GBrowse Details

Vigan.07G238000.01

Basic Information:
Name: Vigan.07G238000.01
Multiple alignment
Variant Information
Position: Chr07:32089094..32092277 (+ strand)
Length: 3184
Functional Information:
Description: Similar to Annexin. [V7BSM8, Phaseolus vulgaris]
GO: Molecular Function: calcium ion binding (GO:0005509)
Molecular Function: calcium-dependent phospholipid binding (GO:0005544)
InterPro: Annexin (IPR001464)
Annexin, plant (IPR009118)
Annexin repeat, conserved site (IPR018252)
Annexin repeat (IPR018502)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.47,5.64,28.98,0.07,112.29,717.11,27.88,0.96
Automatic updates:
Name: NM_001255242 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max annexin-like protein RJ4-like (LOC100806472), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:32089094..32089422 (+ strand)
Length: 329
Type: five_prime_UTR
Position: Chr07:32089423..32089495 (+ strand)
Length: 73
Type: CDS
Position: Chr07:32090704..32090849 (+ strand)
Length: 146
Type: CDS
Position: Chr07:32090964..32091182 (+ strand)
Length: 219
Type: CDS
Position: Chr07:32091277..32091489 (+ strand)
Length: 213
Type: CDS
Position: Chr07:32091618..32091707 (+ strand)
Length: 90
Type: CDS
Position: Chr07:32091846..32092049 (+ strand)
Length: 204
Type: CDS
Position: Chr07:32092050..32092277 (+ strand)
Length: 228
Type: three_prime_UTR

>Vigan.07G238000.01 class=Sequence position=Chr07:32089094..32092277 (+ strand)
CAAAATCTCA CCTCAGGCTA TGTAAATTCA TAATTGACGC TTCATACGCA TTTTACTAGC AAACAAGTCT CAGCTACTGC
AGCCAGCTCC TTTACATAAC TTTATTTGTA ATGCTTATTA TTCTTTCCCT TTCTTCACTT TGTTTCTTAA CGCATTAAAA
GATGCTTATT GAAGAAAGTG CACTCAAACG TATACTTAGA AACATGTAAT ATTGTGAAGG CGATAACTCC AAGGGAGCCA
TTCCTTCTAT AAATTGAGAT CAGAGCAAAT GTGCATTCTC ACATCACACA CACATAGTTA CTTTCAGAGT GTTAGAAAAG
GTTATTCCAA TGGCCACTCT TGTTCTTCAT CATCAAACTT CTCCTGCTCA AGATGCTGAG GCTCTTCATC AAGCTTTCAA
AGGTTTTCAT AAACTTATAC CATTTTAATT ATTTATTACT TTCTCTGTTC ATTGTTAAGG ATTTTTTTAT TACTTATATT
ACACTGTCAT GAACCATTTC AGACATTCTT GATATGCTAA AACTATGGCA GATGTTTTCA TTCCTATTAA TATTTCTTAT
TGTTCTGATT ATTTCTCTTT TAACTTAACA GGGAGAAGAT GATACTCTTT TTGTTGAATA AAAATAAAAG CTTTCTTGAT
TTTTAATTTG ATTTTCTTAA AATTGATTTT CTCTTCTCTG TACCAAATGA TACACCTTGG AATATAAGAG TAAATCATGA
GTTATTCTGT GTACTAGTAA CTTGTGCCAA CCCAGTGAAA AGAAAAAGCT GAGGTACTTG AAGAATGATA ATAATATAAT
ATCTTGAAAA CTATAAAAGA TCAGCATAAA CCTAACCCAT GTTAAATTGT GTATTTTTGC AGTCTTTTTT AGAATAAAGT
CATAAAGACA TGAAAGTTGA TATACATCAT TTTATAATTT TTGTACAAAA TTGTTTTAAT ATTTTTATTG AGTTAAATAA
AGATATGAAT GCACATGCAC ACACATATCT ACTTTATATA TATATATATA TATATATATA TATATATATA TATATATATA
TATATATATA TATATGTATA TATTTTATTA AGTTAATACT ATATGAATGT CATGCACATA TATCTACTTA ATGTTTTATT
ATTTCATATT AGAGATAAAA CAATTGATTT CTTTCTCATT TTGAAAAGCT AAAAAAGTTT TTAAAATTAA AGGAATTATA
GAAATATTAA AAAATTGTCC TGTCCCTGCA GTCTCAAATA ACAAATATAA ATCTGATTAG AATAATATAT TTTATAGAAT
GAAAACACAA TTGATAACAC AATATATTTC CAAGACATTG GTATTATTGA AGACTCTTTA CAAAGATGTA AGAAAAAACA
ACATATAGTC CTTGTTATCA AATACCAATA CAGAAATTGC GTGTCACTAA AAATTCTTTA ATTTTCGTCT GACATGAGAT
ACAAATATAC AATGTGAACA AAATCTTTTT CTTTGACTTT GTTCTAAACA ACAGTCAGTG ACATAATAAT ATAATTTGTT
TTGTTTAATG AGATACAAAG ATAACTGTGA CAAAATGAAT ATGATGACAT GATACTCAAA CCAAACATGA CATTGTTTTT
AATGATTTAG GATGGGGTTC TGATGGCAAG GCTATTATAG CTATACTGGG TCACAGAAAT GTTCATCAGA GACAGGAAAT
CATAAAGGCT TATGAAGAGA TTTACCAAGA GAATCTCATC AAACGCCTTG AGTCAGAGAT CTCTGGTGAT TTTGAGGTAT
AATAACAACA CTATCCCATA TGACTTTAGA GTATCTAAGT AATTTGTTTT TGATAACAAT CATGTGGTTC ATTTATCCTT
ACATTATGAT GAATTGTGTT CATAAATCAG AGAGCTGTGT ATCGGTGGAT GTTGGAGCCT GCAGATCGTG ATGCTGTTTT
GATGAATGTA GCAATAAAAA ATGGTCCAAA AGAGTATAAT GTGATTGCAG AGATTGCTAG TGTTCTTTCA GCTAAAGAAC
TTTTAGCAGT GAGGAGTGCC TATCATGATC GCTACAAACG TTCTTTGGAA GAAGATGTGG CAGCACACAC CACTGGCCAT
CTTCGCCAGG CAAGACATTT TCATACAAAT AATTTGAGTG TTTGAAGTCA CTTAATGAAA TTTTGAATGC TAATGGTCAA
AATCTGTGAT TGGTTTTGAG CAGCTTTTGG TTGGACTGGT GAGCTCATAT AGGTACGAGG GTGATGAGAT CAATGTAAAA
TTGGCACAAA CTGAAGCTAA TATTCTTCAT GAATCAATCA AGGAGAAGAA AGCCAACTAT GAAGAAGTTA CAAGAATTCT
CACCACAAGA AGCAAAACTC AACTTGTTGC AACTTTCAAC CGCTATAGAG ATGAACATGG AATTTCCATC AGTAAGGTAC
TGATAAATGC AATACCCATT ATATATAACT CATTAATTTC TACAAGTTTG ATAGCTAAAT TTGTTTTTCT ATATTTAATT
TATCTTAAAG AATGATTAAA AATAATAGTG TATTTTCTTT GCAGAAATTG GTTGATCAGT CATCTGATGA TTTTGTCAAG
GTATCGCACA CAGTGATTCG TGGCATCAAT GACCACAAAA AGTACTATGA GAAGGTCAGG TTCTCACTTC CCTAAATGCA
AGTTTGAAAA CACAGCATTA AGAAAAAGAC TAACAAATCA GTTTCTTTTC TGTATAAGAA AATAGACATT GTATCATTGT
AATCTGACCC TAAAGTTTTG TATTATGAAT AGGTTTTACG CAATGCAATA AAAAAGTTTG GAACTGATGA GGATGGGTTG
ACTCGTGTGA TTGTAACAAG GGCTGAGAAA GATTTGAAGG ACATCAAAGA GGTGTACTAC AAGAGGAACA GTGTTCATCT
TGAAGATGCT GTGTCCAAGG AAATCTCAGG AGATTACAAG AGGTTCATCC TTGCACTGCT GGGGAAGCAA GACTAAAGAA
CTTGCCCTAA TTAAGGGCAT ACCTAGAAAT AATGAGTTTC TGATGTGTTG CTTCATTAGG TCAGTTTGTG TCTTGTTTGA
GGGCATATGT GCCTTTTCCT TGAGTTATGT GTCAGTACTT TGTTTTTTCT CTTATTTGAC AGCATCTATC TATTCTGTTT
TCCTTTGAGC ATTCCTTTGA GTTATGTTTT CTGTTACTTC ATTTAATAAA AACTCATTAT CAAA

>Vigan.07G238000.01
CAAAATCTCA CCTCAGGCTA TGTAAATTCA TAATTGACGC TTCATACGCA TTTTACTAGC AAACAAGTCT CAGCTACTGC
AGCCAGCTCC TTTACATAAC TTTATTTGTA ATGCTTATTA TTCTTTCCCT TTCTTCACTT TGTTTCTTAA CGCATTAAAA
GATGCTTATT GAAGAAAGTG CACTCAAACG TATACTTAGA AACATGTAAT ATTGTGAAGG CGATAACTCC AAGGGAGCCA
TTCCTTCTAT AAATTGAGAT CAGAGCAAAT GTGCATTCTC ACATCACACA CACATAGTTA CTTTCAGAGT GTTAGAAAAG
GTTATTCCAA TGGCCACTCT TGTTCTTCAT CATCAAACTT CTCCTGCTCA AGATGCTGAG GCTCTTCATC AAGCTTTCAA
AGGATGGGGT TCTGATGGCA AGGCTATTAT AGCTATACTG GGTCACAGAA ATGTTCATCA GAGACAGGAA ATCATAAAGG
CTTATGAAGA GATTTACCAA GAGAATCTCA TCAAACGCCT TGAGTCAGAG ATCTCTGGTG ATTTTGAGAG AGCTGTGTAT
CGGTGGATGT TGGAGCCTGC AGATCGTGAT GCTGTTTTGA TGAATGTAGC AATAAAAAAT GGTCCAAAAG AGTATAATGT
GATTGCAGAG ATTGCTAGTG TTCTTTCAGC TAAAGAACTT TTAGCAGTGA GGAGTGCCTA TCATGATCGC TACAAACGTT
CTTTGGAAGA AGATGTGGCA GCACACACCA CTGGCCATCT TCGCCAGCTT TTGGTTGGAC TGGTGAGCTC ATATAGGTAC
GAGGGTGATG AGATCAATGT AAAATTGGCA CAAACTGAAG CTAATATTCT TCATGAATCA ATCAAGGAGA AGAAAGCCAA
CTATGAAGAA GTTACAAGAA TTCTCACCAC AAGAAGCAAA ACTCAACTTG TTGCAACTTT CAACCGCTAT AGAGATGAAC
ATGGAATTTC CATCAGTAAG AAATTGGTTG ATCAGTCATC TGATGATTTT GTCAAGGTAT CGCACACAGT GATTCGTGGC
ATCAATGACC ACAAAAAGTA CTATGAGAAG GTTTTACGCA ATGCAATAAA AAAGTTTGGA ACTGATGAGG ATGGGTTGAC
TCGTGTGATT GTAACAAGGG CTGAGAAAGA TTTGAAGGAC ATCAAAGAGG TGTACTACAA GAGGAACAGT GTTCATCTTG
AAGATGCTGT GTCCAAGGAA ATCTCAGGAG ATTACAAGAG GTTCATCCTT GCACTGCTGG GGAAGCAAGA CTAAAGAACT
TGCCCTAATT AAGGGCATAC CTAGAAATAA TGAGTTTCTG ATGTGTTGCT TCATTAGGTC AGTTTGTGTC TTGTTTGAGG
GCATATGTGC CTTTTCCTTG AGTTATGTGT CAGTACTTTG TTTTTTCTCT TATTTGACAG CATCTATCTA TTCTGTTTTC
CTTTGAGCAT TCCTTTGAGT TATGTTTTCT GTTACTTCAT TTAATAAAAA CTCATTATCA AA

>Vigan.07G238000.01
ATGGCCACTC TTGTTCTTCA TCATCAAACT TCTCCTGCTC AAGATGCTGA GGCTCTTCAT CAAGCTTTCA AAGGATGGGG
TTCTGATGGC AAGGCTATTA TAGCTATACT GGGTCACAGA AATGTTCATC AGAGACAGGA AATCATAAAG GCTTATGAAG
AGATTTACCA AGAGAATCTC ATCAAACGCC TTGAGTCAGA GATCTCTGGT GATTTTGAGA GAGCTGTGTA TCGGTGGATG
TTGGAGCCTG CAGATCGTGA TGCTGTTTTG ATGAATGTAG CAATAAAAAA TGGTCCAAAA GAGTATAATG TGATTGCAGA
GATTGCTAGT GTTCTTTCAG CTAAAGAACT TTTAGCAGTG AGGAGTGCCT ATCATGATCG CTACAAACGT TCTTTGGAAG
AAGATGTGGC AGCACACACC ACTGGCCATC TTCGCCAGCT TTTGGTTGGA CTGGTGAGCT CATATAGGTA CGAGGGTGAT
GAGATCAATG TAAAATTGGC ACAAACTGAA GCTAATATTC TTCATGAATC AATCAAGGAG AAGAAAGCCA ACTATGAAGA
AGTTACAAGA ATTCTCACCA CAAGAAGCAA AACTCAACTT GTTGCAACTT TCAACCGCTA TAGAGATGAA CATGGAATTT
CCATCAGTAA GAAATTGGTT GATCAGTCAT CTGATGATTT TGTCAAGGTA TCGCACACAG TGATTCGTGG CATCAATGAC
CACAAAAAGT ACTATGAGAA GGTTTTACGC AATGCAATAA AAAAGTTTGG AACTGATGAG GATGGGTTGA CTCGTGTGAT
TGTAACAAGG GCTGAGAAAG ATTTGAAGGA CATCAAAGAG GTGTACTACA AGAGGAACAG TGTTCATCTT GAAGATGCTG
TGTCCAAGGA AATCTCAGGA GATTACAAGA GGTTCATCCT TGCACTGCTG GGGAAGCAAG ACTAA

>Vigan.07G238000.01
MATLVLHHQT SPAQDAEALH QAFKGWGSDG KAIIAILGHR NVHQRQEIIK AYEEIYQENL IKRLESEISG DFERAVYRWM
LEPADRDAVL MNVAIKNGPK EYNVIAEIAS VLSAKELLAV RSAYHDRYKR SLEEDVAAHT TGHLRQLLVG LVSSYRYEGD
EINVKLAQTE ANILHESIKE KKANYEEVTR ILTTRSKTQL VATFNRYRDE HGISISKKLV DQSSDDFVKV SHTVIRGIND
HKKYYEKVLR NAIKKFGTDE DGLTRVIVTR AEKDLKDIKE VYYKRNSVHL EDAVSKEISG DYKRFILALL GKQD*