GBrowse Details

Vigan.08G012900.01

Basic Information:
Name: Vigan.08G012900.01
Multiple alignment
Variant Information
Position: Chr08:891849..895074 (- strand)
Length: 3226
Functional Information:
Description: Similar to Uncharacterized protein. [C6TBW7, Glycine max]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
Small GTPase superfamily, ARF type (IPR024156)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.96,26.61,31.08,17.18,31.13,21.80,30.89,19.70
Automatic updates:
Name: NM_001249871 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499844 (LOC100499844), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:891849..892590 (- strand)
Length: 742
Type: three_prime_UTR
Position: Chr08:892591..892818 (- strand)
Length: 228
Type: CDS
Position: Chr08:892890..892952 (- strand)
Length: 63
Type: CDS
Position: Chr08:893152..893249 (- strand)
Length: 98
Type: CDS
Position: Chr08:893472..893537 (- strand)
Length: 66
Type: CDS
Position: Chr08:893985..894085 (- strand)
Length: 101
Type: CDS
Position: Chr08:894425..894497 (- strand)
Length: 73
Type: CDS
Position: Chr08:894800..894872 (- strand)
Length: 73
Type: CDS
Position: Chr08:894873..895074 (- strand)
Length: 202
Type: five_prime_UTR

>Vigan.08G012900.01 class=Sequence position=Chr08:891849..895074 (- strand)
GGAGAATAGG GTGTGGGCGG GAGCATGAAA GAAGAAGTGT GGTGGCAAAA CGTAACGGGA TGATATGATA GGCGCAGAGA
GAGAAAACGC AAAGACATTT GGTGTTGGAT CCCTTTCCAT GTCGCCCACC GCTTCCTTCT TCTTCTAACC ATTTCCCTTC
CGATCCCTCT TCCGCGCGTT AGGGCATTTT TCTCACTCAG CCATGGCAGC AGCACCCGCC AGAGCTCGTG CCGATTACGA
TTACCTCATC AAGCTCCTTC TTATTGGCGA CAGCGGTTCG TTATTCCCCC TTTTTCCTTC GCTTTTTCTT TCCCAGATTC
AACGTTGTGC TACAATTCTG TTGCCGTTTC CTCTCATATA TCTATCACCT TCCTTTCTCA ACTTTACGCC GTCGTTTCCC
ATCACTGAAA ACCGCTTTTT AGAAGCGTGA TTGCAAGTTT TCCTTCGGAA TTGGAGTTAG TGTTTTGTGG ATAGTTTCAA
ATAGCTGAGT ATAGGACAAG GAGTGTTGCC TCTGCTCTGT ACTTTAGTTT TGTTTTGCTC TTTATGTTTG TTTTTTAATG
TCTTTAAATG ACTGTAGGTG TGGGGAAGAG TTGTCTCCTT TTGAGATTTT CTGATGGTTC ATTCACAACC AGTTTTATCA
CCACCATTGG GTTAGTATAA TATCTGCTGA CACCTCTTTT GTTTATCCCT TCTGAAACTT TGTTGTCTTG TTTCCGGATG
CTTACATTTA TCTATTTACT ATTTTGTCTG TAATGCTTCT GTTTCTTCTT TATGGTTTTT GGAAGCATTG CAAGTCGGGA
CCTGATGTCT GGAGCGCATT TAAAAATTAG TGCTTAGTGA ATGTCATTTT TAATATGGAC AATTTTTCGT TGTTGGGGTA
GCTAATTGTC TGTATGTTTA GTCTCTTGTG TACACAAATA TTTGCACACA ACCAAACCTG TATCCTTTTG TTTTTGAAAA
TAAAATTTTG TTATAATAAT CCGTGGCAGC ATCGATTTTA AGATAAGAAC CATTGAACTG GATGGCAAAC GGATTAAGTT
ACAAATCTGG GATACTGCTG GTCAGGAGCG ATTTAGAACT ATTACCACAG GTATGGATTT TGTCTTGTGT AACCTTGCTG
TGAATTCATA ATTGGCAGCT GTCTTCTTGG TAGGTAATTA TATCATGTGT TTACATGCAT TATTGTACAA GTTAGTTGAA
GTAATTTCAT CTTGATAAAA ATGTAAATTT GAAGGAAAAT AATTTTTATA AGTGTTAACG GTAACTCTGT TAAGTTTTGT
GAAGTTATTA TTCATACAAA ATAATTTTTT TGGGTGGAAG TTATACGTTT TGAAGGAATA GTGATTTAAT TCATGGACTC
GTAAATCTAA AGTGCACACT GGCTTGTATT ATACTTTCAT TGAGGGACAC AATGCTTTAA TCTGTCAGGT TCATTTTTTA
CTTGATTTTA AACACTCTGG ATAAATCAAT TTTTACTTCA TGCTCCATAT CTTTGATGAA AGGAAGACTT GTCTTACAAT
GTCACATGCT GTTGCAGCTT ATTACCGAGG AGCCATGGGT ATCTTGCTGG TTTATGATGT TACTGATGAA GCATCTTTCA
ATAGTAATTT CCTTTCCCTG ACCTGATATT TTGGAAGTTA AAAGATATTT CAATGAATGT CATTCTTTTG ATATATTTAC
GCACTACTGT AGACTCATTT CAGCTTTAGT TGACCCAATG AATTGTATTT TCTGTATATT TTCCCCATTT CGTATTTTCC
CTATTTTTCT CCCATTTACA TTTAGCAATT TTGATTTTCA ATGTATCTTG TTTATTATTA TCCAGATATT CGGAATTGGA
TTCGCAATAT TGAACAACAT GCTTCTGACA ATGTAAACAA GATACTTGTT GGCAACAAGG CTGATATGGA TGAAAGTAAA
AGGGTATGTA CATCGTGGTG GGGTACTTTT TTATTTACAT TTTACATCCT TAGTTGGCCA GGGTTTGACA TTAGTTGATT
GAGTAGCTAT TGCATTTTTT ACTCCATGCT TCCCAAGCCG TATTTGTTTA CTGATATGAG ATTAAGTAGT CTCTTTATCT
GCATTTCGAT ACAAACAAAT TTTTTTCCTT TTTATTCTCT AGGCTGTACC TACCTCCAAA GGTCAAGCAC TTGCTGATGA
GTACGGTATC AAGTTCTTTG AAACTGTGAG TGACAATAAC AATTTCATTA CAGTTATGTG TAATTTCATT ACATTTATAT
CAAAGAAAAC ATGCAGAGTG CAAAAACCAA CATGAATGTG GAAGAGGTTT TCTTTTCAAT AGCAAGAGAT ATCAAGCAAA
GGCTTGCAGA CACAGATTCA AGAGCTGAGG TAATTTATCA ACTCTTTTCT CTATGTCCTT TGTTTTTCCT TTTCGTCAGA
GATATGCAGG TGCTCTTTTT TTTCGAAAAA CTAAATTTTT TCCAGTGTGT ACCAACCAAG TACATGAAGA AAAATAATCG
TTAGGAAGTA TTTGGGATTT TCTTTATGCT AAGTTTCAAA ATTAGTGAAT AGTTGTGTGG CGTCTTATGA ATTGCTGAGC
ATTCATACTC TCTTCTCTGT TGATTCAGCC TCAAACCATC AAGATTAACC AACCTGACCA GGCAGCCAGT GGTGGCGACC
CTGCACAAAA GTCGGCTTGC TGCGGTTCAT GAAAAGAATG GTATCTGCAG CAAGTGGTGC AGGTTTCTGC AATAGCACTC
ATCTGGGTGC TAAGGTTATT CTGATGTCAT TATTAGTGGG AGCATGTATT TGACCCTCCG TATCTCCCAA CTGCAGATGT
CGTGTTTTAA AGTTAATATT TTAAATTCTT TGCTCATTGA GTTGGTGGAA TTTATTGTGA CTAGTTAATT TGCTTCATTT
TTCTCTTTCA TTTGTAGTCT GACTCTTAAA AAGGATATCT TGATTAGATG CGGATAGATT ATCACAACAG CTTGATCATT
TGCAAAATGT CGGTCCAAAT GTTTTTGTTG TTGCTGGCTT AGGAATCTAG AGGCAAACCT AAGAATGTTT TTACTTGGAA
GCAAAATGGA AACCCTTGCA GTTTCCATCC GCAATTTTAA TGCCGTAGTG ACTAAATGGT ACAGGGGGTG TAGCATTGCT
TGTATTGCAT GATGATCTTG CAATATTTTC ACCGCCGCGA AATGTTCTGG TTCGGAAGGT GGAGCCAAGT TTTTTGGAAA
AACTTAAAAT ATTTATGCAT GAAAAA

>Vigan.08G012900.01
GGAGAATAGG GTGTGGGCGG GAGCATGAAA GAAGAAGTGT GGTGGCAAAA CGTAACGGGA TGATATGATA GGCGCAGAGA
GAGAAAACGC AAAGACATTT GGTGTTGGAT CCCTTTCCAT GTCGCCCACC GCTTCCTTCT TCTTCTAACC ATTTCCCTTC
CGATCCCTCT TCCGCGCGTT AGGGCATTTT TCTCACTCAG CCATGGCAGC AGCACCCGCC AGAGCTCGTG CCGATTACGA
TTACCTCATC AAGCTCCTTC TTATTGGCGA CAGCGGTGTG GGGAAGAGTT GTCTCCTTTT GAGATTTTCT GATGGTTCAT
TCACAACCAG TTTTATCACC ACCATTGGCA TCGATTTTAA GATAAGAACC ATTGAACTGG ATGGCAAACG GATTAAGTTA
CAAATCTGGG ATACTGCTGG TCAGGAGCGA TTTAGAACTA TTACCACAGC TTATTACCGA GGAGCCATGG GTATCTTGCT
GGTTTATGAT GTTACTGATG AAGCATCTTT CAATAATATT CGGAATTGGA TTCGCAATAT TGAACAACAT GCTTCTGACA
ATGTAAACAA GATACTTGTT GGCAACAAGG CTGATATGGA TGAAAGTAAA AGGGCTGTAC CTACCTCCAA AGGTCAAGCA
CTTGCTGATG AGTACGGTAT CAAGTTCTTT GAAACTAGTG CAAAAACCAA CATGAATGTG GAAGAGGTTT TCTTTTCAAT
AGCAAGAGAT ATCAAGCAAA GGCTTGCAGA CACAGATTCA AGAGCTGAGG TAATTTATCA ACTCTTTTCT CTATGTCCTT
TGTTTTTCCT TTTCGTCAGA GATATGCAGG TGCTCTTTTT TTTCGAAAAA CTAAATTTTT TCCAGTGTGT ACCAACCAAG
TACATGAAGA AAAATAATCG TTAGGAAGTA TTTGGGATTT TCTTTATGCT AAGTTTCAAA ATTAGTGAAT AGTTGTGTGG
CGTCTTATGA ATTGCTGAGC ATTCATACTC TCTTCTCTGT TGATTCAGCC TCAAACCATC AAGATTAACC AACCTGACCA
GGCAGCCAGT GGTGGCGACC CTGCACAAAA GTCGGCTTGC TGCGGTTCAT GAAAAGAATG GTATCTGCAG CAAGTGGTGC
AGGTTTCTGC AATAGCACTC ATCTGGGTGC TAAGGTTATT CTGATGTCAT TATTAGTGGG AGCATGTATT TGACCCTCCG
TATCTCCCAA CTGCAGATGT CGTGTTTTAA AGTTAATATT TTAAATTCTT TGCTCATTGA GTTGGTGGAA TTTATTGTGA
CTAGTTAATT TGCTTCATTT TTCTCTTTCA TTTGTAGTCT GACTCTTAAA AAGGATATCT TGATTAGATG CGGATAGATT
ATCACAACAG CTTGATCATT TGCAAAATGT CGGTCCAAAT GTTTTTGTTG TTGCTGGCTT AGGAATCTAG AGGCAAACCT
AAGAATGTTT TTACTTGGAA GCAAAATGGA AACCCTTGCA GTTTCCATCC GCAATTTTAA TGCCGTAGTG ACTAAATGGT
ACAGGGGGTG TAGCATTGCT TGTATTGCAT GATGATCTTG CAATATTTTC ACCGCCGCGA AATGTTCTGG TTCGGAAGGT
GGAGCCAAGT TTTTTGGAAA AACTTAAAAT ATTTATGCAT GAAAAA

>Vigan.08G012900.01
ATGGCAGCAG CACCCGCCAG AGCTCGTGCC GATTACGATT ACCTCATCAA GCTCCTTCTT ATTGGCGACA GCGGTGTGGG
GAAGAGTTGT CTCCTTTTGA GATTTTCTGA TGGTTCATTC ACAACCAGTT TTATCACCAC CATTGGCATC GATTTTAAGA
TAAGAACCAT TGAACTGGAT GGCAAACGGA TTAAGTTACA AATCTGGGAT ACTGCTGGTC AGGAGCGATT TAGAACTATT
ACCACAGCTT ATTACCGAGG AGCCATGGGT ATCTTGCTGG TTTATGATGT TACTGATGAA GCATCTTTCA ATAATATTCG
GAATTGGATT CGCAATATTG AACAACATGC TTCTGACAAT GTAAACAAGA TACTTGTTGG CAACAAGGCT GATATGGATG
AAAGTAAAAG GGCTGTACCT ACCTCCAAAG GTCAAGCACT TGCTGATGAG TACGGTATCA AGTTCTTTGA AACTAGTGCA
AAAACCAACA TGAATGTGGA AGAGGTTTTC TTTTCAATAG CAAGAGATAT CAAGCAAAGG CTTGCAGACA CAGATTCAAG
AGCTGAGGTA ATTTATCAAC TCTTTTCTCT ATGTCCTTTG TTTTTCCTTT TCGTCAGAGA TATGCAGGTG CTCTTTTTTT
TCGAAAAACT AAATTTTTTC CAGTGTGTAC CAACCAAGTA CATGAAGAAA AATAATCGTT AG

>Vigan.08G012900.01
MAAAPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI
TTAYYRGAMG ILLVYDVTDE ASFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA
KTNMNVEEVF FSIARDIKQR LADTDSRAEV IYQLFSLCPL FFLFVRDMQV LFFFEKLNFF QCVPTKYMKK NNR*