAT
GGTGAAGTGG GTGGATTTGG GATTCATCCA GTGATAATTG ATGGAGGCAG AGAGGCAAGA GTGTCAAGGT ACAGAGAAAA
GCGGCGAACA AGGTTGTTCT CTAAGAAAAT AAGGTACGAG GTTAGGAAAT TGAATGCAGA GAAGAGACCC AGAATGAAGG
GGAGGTTTGT CAAGAGAGCT TCCTTTGCAC CATCAACATT TCCCTTGCTA AATCATTAAG ACCTCATTCA AGTTTTGTTT
ACTATTTATT TCCTAAATAT TATATTTTTG CTCAGTGCAT CCTAATGCTT TTCATTTTAT TTTCTCAGCT ATTTGTAAAT
AGCAATTTTG TTAAGTTAAT AAATGCTCCA AATTTCTAAT CACGTCTTGT CCATATAGAT CTTTTAAGAG G

>Vigan.08G029100.01
CGTTCACACT CACACCCACC CTTTTTTCAT CAAAATAATA ATCATTGTAT TGTATTCCCT CCTCTGTAGC CAAACCCACA
CTGTAACCAA TCCCCCCGTT TCATATCTGC CTTCAAATTT TGTTTGAGTC TCATGAGTAC GGCAAAGAAC GCGGCAAACG
CGGTTGGAGG CAAAACCGCA AGAGCATGCG ACAGCTGCAT AACCAAGCGG GCACGTTGGT ACTGTGCTGC CGATGATGCT
TTTCTCTGCC AAGCTTGTGA CTCTTCGGTT CACTCCGCCA ATCCTTTGGC TCGCCGACAC GAAAGAGTCC GCTTGAAAAC
GGCGTCGTAC AGGTCCACCG ACGAACAACA ACAACAACAA CCTCCCACGT GGCCCACTAA GAAAGCTCGA ACGCCCAGAC
ACGGGAAACA CTCTCGTAGC AACAACCCCT TCCATCTGGT CCCGGAAGTG GGTTCGGAAG AGGTGAATTC CCATGACGAG
AACGAGGAGC AGCTTCTTTA CAGGGTCCCC ATATTCGAAC CTTTTGTTGC CGAACTATGT GGGAATAACA GCTCTTCTCC
TTCTTCGGTG ACTTCAACCG ATCAAGGAGT AGCAGCTGCT GTGGCCGAGG CCGAAAACAA AGGGGTTGAG AGCAATGTTT
TATATCACAG TAATAATGAG ATGGAAAACT TGCACGGGAT GCTTCCTTCC GATGCAGAAC TTGCCGAGTT TGCGGCTGAT
GTTGAGAATT TACTGGGTAG GGGGCTTGAA AACGAGTGTG TGGGGATGGA GGATCTGGGA CTGATTGATG CGAAGGAGGA
GGAGTGTTCG GTGGGTAGTG GGGAGGTGAA GGTGGAAGAG GAAGAGAGCC CTGAGATGGA GATGGAGATG GAGATGGAGA
TGGTGGGAAG AGATGTATCG TTTGAGTTTA GCTTTGATTA CGATACGTGC GAAGAGGTGA AGGAGAAGGT TTGTGATTTG
GAATTGGGGA AGGAGAATGA AGAAGAACTG AGAGAGAATG ATGAGGTGAA AAAGAAGAAG ATATCGTTGC AGCTTGATTA
TGAGGCAGTG ATTATCGCCT GGGCTAGCCA AAAGTCTCCC TGGACCACTC CTGACAAGCC AAACTTAGAC CCCGACCAGT
GCTGGCACGA ATGCATCGAA AGTTATGGAA GGGGAATTCA TGATTCTTAT GGTGAAGTGG GTGGATTTGG GATTCATCCA
GTGATAATTG ATGGAGGCAG AGAGGCAAGA GTGTCAAGGT ACAGAGAAAA GCGGCGAACA AGGTTGTTCT CTAAGAAAAT
AAGGTACGAG GTTAGGAAAT TGAATGCAGA GAAGAGACCC AGAATGAAGG GGAGGTTTGT CAAGAGAGCT TCCTTTGCAC
CATCAACATT TCCCTTGCTA AATCATTAAG ACCTCATTCA AGTTTTGTTT ACTATTTATT TCCTAAATAT TATATTTTTG
CTCAGTGCAT CCTAATGCTT TTCATTTTAT TTTCTCAGCT ATTTGTAAAT AGCAATTTTG TTAAGTTAAT AAATGCTCCA
AATTTCTAAT CACGTCTTGT CCATATAGAT CTTTTAAGAG G

>Vigan.08G029100.01
ATGAGTACGG CAAAGAACGC GGCAAACGCG GTTGGAGGCA AAACCGCAAG AGCATGCGAC AGCTGCATAA CCAAGCGGGC
ACGTTGGTAC TGTGCTGCCG ATGATGCTTT TCTCTGCCAA GCTTGTGACT CTTCGGTTCA CTCCGCCAAT CCTTTGGCTC
GCCGACACGA AAGAGTCCGC TTGAAAACGG CGTCGTACAG GTCCACCGAC GAACAACAAC AACAACAACC TCCCACGTGG
CCCACTAAGA AAGCTCGAAC GCCCAGACAC GGGAAACACT CTCGTAGCAA CAACCCCTTC CATCTGGTCC CGGAAGTGGG
TTCGGAAGAG GTGAATTCCC ATGACGAGAA CGAGGAGCAG CTTCTTTACA GGGTCCCCAT ATTCGAACCT TTTGTTGCCG
AACTATGTGG GAATAACAGC TCTTCTCCTT CTTCGGTGAC TTCAACCGAT CAAGGAGTAG CAGCTGCTGT GGCCGAGGCC
GAAAACAAAG GGGTTGAGAG CAATGTTTTA TATCACAGTA ATAATGAGAT GGAAAACTTG CACGGGATGC TTCCTTCCGA
TGCAGAACTT GCCGAGTTTG CGGCTGATGT TGAGAATTTA CTGGGTAGGG GGCTTGAAAA CGAGTGTGTG GGGATGGAGG
ATCTGGGACT GATTGATGCG AAGGAGGAGG AGTGTTCGGT GGGTAGTGGG GAGGTGAAGG TGGAAGAGGA AGAGAGCCCT
GAGATGGAGA TGGAGATGGA GATGGAGATG GTGGGAAGAG ATGTATCGTT TGAGTTTAGC TTTGATTACG ATACGTGCGA
AGAGGTGAAG GAGAAGGTTT GTGATTTGGA ATTGGGGAAG GAGAATGAAG AAGAACTGAG AGAGAATGAT GAGGTGAAAA
AGAAGAAGAT ATCGTTGCAG CTTGATTATG AGGCAGTGAT TATCGCCTGG GCTAGCCAAA AGTCTCCCTG GACCACTCCT
GACAAGCCAA ACTTAGACCC CGACCAGTGC TGGCACGAAT GCATCGAAAG TTATGGAAGG GGAATTCATG ATTCTTATGG
TGAAGTGGGT GGATTTGGGA TTCATCCAGT GATAATTGAT GGAGGCAGAG AGGCAAGAGT GTCAAGGTAC AGAGAAAAGC
GGCGAACAAG GTTGTTCTCT AAGAAAATAA GGTACGAGGT TAGGAAATTG AATGCAGAGA AGAGACCCAG AATGAAGGGG
AGGTTTGTCA AGAGAGCTTC CTTTGCACCA TCAACATTTC CCTTGCTAAA TCATTAA

>Vigan.08G029100.01
MSTAKNAANA VGGKTARACD SCITKRARWY CAADDAFLCQ ACDSSVHSAN PLARRHERVR LKTASYRSTD EQQQQQPPTW
PTKKARTPRH GKHSRSNNPF HLVPEVGSEE VNSHDENEEQ LLYRVPIFEP FVAELCGNNS SSPSSVTSTD QGVAAAVAEA
ENKGVESNVL YHSNNEMENL HGMLPSDAEL AEFAADVENL LGRGLENECV GMEDLGLIDA KEEECSVGSG EVKVEEEESP
EMEMEMEMEM VGRDVSFEFS FDYDTCEEVK EKVCDLELGK ENEEELREND EVKKKKISLQ LDYEAVIIAW ASQKSPWTTP
DKPNLDPDQC WHECIESYGR GIHDSYGEVG GFGIHPVIID GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG
RFVKRASFAP STFPLLNH*