GBrowse Details

Vigan.07G221100.01

Basic Information:
Name: Vigan.07G221100.01
Multiple alignment
Variant Information
Position: Chr07:30116084..30120673 (- strand)
Length: 4590
Functional Information:
Description: Similar to Uncharacterized protein. [C6SXX2, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Ubiquitin domain (IPR000626)
Ubiquitin conserved site (IPR019954)
Ubiquitin (IPR019956)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:44.09,36.52,94.38,73.61,101.66,176.65,87.59,90.09
Arabidopsis thaliana homolog: AT1G31340.1
Automatic updates:
Name: NM_001289313 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ubiquitin-NEDD8-like protein RUB1-like (LOC100800163), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:30116084..30116508 (- strand)
Length: 425
Type: three_prime_UTR
Position: Chr07:30116509..30116620 (- strand)
Length: 112
Type: CDS
Position: Chr07:30117194..30117453 (- strand)
Length: 260
Type: CDS
Position: Chr07:30120283..30120375 (- strand)
Length: 93
Type: CDS
Position: Chr07:30120376..30120673 (- strand)
Length: 298
Type: five_prime_UTR

>Vigan.07G221100.01 class=Sequence position=Chr07:30116084..30120673 (- strand)
TATAAATTTA AAATACAAAT AAAAACCAAA TAGTAGAAAA ATTATAGGGT TTCTATAACT CAACTAAATA AGCTTGAAGG
AATGGATAGT GTAAAAGTGT GAAAAAGGTA AGTTCAACAA TTGGAGAGCT TCCAAACACT ATAATTGAAG ATCCAAATCT
CCTTACTGTT TCTGCTAGTC ATCACACAAC AAACATTGCT TACAACCTAC GAACTACAAA TACCCCCTTT CAGAGGCAGA
ATCCAAACAA TCTCTCACTC TCATTTTCTC TCCCACACTC TCTCTCCCAT CCATCAACAT GCAGATCTTC GTCAAGACTT
TGACCGGAAA GACCATCACG CTGGAGGTCG AGAGCAGCGA CACCATTGAC AACGTCAAAG CCAAGATCCA GGTTATCTCT
CTCTCTGACT TTCTTTCCTT GATAACAGCT TTTTGATTCC GTTCACCTAG GGTTTTACGA CCTTTGTTCA TCCATTCTTC
TGCGTTTCTT TTTCTCTCAT TCAATTCCAG GGTTTCTAAT TGTTTCGGAC CTTATGCGAG GTCTAGAGTT GAATTATGCG
TACTATTGGA TTAGTTTATT CTATAAATGG TTTTGTTACT GGGTTGATTT ATGTCTGCAT AATATATATG TTTTAGAAAC
TGTTTGATTT AGTCCGTGGT CCGTTGTTAG AATGAAAATA GTTAAATTCA AAATTGCGTG CAGGAGCACA TGTTAAAAAG
TTTCTGTAAA ACTAAAACCT GAAGGTTATG TAAGGAATAA CTAAGAAGCA CGAGTGATTA AGCCTTTAAA CAGTTCTGGG
TAAGGATTGT ATGACACTTG TTGTATTGTG TCTGCAAAAG TTTGAAGTTG AATGACACAT TATATTTGTT TGTTGATTTC
TGTTGCTATG GATATTATTT ATAGGCTTGT AATAATCTAG GATTACTAGG GGTTGATATA TTTGATACTC AACTATAAGC
AAACTTTCAC ACTACTAATT TATATAGTCT GGAATACTCG TCAGAATCAC CCTGGAATTA TCTCTTTTGT AACCAGATTT
CAGTAATAGG TTCTCTGATA CACTTTAGTC GACTTAGATG TGTAATTAAA TTGTTCTGCG TGTTTCCTCT CTTTGTTGTT
GCATTTGACA AATTTGGCTA GTATGTAATA CTCTGCATAA GGCTGGACAT GTCTGGACTT GGATTTAGTA TGTAAAGCTG
AACTGCTAAT ATGGTGTGGT TTTCAAGACT GAATCTGATG AATTGTTGGC AAATGAGTTT TGGTTTTCAA GACTGAATCT
GACTCAAAAC CAGTATTGAG TTAGTGAAGA ACTTTTTATT CTTTTACTTG TGAATGATTT AAAAGTATGA AAAGCCCACC
AAAGGGACAA ATTTCAGAGT TTAATTGAAG ATAGAAAGAA TAAAAAAACA TAGGACTTAA TAATAGTTTA GATGAAATGC
ACTTCACGAA GATTTAAAAG TTTTAAGCCC CTGTATCCAT TTCAAACCCA TTCAAAATTG ATTATGAACC CTTGAATCTG
TTTTTGTTCT ATATACTGGG TTTATACCAG TTTACAGCTG ATTTAGAAGT ACTTTGCATC CTGTTATCTA TTTTATAGTT
TGCAAGACCC AAAGAGGTTG CAATTAGTCT ATACCTATTC TCCAACTCTA GAAAGACTTT CATTTTCTTC ACTTGAGCAT
TGCCTTTTCA GAATGTGGAC TAACCAGGCT GAAGAAAGAT GACATATAGA GCTATTTTTT ATTGTTGACA TGATCATTGA
AATAGTAACA GTATGACATG ACAAAAAATG GTTCTTAATA CTATAAATAT AAATCAAATA GTAATCTAGT TTGTTGTTAG
TTTTAAGTAA CTAGGTCAGA TCAATAAGGG TCTTTTAAAA CTTATTCTTT TTAGTTTCTA GCTACGCAGT ACACTATATA
TTCATATACA AACTTTGTAC AACATTTCCA TATTGCATTT ATATATTCAT TCCATTATTT CAACCATAAT TATATTCCTA
AAAAAAACCA GTCTGAATGG TTACACAGAA TCTGCAGTCA AATAATATAT TGAAATTCAT AACCAAATGC ATGTAGCAAA
ATTACTTTGA CTAAAGTGGT CGGAAATAAT GATGTTTTTG TGAACATTTA ATCTTACAAC AGAAGCATTC TGAAAATCTA
GACTGAAGAG GGATAAATAG AGTATTACGT TAATCCAATT GGACAGTTTT ATTTATAAAG GCTTCATGGT ATCAAATATA
AGAGACTTAT ATTTAATCCT ATCCAATGAA AAAGCTATTC ATTTGTTTTA ATAAGTGTTG TGAAACTTGA CCTGGTTGAG
GCAATGGGTT AATGAGTTAG AGGTTGGACT GTTTGGCCTG GCTAGGTCAC CCAGGTTGTA TATATTTGTG GGCCCAAGTT
CAGTCAACCA GTCTGGTCAA CGGTTTCTGG TTAAACTCGG TGGATCGGCT AGGCCAAACT GGATTTTACA ACATAGTTTT
AAAATAATAG ACTTCTAGTA AATGAATATA TTTTATTATA ATTATATATG ACATGAAATA CATATATGCT TTTTGTAAGT
TAATTTTAAT ATTTTAATTC AAAGTGTTTA TTTTCGTATA ACATAACTCA TGTGATGCAT ATACCAGTTC TATGATTGTA
TTTACAATTT TAACTTTTTA TTATACATGT AATATCGACC AATAATTGCA TGATTTGTAT AATGATATGC TTACATGTTT
AATTCCTTCT ATGATTTAGA TTTTAATACA ATGTTATCTG AAGCTTTTCA TTGCTAACCT AGTTGAATAA ATAGACATTT
TAAAAAGTTT TGCTTATATG TATTGATATT GGATTTATCA ACTATAACTT ATCTGGGAAT AGTAGTCTTT TGGGCTTGAG
ATATATGTGC ACCAACAAAG ATTTTTCGGG ATGATTTGCC TTAATCTTTT CTTTCTTTCA GTCATTGACT GACAGGCATG
ACCGTGGAAC TTTTGTCCTT CCACTCATCA GCAACAACAT TAATCATGCT TTTGGCTTAA TCTTTTACCC TTGCTCGTTC
CATTTCCAGT GTTCTGCCTT ATGTACTGAT AAACTCGTCT TAACTGGACC GAAAAATACT TGATAGTCAT GTATTGCAGA
GATATAGGTT CAAATACCCT TGAGCTGCTC TTCCAAAGGG AGCCTTTATG TGAGTTACAC AATCAGTTTC TAATAACTTT
GGGTGGAATA CATTTTGTAG GACAAGGAAG GTATCCCTCC TGACCAGCAG AGGTTGATTT TTGCTGGTAA GCAACTGGAA
GATGGTCGCA CACTTGCTGA TTATAACATA CAAAAGGAAT CTACCCTTCA CTTGGTCTTG AGGCTCAGAG GAGGAACCAT
GATTAAAGTG AAGACTTTGA CTGGAAAAGA AATTGAAATC GACATTGAGC CAACTGATAC GATTGACCGG ATCAAGGAAC
GTGTAGAAGA AAAGGAAGGA ATTCCACCTG TGCAGCAGAG GTTTTATCTG TTTTTGTATT AATTGAGTTT AGCTGCCTTT
GCTAATTCAA CAGCACATGA TTTAACTGTT ACATGGAAAT GTGCATTTCA CTCGTTAACC ACAAAAAGCT TTTGTTTCTG
ATCATATTTT TGAAGAATTA CCTGTCAATT ATTTTTATAA ATAAACATAG ATATAAGTTC TATGCATGTA GATATCATTG
ATTCAATATC TTGGTGTACA TTATTTCGAG CTTCCTGTTA TAGGGTTATA ATTACCTGTC AATTATTTTT ATAAAAGAAC
ATAGATATAA GTTCCATGGA TGTAGATATC ATCGATCCAA TATCTTGAGC TTCCTGTTGT AGGGTTATGA TTGGCAATCA
TATGGTCTTT TGAAATAGAT TTATAAGCAA TATATTGCCA CTGTGATGAA ACGATAGAAA TTGAAAAAAT TATATGGCTT
CTTTCTTTTG GGATTTTTAA TAAAATTCAT TTATCACTCA GTTTATATGT TGTGTATATT CTTAAATATG ATTTCTGGAC
ACCAATGTTG GTATTGGAAA CACTAGAATC TTATGATTTG TATTTTGCTG CAGACTCATA TATGCAGGTA AGCAGCTTGC
TGACGACAAA ACAGCCAAAG AGTACAACAT TGAGGGTGGT TCAGTACTTC ATTTGGTGCT TGCATTGAGG GGTGGTATTT
ATTAATGTAG ATGGATATCA GAACTTAAAG GCTTGAAAGG AAGCTTTATA CCTGTCCTCT GAAGACATTA CTTTTCATTT
ATGTGCTTGG TTTTGTAATT GAGGCTACTA TTGGTGGTCA CTAACTCGGT ATCTTTCGAA CTGTATGCTG TTCAAAACCT
TAAGTTGTCC ATTAAAATGG GTATCTGGAC CAATCATTTA TAACCGTAGT TTCGAACATG ATTATGTTAA ACATAATTTC
TAGGCCCATT TTCAATCCGT TGCAATATGG GTCAGGAATG GATCCATTTT TTCTTTTTGC GTTGGACTGG GTAATCTTCT
TTAGATTATA TGATGAAATA TACTTTAAAA GGAAAAATAG TATTACAAAG CTAGTAAATC AAGGAAGTTT GTTTACTCAA
CTACATGCAA CTTTTGAACG ATTGGGTTGT 

>Vigan.07G221100.01
TATAAATTTA AAATACAAAT AAAAACCAAA TAGTAGAAAA ATTATAGGGT TTCTATAACT CAACTAAATA AGCTTGAAGG
AATGGATAGT GTAAAAGTGT GAAAAAGGTA AGTTCAACAA TTGGAGAGCT TCCAAACACT ATAATTGAAG ATCCAAATCT
CCTTACTGTT TCTGCTAGTC ATCACACAAC AAACATTGCT TACAACCTAC GAACTACAAA TACCCCCTTT CAGAGGCAGA
ATCCAAACAA TCTCTCACTC TCATTTTCTC TCCCACACTC TCTCTCCCAT CCATCAACAT GCAGATCTTC GTCAAGACTT
TGACCGGAAA GACCATCACG CTGGAGGTCG AGAGCAGCGA CACCATTGAC AACGTCAAAG CCAAGATCCA GGACAAGGAA
GGTATCCCTC CTGACCAGCA GAGGTTGATT TTTGCTGGTA AGCAACTGGA AGATGGTCGC ACACTTGCTG ATTATAACAT
ACAAAAGGAA TCTACCCTTC ACTTGGTCTT GAGGCTCAGA GGAGGAACCA TGATTAAAGT GAAGACTTTG ACTGGAAAAG
AAATTGAAAT CGACATTGAG CCAACTGATA CGATTGACCG GATCAAGGAA CGTGTAGAAG AAAAGGAAGG AATTCCACCT
GTGCAGCAGA GACTCATATA TGCAGGTAAG CAGCTTGCTG ACGACAAAAC AGCCAAAGAG TACAACATTG AGGGTGGTTC
AGTACTTCAT TTGGTGCTTG CATTGAGGGG TGGTATTTAT TAATGTAGAT GGATATCAGA ACTTAAAGGC TTGAAAGGAA
GCTTTATACC TGTCCTCTGA AGACATTACT TTTCATTTAT GTGCTTGGTT TTGTAATTGA GGCTACTATT GGTGGTCACT
AACTCGGTAT CTTTCGAACT GTATGCTGTT CAAAACCTTA AGTTGTCCAT TAAAATGGGT ATCTGGACCA ATCATTTATA
ACCGTAGTTT CGAACATGAT TATGTTAAAC ATAATTTCTA GGCCCATTTT CAATCCGTTG CAATATGGGT CAGGAATGGA
TCCATTTTTT CTTTTTGCGT TGGACTGGGT AATCTTCTTT AGATTATATG ATGAAATATA CTTTAAAAGG AAAAATAGTA
TTACAAAGCT AGTAAATCAA GGAAGTTTGT TTACTCAACT ACATGCAACT TTTGAACGAT TGGGTTGT

>Vigan.07G221100.01
ATGCAGATCT TCGTCAAGAC TTTGACCGGA AAGACCATCA CGCTGGAGGT CGAGAGCAGC GACACCATTG ACAACGTCAA
AGCCAAGATC CAGGACAAGG AAGGTATCCC TCCTGACCAG CAGAGGTTGA TTTTTGCTGG TAAGCAACTG GAAGATGGTC
GCACACTTGC TGATTATAAC ATACAAAAGG AATCTACCCT TCACTTGGTC TTGAGGCTCA GAGGAGGAAC CATGATTAAA
GTGAAGACTT TGACTGGAAA AGAAATTGAA ATCGACATTG AGCCAACTGA TACGATTGAC CGGATCAAGG AACGTGTAGA
AGAAAAGGAA GGAATTCCAC CTGTGCAGCA GAGACTCATA TATGCAGGTA AGCAGCTTGC TGACGACAAA ACAGCCAAAG
AGTACAACAT TGAGGGTGGT TCAGTACTTC ATTTGGTGCT TGCATTGAGG GGTGGTATTT ATTAA

>Vigan.07G221100.01
MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK
VKTLTGKEIE IDIEPTDTID RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKEYNIEGG SVLHLVLALR GGIY*