GBrowse Details

Vigan.07G218300.01

Basic Information:
Name: Vigan.07G218300.01
Multiple alignment
Variant Information
Position: Chr07:29906847..29908669 (+ strand)
Length: 1823
Functional Information:
Description: Similar to NAC domain-containing protein. [G7IGZ8, Medicago truncatula]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
InterPro: NAC domain (IPR003441)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.22,0.02,0.59,0.41,0.13,0.13,3.72,0.05
Automatic updates:
Name: NM_001254404 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max NAC domain-containing protein 42-like (LOC100790471), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:29906847..29907007 (+ strand)
Length: 161
Type: five_prime_UTR
Position: Chr07:29907008..29907215 (+ strand)
Length: 208
Type: CDS
Position: Chr07:29907630..29907949 (+ strand)
Length: 320
Type: CDS
Position: Chr07:29908086..29908487 (+ strand)
Length: 402
Type: CDS
Position: Chr07:29908488..29908669 (+ strand)
Length: 182
Type: three_prime_UTR

>Vigan.07G218300.01 class=Sequence position=Chr07:29906847..29908669 (+ strand)
GAAAAACCTC TTCATTTATC CTTAGACTCT CTTCACACTA TAATAATGGA AAGAAGCTTC TCCACTTCAT TGAAATTGTT
TCACCTCTTC TTTCTCTCTC CCTTTTATTC AGCCAAAAGC AACACAAACT CACCCACACA CAGAAATAGA GAGAAGATAA
GATGGGTGTG AACGAAAATT TCAACAAGGA TGATGATCAT CATGAGTGTG TGGATGACGA TGAAGTCCCA CTTCCTGGAT
TTCGATTTCA TCCCACAGAT GAAGAGCTTG TTAGTTTCTA TCTACGAAGG AAGCTTGACA AGAAACCCAT CAGCATCGAG
CTCATCAAAC AGATTGATAT TTATAAATAC GATCCTTGGG ATCTTCCAAG TATGTTTTCT TGATCTTCTT CTGTTTCTCT
TAAATTTTCT AGAAAAGTGT CTCAAAATAT CATGGAAGGC TTTTCATCTA TATGTATCAT ATAATTATAA GCTTTGAGGC
TTTCCTAGTA GATTCTTATA TTATAAACTT GAACCAAATT TAGTACTTAG CATAGTTTTG TAAGAATAAT GTAAAGTGAA
TACCCTTGAA TTTCAGAACC AACAACATAC AGCATGATAG AATGAATTGG ACTAACAAAA TTTTATGAAT CATAATAAAA
CTAATCAGAA CTTCAAGTAT TGTAATGAAC CAACCTACTT TTTTCAGTCT AGTGCAATTT CTTTTGTTTT TTATTTTTAT
TTTTTCTGCA CTGATTCCTT TTTATTATTG TGAATTTTGT TGCAACCTTT TGTGTGTAAG CAGAGAGCAA TGGCAGTGGA
GGAGAGAAGG AGGGGTACTT CTTCTGCAGA AGAGGGAGGA AGTATAGGAA TAGCATAAGG CCTAATAGAG TGACTGGGTC
TGGGTTCTGG AAAGCAACCG GCATAGACAA ACCAGTGTAC TCACAAGGTG GAGAAGGCAA TGACTGCATT GGACTCAAAA
AAACATTAGT CTATTACCGT GGCAGTGCAG GCAAAGGCAC CAAAACCGAT TGGATGATGC ACGAGTTTCG ACTTCCTTCT
AACACAGACA CCAACACAAG CCTTCCAAAC TCCAGGAATT ATGTCGATGT TCCCCAAGAA GCTGTAAGAA ATTATATATA
TTATATTCTA GACTAAGCTC TTGTTTTTAA TACGTTATTC ACAACTTTCG TTTCATACGT TATTAATTTT TCACTTAGCC
TTAGCAAATA TTCCTCAAAT TTTTTCATAC AATATGCAGG AAATTTGGAC GTTGTGTAGA ATTTTCAAGA GAAACGTGTC
ACAGAGGAAG CACGTGGCGG ACTTGAAACA AGTATCTGCC AAGCGCCATG CATTTTATGA CAAGAGCTCG AGAGCGAGCA
ATATGGAGTC TGACAGTGGT AACCAAGAAT CGTATATAAA CTTTGGTGGG TACTATCACA ACGAGCAGAA ACCCGTCATC
AACTATACAA ACTGTGATAA AAGGAATCAG TTTAGTGTGG TGAGTCAGTT GTGTTCTACA GTGGCACAGC AGCAACCTCA
ACTAACTGCA CCATCTTCTA ACCTTTGGAG TAACCCACCT GGGAACGATT TCTTCACATT CGATAACTGG GATGAACTTG
GATCCGTAGT GAAGTTTGCT GTTGATTCGC CTAGCTTGTA GATGAAGAGG TGGAATTCAT GTTGAGTTGA TCGTAGTTAA
TTGGAGATGT TAGAATGAAA TCTATATCAT GAGAGTGCGT TTGCTTGTTT TAGAGATTAT TCATGCTGTT GATCATGATG
ACTTGTAGTT ACAGACTTGT TGACATACGA TATGAATATG CTGTTTTTTA TATAGTTACA GAC

>Vigan.07G218300.01
GAAAAACCTC TTCATTTATC CTTAGACTCT CTTCACACTA TAATAATGGA AAGAAGCTTC TCCACTTCAT TGAAATTGTT
TCACCTCTTC TTTCTCTCTC CCTTTTATTC AGCCAAAAGC AACACAAACT CACCCACACA CAGAAATAGA GAGAAGATAA
GATGGGTGTG AACGAAAATT TCAACAAGGA TGATGATCAT CATGAGTGTG TGGATGACGA TGAAGTCCCA CTTCCTGGAT
TTCGATTTCA TCCCACAGAT GAAGAGCTTG TTAGTTTCTA TCTACGAAGG AAGCTTGACA AGAAACCCAT CAGCATCGAG
CTCATCAAAC AGATTGATAT TTATAAATAC GATCCTTGGG ATCTTCCAAA GAGCAATGGC AGTGGAGGAG AGAAGGAGGG
GTACTTCTTC TGCAGAAGAG GGAGGAAGTA TAGGAATAGC ATAAGGCCTA ATAGAGTGAC TGGGTCTGGG TTCTGGAAAG
CAACCGGCAT AGACAAACCA GTGTACTCAC AAGGTGGAGA AGGCAATGAC TGCATTGGAC TCAAAAAAAC ATTAGTCTAT
TACCGTGGCA GTGCAGGCAA AGGCACCAAA ACCGATTGGA TGATGCACGA GTTTCGACTT CCTTCTAACA CAGACACCAA
CACAAGCCTT CCAAACTCCA GGAATTATGT CGATGTTCCC CAAGAAGCTG AAATTTGGAC GTTGTGTAGA ATTTTCAAGA
GAAACGTGTC ACAGAGGAAG CACGTGGCGG ACTTGAAACA AGTATCTGCC AAGCGCCATG CATTTTATGA CAAGAGCTCG
AGAGCGAGCA ATATGGAGTC TGACAGTGGT AACCAAGAAT CGTATATAAA CTTTGGTGGG TACTATCACA ACGAGCAGAA
ACCCGTCATC AACTATACAA ACTGTGATAA AAGGAATCAG TTTAGTGTGG TGAGTCAGTT GTGTTCTACA GTGGCACAGC
AGCAACCTCA ACTAACTGCA CCATCTTCTA ACCTTTGGAG TAACCCACCT GGGAACGATT TCTTCACATT CGATAACTGG
GATGAACTTG GATCCGTAGT GAAGTTTGCT GTTGATTCGC CTAGCTTGTA GATGAAGAGG TGGAATTCAT GTTGAGTTGA
TCGTAGTTAA TTGGAGATGT TAGAATGAAA TCTATATCAT GAGAGTGCGT TTGCTTGTTT TAGAGATTAT TCATGCTGTT
GATCATGATG ACTTGTAGTT ACAGACTTGT TGACATACGA TATGAATATG CTGTTTTTTA TATAGTTACA GAC

>Vigan.07G218300.01
ATGGGTGTGA ACGAAAATTT CAACAAGGAT GATGATCATC ATGAGTGTGT GGATGACGAT GAAGTCCCAC TTCCTGGATT
TCGATTTCAT CCCACAGATG AAGAGCTTGT TAGTTTCTAT CTACGAAGGA AGCTTGACAA GAAACCCATC AGCATCGAGC
TCATCAAACA GATTGATATT TATAAATACG ATCCTTGGGA TCTTCCAAAG AGCAATGGCA GTGGAGGAGA GAAGGAGGGG
TACTTCTTCT GCAGAAGAGG GAGGAAGTAT AGGAATAGCA TAAGGCCTAA TAGAGTGACT GGGTCTGGGT TCTGGAAAGC
AACCGGCATA GACAAACCAG TGTACTCACA AGGTGGAGAA GGCAATGACT GCATTGGACT CAAAAAAACA TTAGTCTATT
ACCGTGGCAG TGCAGGCAAA GGCACCAAAA CCGATTGGAT GATGCACGAG TTTCGACTTC CTTCTAACAC AGACACCAAC
ACAAGCCTTC CAAACTCCAG GAATTATGTC GATGTTCCCC AAGAAGCTGA AATTTGGACG TTGTGTAGAA TTTTCAAGAG
AAACGTGTCA CAGAGGAAGC ACGTGGCGGA CTTGAAACAA GTATCTGCCA AGCGCCATGC ATTTTATGAC AAGAGCTCGA
GAGCGAGCAA TATGGAGTCT GACAGTGGTA ACCAAGAATC GTATATAAAC TTTGGTGGGT ACTATCACAA CGAGCAGAAA
CCCGTCATCA ACTATACAAA CTGTGATAAA AGGAATCAGT TTAGTGTGGT GAGTCAGTTG TGTTCTACAG TGGCACAGCA
GCAACCTCAA CTAACTGCAC CATCTTCTAA CCTTTGGAGT AACCCACCTG GGAACGATTT CTTCACATTC GATAACTGGG
ATGAACTTGG ATCCGTAGTG AAGTTTGCTG TTGATTCGCC TAGCTTGTAG 

>Vigan.07G218300.01
MGVNENFNKD DDHHECVDDD EVPLPGFRFH PTDEELVSFY LRRKLDKKPI SIELIKQIDI YKYDPWDLPK SNGSGGEKEG
YFFCRRGRKY RNSIRPNRVT GSGFWKATGI DKPVYSQGGE GNDCIGLKKT LVYYRGSAGK GTKTDWMMHE FRLPSNTDTN
TSLPNSRNYV DVPQEAEIWT LCRIFKRNVS QRKHVADLKQ VSAKRHAFYD KSSRASNMES DSGNQESYIN FGGYYHNEQK
PVINYTNCDK RNQFSVVSQL CSTVAQQQPQ LTAPSSNLWS NPPGNDFFTF DNWDELGSVV KFAVDSPSL*