GBrowse Details

Vigan.07G223300.01

Basic Information:
Name: Vigan.07G223300.01
Multiple alignment
Variant Information
Position: Chr07:30338909..30340648 (- strand)
Length: 1740
Functional Information:
Description: Similar to photosystem II 10 kDa polypeptide, chloroplastic. [XP_008226285.1, Prunus mume]
GO: Biological Process: photosynthesis (GO:0015979)
Cellular Component: photosystem II (GO:0009523)
Cellular Component: photosystem II oxygen evolving complex (GO:0009654)
Cellular Component: thylakoid membrane (GO:0042651)
InterPro: Photosystem II PsbR (IPR006814)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:15.39,23.79,605.89,6817.52,5.33,1978.25,58.66,1007.66
Arabidopsis thaliana homolog: AT1G79040.1
Automatic updates:
Name: NM_001248513 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499745 (LOC100499745), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249290 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305752 (LOC100305752), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:30338909..30339024 (- strand)
Length: 116
Type: three_prime_UTR
Position: Chr07:30339025..30339119 (- strand)
Length: 95
Type: CDS
Position: Chr07:30339450..30339502 (- strand)
Length: 53
Type: CDS
Position: Chr07:30339605..30339660 (- strand)
Length: 56
Type: CDS
Position: Chr07:30340062..30340120 (- strand)
Length: 59
Type: CDS
Position: Chr07:30340210..30340366 (- strand)
Length: 157
Type: CDS
Position: Chr07:30340367..30340648 (- strand)
Length: 282
Type: five_prime_UTR

>Vigan.07G223300.01 class=Sequence position=Chr07:30338909..30340648 (- strand)
TTTTTTTTTC CTATGGGAAT ATCCATCAAT TTTCTTTCAT GAAGATTTTT GTTTGCATAT TTATGATGAT GAACAACAGG
TGAAAAATTG ATCTGATTTC AGATAATGTT CACATTATCA TATCCCTGTG TCTACCACAA ATGAAATGCC ACGTGTGAGA
AAACCAATCA CAAATCCTTG GTCACTATTG TTGTTATTAC TATGAGTGGC ACATGTTTTG TTTCCCATAG CAAAGAAGAA
GAAGCATTTG CAGAAGCAGC AAAACTTAGT CTGAGCTGAA AAATGGCCTC TTCAGTGATG GCATCTGTGG CCCTTAAACC
TGCCCCTTTC ACTGTTGAGA AGTCCTCAGT CAGAGGACTT CCCTCCCTTT CAAGGAACTC CTCTTCATTC AGAGTTGTGG
CCAGTGGTGG CAAGAAGATC AAGACTGACA CGCCCTATGG TTTGATTTCA TGCTTGCCCT TTTGAAAACT CTGAAAAACA
CACACACCCT TTTGTTAATC TTGATGATTT TTGTCTGAAT GTTTGCAGGA ATTAGTGGTG GCATGAACTT GAGGGATGGA
CTTGATGCAT CTGGCAGGAA AGGAAAGGTT TGTGTTTTAA TTAGCCATCT TTGATTGGAT CTTAGAACAT AATTAACACA
TGCTGTTTTG ACTACAAAGT ATTCACAAAA TAAGTAATCT CAGTTGTTTT CAAAAGAAAA TTAACTGAAA TTCAAGTTTC
TGTATGATTT GTTATGTGTA TGACTGATAA GAAAGTTAAC TGATGTGTGT ATCATGATTT GTTATGTATG CGTTTGATTT
TGGTTATTGA TTTTTTTAAT CAGGGACTGA AATTGTTTAC CTCTGTTTAA GATTTTGAAA TTGTTACTTT ATTTCATAAC
TTTAGAGTCT GAATGTCTCT GATAAAGGAA TCTAAAGTTG ATTCGTTGTT TTGAGATTGT TGGTAGTATT TACTGTATTA
TTCTTCTAAC TTTCAAACAT GAATTCAGGG AAAGGGTGTG TACCAATTTG TTGACAAATA CGGTGCTAAT GTTGATGGAT
ACAGGTAATA ATAATAAGAT CTAGATCTAT ATTAATAAAA AATATTTTCA TTCATTTGTG CATTTAAATT TCTATTCTAA
TTGCATTTGC CTGAGTTATT ATGCAGTCCT ATCTATGACA CAAAGGACTG GTCCCCAACC GGTGATGTCT ACGCTGGAGG
TAAGAAACAT GATGACATTC AAGAAAAATT AGCATGAAAA AGAAGAAAAA AAAAAGTTCT AATCTACATA TGAAATTATT
TTCACTCATT ATTCATTGGA ATATATTCCT CTAAAGCAAT ATATATATAT ATTATAAATT ATGAAAATGA GTACCCTTAT
TCTTAAGTTG TTGAATTTAG AGAATCCTTG TGCTTTCTTA TTCATATGTG TTTCCACATC ACAGGAAGAG TGGTTTATCA
TTATAGTAAG TTTTTCATGT GATGAATAGA TATTTTTGAG AATAAAAGTT GAAAGTGAAA GATGTTGTGT TGGTGTTTTT
ATGATGCAGG TACGACTGGT TTGGCTATCT GGGCTGTAAC TCTACTTGGT CTGCTAGCTG GTGGTGTACT TCTTGTCTAC
AACACAAGTG CTTTGGCACA ATAGACTTTG CAGATCCATG TTTATTTTAC AACTTAGTGC ATGTACCTAT TTAAACTTCA
AGAATACTTC ATCAACTACT TTGTGGATAT GTGATATTCC TTCTGTTCTA TAAATGCTTG 

>Vigan.07G223300.01
TTTTTTTTTC CTATGGGAAT ATCCATCAAT TTTCTTTCAT GAAGATTTTT GTTTGCATAT TTATGATGAT GAACAACAGG
TGAAAAATTG ATCTGATTTC AGATAATGTT CACATTATCA TATCCCTGTG TCTACCACAA ATGAAATGCC ACGTGTGAGA
AAACCAATCA CAAATCCTTG GTCACTATTG TTGTTATTAC TATGAGTGGC ACATGTTTTG TTTCCCATAG CAAAGAAGAA
GAAGCATTTG CAGAAGCAGC AAAACTTAGT CTGAGCTGAA AAATGGCCTC TTCAGTGATG GCATCTGTGG CCCTTAAACC
TGCCCCTTTC ACTGTTGAGA AGTCCTCAGT CAGAGGACTT CCCTCCCTTT CAAGGAACTC CTCTTCATTC AGAGTTGTGG
CCAGTGGTGG CAAGAAGATC AAGACTGACA CGCCCTATGG AATTAGTGGT GGCATGAACT TGAGGGATGG ACTTGATGCA
TCTGGCAGGA AAGGAAAGGG AAAGGGTGTG TACCAATTTG TTGACAAATA CGGTGCTAAT GTTGATGGAT ACAGTCCTAT
CTATGACACA AAGGACTGGT CCCCAACCGG TGATGTCTAC GCTGGAGGTA CGACTGGTTT GGCTATCTGG GCTGTAACTC
TACTTGGTCT GCTAGCTGGT GGTGTACTTC TTGTCTACAA CACAAGTGCT TTGGCACAAT AGACTTTGCA GATCCATGTT
TATTTTACAA CTTAGTGCAT GTACCTATTT AAACTTCAAG AATACTTCAT CAACTACTTT GTGGATATGT GATATTCCTT
CTGTTCTATA AATGCTTG

>Vigan.07G223300.01
ATGGCCTCTT CAGTGATGGC ATCTGTGGCC CTTAAACCTG CCCCTTTCAC TGTTGAGAAG TCCTCAGTCA GAGGACTTCC
CTCCCTTTCA AGGAACTCCT CTTCATTCAG AGTTGTGGCC AGTGGTGGCA AGAAGATCAA GACTGACACG CCCTATGGAA
TTAGTGGTGG CATGAACTTG AGGGATGGAC TTGATGCATC TGGCAGGAAA GGAAAGGGAA AGGGTGTGTA CCAATTTGTT
GACAAATACG GTGCTAATGT TGATGGATAC AGTCCTATCT ATGACACAAA GGACTGGTCC CCAACCGGTG ATGTCTACGC
TGGAGGTACG ACTGGTTTGG CTATCTGGGC TGTAACTCTA CTTGGTCTGC TAGCTGGTGG TGTACTTCTT GTCTACAACA
CAAGTGCTTT GGCACAATAG 

>Vigan.07G223300.01
MASSVMASVA LKPAPFTVEK SSVRGLPSLS RNSSSFRVVA SGGKKIKTDT PYGISGGMNL RDGLDASGRK GKGKGVYQFV
DKYGANVDGY SPIYDTKDWS PTGDVYAGGT TGLAIWAVTL LGLLAGGVLL VYNTSALAQ*