GBrowse Details

Vigan.08G003600.01

Basic Information:
Name: Vigan.08G003600.01
Multiple alignment
Variant Information
Position: Chr08:225892..231630 (+ strand)
Length: 5739
Functional Information:
Description: Similar to Uncharacterized protein. [I1LFK3, Glycine max]
GO: Molecular Function: RNA binding (GO:0003723)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Zinc finger, CCCH-type (IPR000571)
K Homology domain (IPR004087)
K Homology domain, type 1 (IPR004088)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:104.70,85.47,20.08,28.44,21.11,33.89,16.59,17.50
Structure :
Position: Chr08:225892..226115 (+ strand)
Length: 224
Type: five_prime_UTR
Position: Chr08:226116..226188 (+ strand)
Length: 73
Type: CDS
Position: Chr08:226638..226698 (+ strand)
Length: 61
Type: CDS
Position: Chr08:230558..231320 (+ strand)
Length: 763
Type: CDS
Position: Chr08:231321..231630 (+ strand)
Length: 310
Type: three_prime_UTR

>Vigan.08G003600.01 class=Sequence position=Chr08:225892..231630 (+ strand)
TGAGATAAGA AAGAGATAGG GCATGATGTC CATAGATCTA AGATGATATA TATACAGGCG GAAGAGAGAG AATGAGATGA
GGTAGAGAAG ATATACGTAG CCTATTCTTT GATGCTAGTG CTCTTGCTCT TGCTCTTGCA CTGCCACATC CAAAAATATT
AGGGTTAGGG TTTCAGCTCA AACCAACTGT CAGTGGATTT ATTCTCTGTT GCTTTTGCGT TTCCATGGAT CATCGCAAGA
GGGGGAGGTC TGAAGCTGCC TTCAATGTCA ATGGCGCCGC CAAGAAATTC AGACCAGGTT TGCTTTTATT CTTTCATTAC
TTACCGTCTT CTCCTTTTCG TTCTGCTTAC GACTTACGCA CAGTTCCGAT TTGTTTTCAC TTTTATCGGC TCTTTTTCTC
TTTAACTGTT CTTTTTGTTT TCATCTGCGC GAAAAATGAT TAACAATGGA AGAGCGACGA AAAACAGTTA AAACTCCGTG
TTCTCTTTCA CCGTACAGAT GCAGTTTTGT AAATATTTTA CCTTTCCATA TTATCACATC AATTTACCTT TTGTCGTGGT
AATATGTATG AAATGTTGAA TTATTTTCTC GGGCACCTTC TCCGAAAACA CTCGGTATAA GTTCGCTTAA ATGAGCTGAT
ATTGGTCAAA TAAGAAGAAG AAATAGTTAT TGGATGTTAT CCAAGTTGAA TCATAAAAGA TCAATGGAAT CTTAACTGAG
AGAACTTAAT TAATGTTTTG TAACAGAAAC GGACTCCTTT CCAACTGGTT TAGGAAGCAA ATCGAAGCCA TGCACAAAGT
TTTTCAGGTT CAAATCTTTA ACTTATCTAA AATAAAAATT TAATGCACTT TCGTATATGT ATAAATTTTA TAATGTTTTA
GATAAAATTG GTACACAATC TCTTCAAGCT GAATCCATAT GATCTGACTA ATGAATTGGG TAGTTAAAGC TGTGATACAG
GTTCTACTTC TAATTATGAT AACAAGACTA TGAACAGAAA TTGTTGATTC CCAAGAATGA TCAGTTCTAT TAAGTGCTTC
CTGGGCAATA TATAATTGAA AGCAGTTCTA TGGGATGCAT AACTTGATCT ACGTAATTGG TCGTATACAA TTTTCTGCAA
TCTTTTCAAG TAAATGGGTG TGATGCCAAC CACTGAAATG GCTAGAGCAG TACAGGGCCT AAGACATATA TATCTATCAA
TACTCCAAAA CATTAGTGGA TGGAATGGTG CTTAAAAGCA TTTACGACAC TCTTCTTTCT TATTTTTGTA TGGAATTTTG
AATTACCTGG TGTTCAATTG ATCTCTATGA TACAATGGTT CTTACGTTGA TTATACTGCT TAGCTGATAT ATGCTATTGT
ACAATTGTTT GGTATATTAC TCTCCAAGCT GATATCTGCT GTATTTTTGT CGCCTTATTT ATATTGAAGT CTGAAGATTT
CCATTCGATT CTGAATGCAT CAATTTGAAG ATTAGCCATG GCTTGGAAAA GTAATGGCTA AATTGAAAGA AAGGATATTG
AGCTACAAGG ACAAAATAAT AGAGTTTGTA ACCATGGAAA CTGGAAAGGC TTTAAAGTTT TAGGAAGAGC ATAGTGATAA
TTTGAAATTA TTGAAGTTTT TACTTCTGTT GAATATAATC ATTCTGCTTA AGAGCCTGGT ACCTCACCAG CTTATAGTCC
CACAAACAAT ATTCTGGTTG TTCCATGGGT GACTAATAAT ATATATTGGA TTCTCTTCAC CCTTGCAGAT ATACAAAAAT
CATAACATCT TCCATTAGCA ATTATTTTCT TTTGCAAATC TCCCCAACTC TTTTGCCAAA TAGGACTTTA AATTCACTGC
AAGGTATTGT ACCTTCAGAT TTTCCATTAA CTTAGCTTAA ACATCTTTTC TAGGATGGCA TAGCTGTTGT CATGTATTTA
TTGTAAATCC TATTCAATCA GAATTCTTCC TTGTGCAGAC CAGTCACATT CTTTGTCCCT TCCTCTCTTT CATTTGCTGT
GGAATCGAAA ACAATCTTTT GTTGTATTCT TAGTTTGTCA GTTTTAATGG CATTTTTGTC AACTTATATT AATTTAATTT
TAATTCTTTT TTATGGCTAA AAATTTCTTT CTATAACTGT TTGTTAGCTG ATTGGAATCT TGATTCAGAT AGATTTAATC
TGTTTATGTT TAGCGTTAGT GCTAGTTGCA TCGTCTTGAT TCTTAATCAG TAACTATTAC GTAGAAGTTT GACATCCTTC
TCTTGCTTGA CAGTAAGCAA GGTAAGCTAT GTTCATGACT TGATAGTGAA TTTTTTGCTT GATAATTTGC AATATCTTTC
ACCCATCTGT GCTAGGAAGC GGCCCCTGCT GATGGGAGCT TAATACATGT TTTTAGTTCC TTATATGATA CATATTCTGC
ACCTGATTTT TTTACAAAAA TATATATTTT ACAATATGTA CGAACATTTG TTAAATATTA GGATTAAGCC TTATACCTGT
TTTTTTTTTC GGCTCAAGGT TTGATTTTTC GTAGTCTTTA CTTGTGATTT TATTGTTATC TCTGGCTTGA AACATGGAGA
GATTATGGGT TTGTACCTGG TGGTTTGTTT TCAGCTAATG CTTTCAATTT TTTTAGTCTT AGTTGATAAA ATCCTATAAT
GATAAGGAAG TGGGTCATTC TTGAACCTTG AGTTATTCAA TCAACCTTTT TTATCACTAT CGGTTTGCAT ATTATGCTGA
CATTTACTTT AAACTGAGGG AGCCGCTGAT TTGCAATGTT TCACGTTTTG GATTTCTGTT CAAGTTCATT GTCATTCCTG
ATTTATACTG GTGATTATCT CTATTTGAAT TGAAGATGGA GCTTTACTGA TATCTGTATT TATGAACCAT TAAAAATTGT
GATGTTGTCA TCCTTTCTCA TTTGCTCTCT TCCTTAGAAG ATACAGATAA ATGCTGGGAG TGTTTGTCAA TTGTCTAGCA
AGTTAGGACC CTTGAATGCG TTGGTAGTCT ATAATATTGT ATATGATTGC TTGTTTACAT TAGGAGTGTG ATTGCCGGCC
CTATGCTTGG TTAGAAATGG AGGAGGGAGA TAGGATACAA ATATCCAATT TCCACTATTT GTAAATTCAT CTTTTTTTAA
GTTTTCTCTT GTAAATTTGT CTTCATGTGT CTATGTTCTG CTTGTGTTTT TAATCTGTGT TTTTATCTAT TTTTACTCGT
GAGTTTTCCC CTCTCTTGTT TTCTCTGTTC CATGTGTCTA TGTTCTGCTT GTCCTGTCTC TGGTCTGATT TCTTAGGTCT
CCACTCACAT ATCCTCATTA ATCTGTGCTT TTATCTGTTT ACCCTGGGGT TTTTCGCCCC TCTTGTTTTC TTTGCTCCAT
TAGTCTGTGT TCTCTGTTTA GTTTCTCTCT AATATGAGTG TTAGTTATGT ACTTTTGGTC ATATCTACTC CCGGAAACCC
AAATTATTCA TTCCTTTTTC TCCATTTATT GGTAGTCAGC CATAACATTT TTGTTACTAA TTTTCTTGGA TGATTGCTTA
AGGGATGAGA CCTATAACTT CTTATTGTTA ATTGTGAACA TCTCAAGATT TGAGTATTTT GAAAATTTAT ATGTATTTAG
TATGAATTAT ATAAAATGTA TGAGAAACGT TAAAAATACA AGTCATGTTG CTATGCACCG TAATGTTTTT GTGTTTTTGG
GGACAACTGT ACGGTTTACT TCCTGGACTG GTAGTTGTGT CCTCTCTCGA ATCTGAACGG CTGCTTCTAA TTCAGTCTAA
AGTGACCACG GTTAATGCAT ATTTATGTTG TTCCTTGTTG AAAGAATATC AGATAGACAT TACAAGTTAC AATAGAAAAT
TGATGTATGT GAAAATTACT TACGAAGAAG GAACAAGACT ATTTTCGTAA AACTCATGTG ACTGTGTCAC ATGGATCCTA
GATTTTCGAT TATCTTTTGT TAATGTGTAT TCTTAATGTT CGTTCAATTG GGAATTTGAT GTTTGTAGCC CCTCTATGTT
TGTTGCCTCT ACTATGAGAA ATCAGATTGA GCATTGTTGA TTGCTGAATC TTATTATTTT AGACTTCAAA ATGATTTATA
GTTTCTATAT TACTGTGAAT TAGATATGCC ATTCTGTAGT TTGTTTCGTA TGTTTTCTCC CATAATATGT GCTCAAATTT
CTAATCTTAT TTGTACTTGA TTATAATGCT CCTAGCACTA TTCTCTTATT TTGTCTTTAG AATAATTTGT CAGCTTACTT
ATGAAATACT TTACCAGTCT GAACCTGCTT TTTCCCCCCT GTACTGTCTT TGGGTATTCA ATATTTGTTG TTACTTCGGT
CATCCATCAT TAGTATTTGC ACTGCTAAGA ATTCCCAGAT AACGTTATAT TGTATTTGCT TAGCTAGAGG AAGATGTTCT
TAATTATGAA AATAAAGAAA AAAGGCATTA GTTTTGTAAG GGAAAGCATT CTTGATACAT TTTAAATGAA TCATCTTAAT
TCTTAAACGA TGCTACTTTT GTGTATATTA TTTGTCTGTC ACTTTTTCGG CTAATTTTCA GTTCATACTT CGTAGAGTGA
ATTAGTATTT CACTTAGGTC CCACCTCTAC CTGTATAAGC TTTGGAATCT TACTAGTTGG ATATGTTATT AACCTCTTAT
GTCATCTTCT TTCCTCTATA ATGCAGCACC TCTGGCTGTC CATTTGGTGA AGGATGTCAT TTCCTGCATT ATGTTCCTGG
TGGCTTCAAA GCAGTCTCTC AGCTGATCAA TGTTGGGAAC GATCCTGGTA TTCCTCATGT TGGTAGAAAT CCTATTCCAC
CATCCTTCCC TGATGGGTCT TCTCCTCCGG TTGTTAAAAC CCGATTGTGC AACAAGTTTA ATACCGCTGA GGGTTGCAAA
TTTGGTGACA AGTGTCACTT TGCCCATGGT GAGTGGGAGC TTGGCAGGCC TACGGCTCCA TCATATGAAG ATCCCCGTGT
TATGGGACAA ATGCCAAGCA GCAGGATAGG TGGACGTCTG GAGCCCCAAC TTCCAGCTCA TGGCGCAGCT GCCAGCTTTG
GAGCCTCGGC CACTGCAAAA ATTAGTATCA ATGCCGCACT AGCTGGAGCA GTGATTGGAA AAGGAGGCGT CAACTCAAAG
CAAATTTGTC GTGTAACAGG AGCTAAACTT GCCGTAAGGG ATCATGACAC GGATTCTAAC CTCAGAAACA TCGAGCTTGA
AGGCAGTCTT GATCAGATCA AGCAAGCCAG TGCAATGGTA CACGAACTTA TTTTAAATCT TAGTTCTGCC TCTGGGCCTC
CAATGAAGAC CTTTACTACA CAGACTTCCG CCCCGGCAAG CAACTTCAAG ACCAAGCTCT GCGAAAACTT CGCTAAAGGT
TCCTGCACTT TTGGGGAAAG GTGTCACTTC GCTCATGGAA CTGATGATTT GCGCAAGACT GGAATATGAT AGTGTTTTAA
TATAGCTTAC ATGGTTTTAG CGAGGATTGA ATTGTGCAAA ATTTTCTTGC TTTTCAATTT TTTTTCTCAA TCAGCTTCTA
ATTTGCTACA TCGTAACTAA TGGTGAGTCT TACCACAGCT TCTGAAGTTC GATTGCCTCA CTATCACTAT TTTATATTTC
ATGTTGGCCA CTTCCTTCCA TTATTTGTTG CCACATTAAC TTTTAAAATA CAAAAAATAG AAACACGATC GCTTTCCCTT
TCTCCCCTGT CCAATTTTAC AAACTTTATG TTAGACTCAT GGTTATTATA TTCCCCATC

>Vigan.08G003600.01
TGAGATAAGA AAGAGATAGG GCATGATGTC CATAGATCTA AGATGATATA TATACAGGCG GAAGAGAGAG AATGAGATGA
GGTAGAGAAG ATATACGTAG CCTATTCTTT GATGCTAGTG CTCTTGCTCT TGCTCTTGCA CTGCCACATC CAAAAATATT
AGGGTTAGGG TTTCAGCTCA AACCAACTGT CAGTGGATTT ATTCTCTGTT GCTTTTGCGT TTCCATGGAT CATCGCAAGA
GGGGGAGGTC TGAAGCTGCC TTCAATGTCA ATGGCGCCGC CAAGAAATTC AGACCAGAAA CGGACTCCTT TCCAACTGGT
TTAGGAAGCA AATCGAAGCC ATGCACAAAG TTTTTCAGCA CCTCTGGCTG TCCATTTGGT GAAGGATGTC ATTTCCTGCA
TTATGTTCCT GGTGGCTTCA AAGCAGTCTC TCAGCTGATC AATGTTGGGA ACGATCCTGG TATTCCTCAT GTTGGTAGAA
ATCCTATTCC ACCATCCTTC CCTGATGGGT CTTCTCCTCC GGTTGTTAAA ACCCGATTGT GCAACAAGTT TAATACCGCT
GAGGGTTGCA AATTTGGTGA CAAGTGTCAC TTTGCCCATG GTGAGTGGGA GCTTGGCAGG CCTACGGCTC CATCATATGA
AGATCCCCGT GTTATGGGAC AAATGCCAAG CAGCAGGATA GGTGGACGTC TGGAGCCCCA ACTTCCAGCT CATGGCGCAG
CTGCCAGCTT TGGAGCCTCG GCCACTGCAA AAATTAGTAT CAATGCCGCA CTAGCTGGAG CAGTGATTGG AAAAGGAGGC
GTCAACTCAA AGCAAATTTG TCGTGTAACA GGAGCTAAAC TTGCCGTAAG GGATCATGAC ACGGATTCTA ACCTCAGAAA
CATCGAGCTT GAAGGCAGTC TTGATCAGAT CAAGCAAGCC AGTGCAATGG TACACGAACT TATTTTAAAT CTTAGTTCTG
CCTCTGGGCC TCCAATGAAG ACCTTTACTA CACAGACTTC CGCCCCGGCA AGCAACTTCA AGACCAAGCT CTGCGAAAAC
TTCGCTAAAG GTTCCTGCAC TTTTGGGGAA AGGTGTCACT TCGCTCATGG AACTGATGAT TTGCGCAAGA CTGGAATATG
ATAGTGTTTT AATATAGCTT ACATGGTTTT AGCGAGGATT GAATTGTGCA AAATTTTCTT GCTTTTCAAT TTTTTTTCTC
AATCAGCTTC TAATTTGCTA CATCGTAACT AATGGTGAGT CTTACCACAG CTTCTGAAGT TCGATTGCCT CACTATCACT
ATTTTATATT TCATGTTGGC CACTTCCTTC CATTATTTGT TGCCACATTA ACTTTTAAAA TACAAAAAAT AGAAACACGA
TCGCTTTCCC TTTCTCCCCT GTCCAATTTT ACAAACTTTA TGTTAGACTC ATGGTTATTA TATTCCCCAT C

>Vigan.08G003600.01
ATGGATCATC GCAAGAGGGG GAGGTCTGAA GCTGCCTTCA ATGTCAATGG CGCCGCCAAG AAATTCAGAC CAGAAACGGA
CTCCTTTCCA ACTGGTTTAG GAAGCAAATC GAAGCCATGC ACAAAGTTTT TCAGCACCTC TGGCTGTCCA TTTGGTGAAG
GATGTCATTT CCTGCATTAT GTTCCTGGTG GCTTCAAAGC AGTCTCTCAG CTGATCAATG TTGGGAACGA TCCTGGTATT
CCTCATGTTG GTAGAAATCC TATTCCACCA TCCTTCCCTG ATGGGTCTTC TCCTCCGGTT GTTAAAACCC GATTGTGCAA
CAAGTTTAAT ACCGCTGAGG GTTGCAAATT TGGTGACAAG TGTCACTTTG CCCATGGTGA GTGGGAGCTT GGCAGGCCTA
CGGCTCCATC ATATGAAGAT CCCCGTGTTA TGGGACAAAT GCCAAGCAGC AGGATAGGTG GACGTCTGGA GCCCCAACTT
CCAGCTCATG GCGCAGCTGC CAGCTTTGGA GCCTCGGCCA CTGCAAAAAT TAGTATCAAT GCCGCACTAG CTGGAGCAGT
GATTGGAAAA GGAGGCGTCA ACTCAAAGCA AATTTGTCGT GTAACAGGAG CTAAACTTGC CGTAAGGGAT CATGACACGG
ATTCTAACCT CAGAAACATC GAGCTTGAAG GCAGTCTTGA TCAGATCAAG CAAGCCAGTG CAATGGTACA CGAACTTATT
TTAAATCTTA GTTCTGCCTC TGGGCCTCCA ATGAAGACCT TTACTACACA GACTTCCGCC CCGGCAAGCA ACTTCAAGAC
CAAGCTCTGC GAAAACTTCG CTAAAGGTTC CTGCACTTTT GGGGAAAGGT GTCACTTCGC TCATGGAACT GATGATTTGC
GCAAGACTGG AATATGA

>Vigan.08G003600.01
MDHRKRGRSE AAFNVNGAAK KFRPETDSFP TGLGSKSKPC TKFFSTSGCP FGEGCHFLHY VPGGFKAVSQ LINVGNDPGI
PHVGRNPIPP SFPDGSSPPV VKTRLCNKFN TAEGCKFGDK CHFAHGEWEL GRPTAPSYED PRVMGQMPSS RIGGRLEPQL
PAHGAAASFG ASATAKISIN AALAGAVIGK GGVNSKQICR VTGAKLAVRD HDTDSNLRNI ELEGSLDQIK QASAMVHELI
LNLSSASGPP MKTFTTQTSA PASNFKTKLC ENFAKGSCTF GERCHFAHGT DDLRKTGI*