GBrowse Details

Vigan.08G027300.01

Basic Information:
Name: Vigan.08G027300.01
Multiple alignment
Variant Information
Position: Chr08:2108844..2112992 (- strand)
Length: 4149
Functional Information:
Description: Similar to uncharacterized protein. [C6T4D7, Glycine max]
GO: Cellular Component: membrane (GO:0016020)
InterPro: Uncharacterised protein family UPF0016 (IPR001727)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.37,13.30,34.93,32.56,66.61,44.00,35.58,27.39
Arabidopsis thaliana homolog: AT1G25520.1
Automatic updates:
Name: BT092627 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-11K20 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249381 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527455 (LOC100527455), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:2108844..2109429 (- strand)
Length: 586
Type: three_prime_UTR
Position: Chr08:2109430..2109501 (- strand)
Length: 72
Type: CDS
Position: Chr08:2109844..2109916 (- strand)
Length: 73
Type: CDS
Position: Chr08:2110179..2110240 (- strand)
Length: 62
Type: CDS
Position: Chr08:2110326..2110370 (- strand)
Length: 45
Type: CDS
Position: Chr08:2110522..2110590 (- strand)
Length: 69
Type: CDS
Position: Chr08:2111232..2111279 (- strand)
Length: 48
Type: CDS
Position: Chr08:2111366..2111402 (- strand)
Length: 37
Type: CDS
Position: Chr08:2111502..2111590 (- strand)
Length: 89
Type: CDS
Position: Chr08:2111814..2111861 (- strand)
Length: 48
Type: CDS
Position: Chr08:2112012..2112071 (- strand)
Length: 60
Type: CDS
Position: Chr08:2112537..2112605 (- strand)
Length: 69
Type: CDS
Position: Chr08:2112702..2112719 (- strand)
Length: 18
Type: CDS
Position: Chr08:2112720..2112992 (- strand)
Length: 273
Type: five_prime_UTR

>Vigan.08G027300.01 class=Sequence position=Chr08:2108844..2112992 (- strand)
GCAGTCTTTA GAAATAGAAA AATGTGAAAA GAGAAGCATC TTTCTATTGC TATGGTTATT TTCTTTTTTA TCAAGATAGA
AGGGAATTGA ATTCCATGCT GTGCAAAAAA ATACATTTTT TTTAAAGGGA AAGCACTCAC ACGCGCACAT GTCACTCTGA
GCTTTTGTCA CCTTCCTTCT ACCTTCTGTT TCAGGCGACT TTCACTTCAA CCAACTACAC AACACAACAC AGTCTTCAAT
TCTCTCTGAG TCCTTCTTCT TAGCTCGGCC AACATGAGTT CAATCGTTCA GGTGTTTCCC CTTTCTATTT TCATACAATG
TTCTCTTCTC TCAATTTTCG ATTTCATCAA CATTAATCCT ATTCTTTCTG TTTTTCTCTT TCATTAGGGT TTCACGAAGT
CCTTGGCCAT GACTATTCTC TCGGAGATCG GCGACAAAAC ATTTTTTGCT GCTGCGGTTA GTTTCTACCT TTTTAATGAA
GTATTTTTAG CCCTGTTCTA CATTTTTCTA TTCGTCTGTA GATCTTGTCA TCGACTGCAC CGGATTAATT CGTTGGTTTA
TGAGAGCCAG CGTGTCTTGA CTACTGGAGT GGTGTTCTGG ACTGGACCAA CTGACATATA ATCTTTTCTG TTTATTGTTA
TTATCTTTTT TTAGAGTATT TGTGAATATG CAAATATGTA TTCGGTTGTT TCCGCTGTTA ATTGGATTTG AGTAAAACAT
TCTTCACTGC TCTGGCTGGC AAACTCACGT GGGAGCTATG TTTTGTGTAG TGTGTTTGAA GAGATGACTA GTGTTATTTA
TTTGTTATCT CGTTGCATAG TTCCACACAG AGAAGAAAGG GCCTTTATAT TTGTTTTTCT AATTTTGCTA CTAGAAATTA
ATTAGGACTC TGACTGTTTC ATATTATGAT GCTTATCCAA GATATTGGCT ATGAGGCACC CACGACGTCT AGTCTTATCA
GGTTGCTTAT CATCTTTGAT TGTAAGCTTC TTTTCTCCTT TCTCCTTTAT TTTTTACTGC ACTGTATTAT CTTTTTTGAT
GGTTAGATAA TTTGTCTATT GTATGATATA GGTCTTTTAT TCTTCCTCCT TTTTGAGTTT CATGATTCTG TGTTAACTTT
GAAAATACTA GGTGATGACC ATTCTGTCTG CTCTTGTTGG CTGGGCTGCT CCTAATCTGG TGAGTATTCT TTGTTTCTGG
TCTCGCTTTA CAATTCCAAT CACTGTTTTT TCATTCCTAT AGATTTCTTA GGATGTGCCG TGGTATCAGT CCATTGATTA
ATATATTGAA TGTATTGAGA ATAGATATTT GGCAAATAGA CGGGTGTTAT CTAACTCATG TTTGGCTAAA TTACTCTTCT
TCCTTGATTT CTGCCTTTAG TGATCTTCAT ATAATTCTGC AGATTTCCCG TACTTGGACT CATCACATTA CTACATTGTT
ATTCTTGGGG TTTGGGCTTT GGTCCCTGAA AGATGCATTA TTTGAACAAG GGTGATTGTT ATCTGTCCAT CACATCAACT
TGCTCACCCT TTTCTATTCA CAATAAGCTT GAATCTTGAC TTGTGCTTAA TGATTTTATT TGATGGACAG GGATGCTGAA
GAATTGGCTG AAGTTGAAGC TAAATTGGTT AATAATTTTA CCTCTATTTT TGGTTTCTTA TTTTAGGTTG ACTTTTTATT
GTCTTCTTGA TAGCACGCTT GTACTGTTAT TAGGATAAAG ATTGGAAGGC TAACAATGGA GCTGCAAAAA ATAGCAAAAA
GGTAAGATAA TATCTGTTTT ATAAAATTTT CATTTCCTTA TTTTCTGTCT CTCATGTCAT TCCCTTTTGA TTTTAAGGCA
TGCATGATCA TATCACAGTT GAACATTTAT GCAATAAGAT ATTGTCTAAT AGAGAGCATA TTCATAAGTT TGACTCTGAA
GCTTACTGAT ACAAGCCAAA AAAAACTTAT TTTTACTACT TCACGAAAAT AAGCTAAAAA AGAGCTCATA GGAGGTTACA
AACTACATTC ATAAATCCCG AGTAAGCTAC CCCCAATGTA TTTATTTAAT AGAATATATT TTATTTACTT TATAACTCTT
ATGACTATCA AGTGGTTGAT AGATACTTGG AAGTTTGAAT TTTCAACTAT TACTACATAA TCCAGGAAAG AGGCTCTTAA
TGAATTGATT TTGAATGAAT TGCTTTATAA ATGTTCAATA TCAGATGAGG TAAGGCACAT AACATCTTGC AGGCAAAGTT
TCAACAGCAA AATTTGAAAT TTGGATGACT CCTGTTTTAA GGACTCAATT TATGCAACTT ATTGCCAGTC TCTTGTTGAT
TATGATATTA AAATAAAACA AAATTCTCAA ATGCTATACA TTTGTTGTTC TGATATTGTA TATACCATGC CTCATTTCCC
AGGTTGATGA TGTCGCTAAA AAGCAGCAGC GGTCATTTTT ATCTCAGTTT TTCTCTCCTA TCTTTCTACA GGTAATACAA
TATTAATGGT GGTACCTCTG TACAGTATGT TGTTGAAAAC TGAACTGGGT GATAAACTAT TAATCGTAGC ATCCTTATAC
ATTCTGCAAT TGAACACCGA ACTAGGTTAA ATTTGATTCC CTTTATCATC CCTATTATGC AGGCATTTTC TATCACTTTT
TTTGGTGAAT GGGGTGACAA GAGCCAGGTT AGTATACTGA ATAAGCTCCT TTATTGGAGA ATGGAGACTG CTTAATCACT
TCAATAAGCA TAACTCTTTT TTTCTTGTTC AGCTGGCTAC CATAGGTTTG GCTGCAGATG AGAATCCATT TGGTGTTGTT
CTCGGGGGGA TTCTGTAAGT TTTGGCTTGT AATTTTTCTT TCTTTATTTT GGAATCAGCT TATTTCCTCG AATCTTTCGC
TACTTATCCT TGGGTTGTCG TGATGGCACA TTTTATTTCA ATGATTTGTT GCTGTAATTC TGCGTACATG TTTACTTCCC
TTGCAAACGC GTAGTGTTTG TTAGGAGGCA TAAATATGTA AGCTAGGATA TGTGACAATC TTAAAGTCCT GCAATTTTGA
ATGGGAGGAG TATAATTGTT AATTGTTTTT TCACAGGGGA CAAGCGTTGT GCACCTCTGC TGCTGTTGTT GGAGGGAAGA
GTTTAGCTTC TCGGATATCT GAAAAAATTG TAACAATTTA TAATCCTTTT TATTTTTACT GCTCGTGTCA ATCTCTTTTC
CTCACCTTGA TTTTTTTTTG TGAACTTATT TTAAATTCAA TATTTCGTAT CTTAAATCGT CCTCATACCT CAAGTTTAAA
TAATTTAAAA TTAGTTTCAG ACTACCAAGG AAAAAGAGTA TATAAGAATT GATGGAATAA TGAAGTGGAT ACAAGTGCAA
CATGTGAACA AAAATAGTAC AGCATAACTA CTAGCCATTA GAACACTTTT TGCGATGTAG TGTCCAATTG TGGTGTAGAG
CGGTAAGCCG AGTGTCTATG TCATCTTAAT GTTGTACTCA ATAATTTGCA GGTTGCACTC TCCGGCGGAA TTCTTTTTAT
TGTTTTTGGA ATTCAATCAT ACCTTTCTCC TGTGGAATCA TGAAGGGCTC TGCTATTGGT TAGTGATTAT TCTTTGTGCA
TTTTACTAGA CATGATTGAA AACATGTTTG TTATAATGAT TGGAACTGGT TGCCGGAAGA CCTCAGCTTC GTGTCTAATC
CTCCTGGGTC GTAGATTTCA TTCTCTTACC ACTGTAGAAC CAGAGCCAAA TTCAACATGT TGTCAACTTG AGTAGATTGT
TCTTTCTAGA TAAGCCGTGC CTTTACATAT TCTCTCGTTG TACTCTTTGC TCCATCAATT AAATCCATGT GCTAATTTCC
AATGCTTGAG GAATATTATA AAAGAACACG TTTTTTTGTT TTTGGGGTTA AGTTGGGGAG GAAAACGAAG ATTGCTTGTA
TGCGTATGAT GTTGACACTG TTGAATTAAT GCTCCCGGGG TGATCTTTTT GTCATTGCTT GTGTAGAGGG GATGAAAAAG
CTTTTCCGTC ACTGGAGCAA TTGGTCAAAG TGAAACTGGT AGGTCTCAAT TTGAGTGAAC TTGATATGTA CAATAATCTT
TCCTTTCAAA GTTCATATAA AAATGGGTAG AACCCTCGCT CCCCAAGTGC TGTAACTTGA TATCGCATG

>Vigan.08G027300.01
GCAGTCTTTA GAAATAGAAA AATGTGAAAA GAGAAGCATC TTTCTATTGC TATGGTTATT TTCTTTTTTA TCAAGATAGA
AGGGAATTGA ATTCCATGCT GTGCAAAAAA ATACATTTTT TTTAAAGGGA AAGCACTCAC ACGCGCACAT GTCACTCTGA
GCTTTTGTCA CCTTCCTTCT ACCTTCTGTT TCAGGCGACT TTCACTTCAA CCAACTACAC AACACAACAC AGTCTTCAAT
TCTCTCTGAG TCCTTCTTCT TAGCTCGGCC AACATGAGTT CAATCGTTCA GGGTTTCACG AAGTCCTTGG CCATGACTAT
TCTCTCGGAG ATCGGCGACA AAACATTTTT TGCTGCTGCG ATATTGGCTA TGAGGCACCC ACGACGTCTA GTCTTATCAG
GTTGCTTATC ATCTTTGATT GTGATGACCA TTCTGTCTGC TCTTGTTGGC TGGGCTGCTC CTAATCTGAT TTCCCGTACT
TGGACTCATC ACATTACTAC ATTGTTATTC TTGGGGTTTG GGCTTTGGTC CCTGAAAGAT GCATTATTTG AACAAGGGGA
TGCTGAAGAA TTGGCTGAAG TTGAAGCTAA ATTGGATAAA GATTGGAAGG CTAACAATGG AGCTGCAAAA AATAGCAAAA
AGGTTGATGA TGTCGCTAAA AAGCAGCAGC GGTCATTTTT ATCTCAGTTT TTCTCTCCTA TCTTTCTACA GGCATTTTCT
ATCACTTTTT TTGGTGAATG GGGTGACAAG AGCCAGCTGG CTACCATAGG TTTGGCTGCA GATGAGAATC CATTTGGTGT
TGTTCTCGGG GGGATTCTGG GACAAGCGTT GTGCACCTCT GCTGCTGTTG TTGGAGGGAA GAGTTTAGCT TCTCGGATAT
CTGAAAAAAT TGTTGCACTC TCCGGCGGAA TTCTTTTTAT TGTTTTTGGA ATTCAATCAT ACCTTTCTCC TGTGGAATCA
TGAAGGGCTC TGCTATTGGT TAGTGATTAT TCTTTGTGCA TTTTACTAGA CATGATTGAA AACATGTTTG TTATAATGAT
TGGAACTGGT TGCCGGAAGA CCTCAGCTTC GTGTCTAATC CTCCTGGGTC GTAGATTTCA TTCTCTTACC ACTGTAGAAC
CAGAGCCAAA TTCAACATGT TGTCAACTTG AGTAGATTGT TCTTTCTAGA TAAGCCGTGC CTTTACATAT TCTCTCGTTG
TACTCTTTGC TCCATCAATT AAATCCATGT GCTAATTTCC AATGCTTGAG GAATATTATA AAAGAACACG TTTTTTTGTT
TTTGGGGTTA AGTTGGGGAG GAAAACGAAG ATTGCTTGTA TGCGTATGAT GTTGACACTG TTGAATTAAT GCTCCCGGGG
TGATCTTTTT GTCATTGCTT GTGTAGAGGG GATGAAAAAG CTTTTCCGTC ACTGGAGCAA TTGGTCAAAG TGAAACTGGT
AGGTCTCAAT TTGAGTGAAC TTGATATGTA CAATAATCTT TCCTTTCAAA GTTCATATAA AAATGGGTAG AACCCTCGCT
CCCCAAGTGC TGTAACTTGA TATCGCATG

>Vigan.08G027300.01
ATGAGTTCAA TCGTTCAGGG TTTCACGAAG TCCTTGGCCA TGACTATTCT CTCGGAGATC GGCGACAAAA CATTTTTTGC
TGCTGCGATA TTGGCTATGA GGCACCCACG ACGTCTAGTC TTATCAGGTT GCTTATCATC TTTGATTGTG ATGACCATTC
TGTCTGCTCT TGTTGGCTGG GCTGCTCCTA ATCTGATTTC CCGTACTTGG ACTCATCACA TTACTACATT GTTATTCTTG
GGGTTTGGGC TTTGGTCCCT GAAAGATGCA TTATTTGAAC AAGGGGATGC TGAAGAATTG GCTGAAGTTG AAGCTAAATT
GGATAAAGAT TGGAAGGCTA ACAATGGAGC TGCAAAAAAT AGCAAAAAGG TTGATGATGT CGCTAAAAAG CAGCAGCGGT
CATTTTTATC TCAGTTTTTC TCTCCTATCT TTCTACAGGC ATTTTCTATC ACTTTTTTTG GTGAATGGGG TGACAAGAGC
CAGCTGGCTA CCATAGGTTT GGCTGCAGAT GAGAATCCAT TTGGTGTTGT TCTCGGGGGG ATTCTGGGAC AAGCGTTGTG
CACCTCTGCT GCTGTTGTTG GAGGGAAGAG TTTAGCTTCT CGGATATCTG AAAAAATTGT TGCACTCTCC GGCGGAATTC
TTTTTATTGT TTTTGGAATT CAATCATACC TTTCTCCTGT GGAATCATGA 

>Vigan.08G027300.01
MSSIVQGFTK SLAMTILSEI GDKTFFAAAI LAMRHPRRLV LSGCLSSLIV MTILSALVGW AAPNLISRTW THHITTLLFL
GFGLWSLKDA LFEQGDAEEL AEVEAKLDKD WKANNGAAKN SKKVDDVAKK QQRSFLSQFF SPIFLQAFSI TFFGEWGDKS
QLATIGLAAD ENPFGVVLGG ILGQALCTSA AVVGGKSLAS RISEKIVALS GGILFIVFGI QSYLSPVES*