GBrowse Details

Vigan.07G213500.01

Basic Information:
Name: Vigan.07G213500.01
Multiple alignment
Variant Information
Position: Chr07:29427179..29430585 (- strand)
Length: 3407
Functional Information:
Description: Similar to Uncharacterized protein. [Q53B73, Glycine max]
GO: Biological Process: flavonoid biosynthetic process (GO:0009813)
Molecular Function: intramolecular lyase activity (GO:0016872)
Molecular Function: chalcone isomerase activity (GO:0045430)
InterPro: Chalcone isomerase (IPR016087)
Chalcone isomerase, 3-layer sandwich (IPR016088)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.36,4.36,15.71,9.37,1.34,4.77,1.97,7.77
Arabidopsis thaliana homolog: AT1G53520.1
Automatic updates:
Name: NM_001251461 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chalcone isomerase 3A1 (CHI3A1), mRNA.
PubMed ID: 25385351 NCBI(pubmed)
15778463 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr07:29427179..29427414 (- strand)
Length: 236
Type: three_prime_UTR
Position: Chr07:29427415..29427573 (- strand)
Length: 159
Type: CDS
Position: Chr07:29428051..29428265 (- strand)
Length: 215
Type: CDS
Position: Chr07:29428355..29428510 (- strand)
Length: 156
Type: CDS
Position: Chr07:29428878..29428979 (- strand)
Length: 102
Type: CDS
Position: Chr07:29430202..29430415 (- strand)
Length: 214
Type: CDS
Position: Chr07:29430416..29430585 (- strand)
Length: 170
Type: five_prime_UTR

>Vigan.07G213500.01 class=Sequence position=Chr07:29427179..29430585 (- strand)
CTCCAACAAG ATGACGGTTA GATTATGTCG GCGGAAAACC GAAGTGAGAG TACTTCTGTT CAGTTCAGAT TGCTTTGATC
TTAGTATATA CATATATTAT TAATCCTTTC AAATATTTTA TTACCAAACA TCGTGGTTGA ATATACACAA CACAATCCAA
CCTTAAAAAG ATGCTTGGAG CTGTAGCAGC TTCCACAGCA CTATGCTTTT CACCATCCAC GCACCCCACA AGAACTTTTG
TTCACAGAGG AGTCTCAAAT TCAACATTGC CATTGAGCAA CCATGGCCAC TCTTTCTCAC TCTTATCATC CACCCCTATG
CATTTCTCAT CACACAGCAG TAGAAGACAA CCCCTTTTCC TTGCACAAGC TGCTTCATCT TCAGGTTAGA TTCTGTGGTC
ACTCCTACTC AGTTGTTTTC AGCTTTACTT TTCCTTTTTC AATTCTCTTC ACCACTCTCT TTTTTAATGC CAATTTGTAT
TGTATGCCGT GTTGTGTTGC CTGGTTTCTT TCTTATTCTG TTTCTTCTTG GAATGCACTT GGCACTTTCT TCGAAAATGA
ACAATGCAGA CTGGGGAACA AACTTTAAGG TTGTGGAGAT ATTCTATGTT GGAAATCCCA GGAAAGTTAG TGTCTATTCT
GACTAGATTT GTACGGACAT CTTGGTCACG TAATCGGATC ATTTATTAAT TTCTAGTCTC ACATTTAAAA TGTATGTACC
TTAGTGTGAG GGAAGTGTGT TGGAAATCTT ATATCCATTA GAGATAAAAA TGATAAGTGG GTGCAAACCT GGTTTTGTAG
GATTGAGTTT AAAAATCCAC TTCTTAATAT TCCATACCCT GAAAGTTAGA TTGATGTTGC CATAGAATAT GTGTTTATTG
TTTTGTTTTG TTTTAAATTT AAACTAAATG TTAATTTTGA GTCCTGCCGG GTAACTTGTT TAATAGAGAA TAATGCTTTT
GCATATTCAA TTGGAGGTGA CATGGTTACA GTGGAACTTA TTGTGATGTT CTGCAGTATT TTTTTGCTGG CTTCTTTGTA
CCTGTCAACA TACCAAAAGT TCTAAATTGA TAATTGATAC TCGTGTATAT ATATATATAT ATATATATAT ATATATATAT
ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT AGGCATAGCA TTTTTGTTTA CATGTTTTGA
TGATAATGAA AATACATTAA AAGAATTACC TGTTTGTCAG CTGGCATAAA TGATTCCTCT TTAACTTATA CAGAGAGGTC
ATAAACAGCA AGTGTTTAAA TTTCCATTAG GAGTTTGAAC TCTGTTTTCA TGTACTATGG TTACACAAGA CTTCATTTCA
AACTACCAAG ATCAGTTACA AAATAAAATT AATTAAGCTG TTGCCTACCA TACTATTGCC CTCAATTCTT AGGACTTAAC
TTACATATCT ATCAAACAAC TTCACTTAAT TTCAACTGGT TTTAATATGA AATCTGAAAT GGTATCATAA TCTATAGTTC
ATCTTTGTAT TTCACCTATT TTGATTGGCT TGCCTATTAT TCAACTGATG ACTAATTTAT TTAATTTCGG TAATTGATCA
CTGAAGCTGC AAATGCTGAA TACGTGGAGG AGCCAGCAAC AAAAGTGAAA TTCCAGACAT GTTTGAATTT TCCGGGTTGC
TCAAATTCAT TAACTTTGTT TGGAGCTGGT TAGTTGTTAT AGTACCACAT GACTTTTGGA AGAGAAAAGA TTAAAATGTT
CTTGACGTAT GAAAATAGGA TACAACTACA TCCCTAATTT GATATGTTAA TATGCAAGGA TATATATTAT AGCAAAAGTC
ATGTCATAGT ATCAAGACTT TTTGAATAGA AAAAGACAAA AATTCTCTGA GCATGTTAGA AAAGGTTGAT ATGTTCGAAA
TTATAATATG TTTGGTGAGG TTTGCATCTA CTTATATACT GAACTTCCAA CTGTTGCCAC CCTGAAGATC AATGAAATTT
ATTAAGTTTC AATAATGTAG TTATGCTTTT ATTTCCAATG TTATAAACTT TGATGGATAA CAACACTTAT TTCAGGATAC
AGAGAGAAAG TTTTTGCAAT TATTGGTGTT AAGGTCTATG CTGCAGGTTT GTATCTAGAT CAATCTATTA CTCCTGAATT
GAATGCTTGG AAAGGGCTAT CAAAAGATGC TATTCAGGGG AATTCTTCCT TGTTCCAGAC CATTTTCCAA TGTAAATAAC
TTCATAATCA TTTATTTGTT TCTGCAATGC TGAGTCATAC AGTGAATAAG TCCATAATAC ATGCCTTTAT ATGATTGCAG
CTTCCTTTGA GAAATCATTG CAAATTATTC TTGTGAGAGA TGTTGATGGT CAAACATTTT GGGATGCATT AAGTGATGCC
ATAGCTCCAA GAATTCCAGC ATCCACATCT GTAGATGAAA CTGCTTTGAC CACTTTCCGT GGTGTCTTTC TAGATCGCCC
TCTTAAGAAA GGAACTTTCA TACTTCTGAC TTGGTTGAAT CCCACCAAAT TGCTTGTAAT CCTACTTTCA TATTTTTCTT
GTGACATATT CTTCAAACAA ATTATCTATT ATTTTTTTAG GTTAAATATG TTTTTAGTTT TTAAACTTAT ACGTGAAATT
AGAATTTATC TATATCCCAA ACTTTGATAA ATTTTGTTCC CCAAACTTTA AAATTGAATA GATATAGTCC TTTTAATTCA
ACTGCATCAA CTTTCTTTTA AGTGTTAAAT GACATTTCAA ACCATTTGAC ACATTCAAGC TTAAATACCA ACTTGAAACA
CGGTTTAGCA CATAAAAAAA ATATTATTAG GTTAAAAGAA TTATATTTAT TCATTTTTAA AGTTTGAGAA TCAAGATGTA
TTAAAGTTTG GGACATCAAT GAATTTCAAT TTCGCATCAA AGTTTAAGAA CTAAAAAACA GATTTAACCT TTTTTTTTCT
TCATTTACCT TTTCTGTCTA AAATGTTCTT ACTAAGTCCA TTGATATTTC AGGTTTCTGT CTCCCCAAAC GGGTTTCCAT
CTACTGTAGA TGCTACAATT GAATCTGCAA ATGTGGCTTC TGCCCTTTTT AATGTATTCC TTGGAGATAA TCCTGTTTCT
CACTCCTTGA AATCTTCAGT GGCTGAAGGC TTGTCAAAAG TACTCAAATA GAAAAGTTTT GTGTCTATTG AGAAAGTTCC
ATGCATCAAT CCTTAAATTA TTGCTGTAAC CCATATTCTA CTGATGTCTG AGTAAGTATG CTTCATGTTC TACTGATGTA
TGTCTAGTAG TGTACACATG GAAGCTGTTA CTTAGTTCCG GTGGTTATCT CTAGTCTTTT AAAATAAATT GTTTTGCCAT
TACTATATAC TCTTTAAATC AATTCTGATA TACTATTTTT CCTAGGA

>Vigan.07G213500.01
CTCCAACAAG ATGACGGTTA GATTATGTCG GCGGAAAACC GAAGTGAGAG TACTTCTGTT CAGTTCAGAT TGCTTTGATC
TTAGTATATA CATATATTAT TAATCCTTTC AAATATTTTA TTACCAAACA TCGTGGTTGA ATATACACAA CACAATCCAA
CCTTAAAAAG ATGCTTGGAG CTGTAGCAGC TTCCACAGCA CTATGCTTTT CACCATCCAC GCACCCCACA AGAACTTTTG
TTCACAGAGG AGTCTCAAAT TCAACATTGC CATTGAGCAA CCATGGCCAC TCTTTCTCAC TCTTATCATC CACCCCTATG
CATTTCTCAT CACACAGCAG TAGAAGACAA CCCCTTTTCC TTGCACAAGC TGCTTCATCT TCAGCTGCAA ATGCTGAATA
CGTGGAGGAG CCAGCAACAA AAGTGAAATT CCAGACATGT TTGAATTTTC CGGGTTGCTC AAATTCATTA ACTTTGTTTG
GAGCTGGATA CAGAGAGAAA GTTTTTGCAA TTATTGGTGT TAAGGTCTAT GCTGCAGGTT TGTATCTAGA TCAATCTATT
ACTCCTGAAT TGAATGCTTG GAAAGGGCTA TCAAAAGATG CTATTCAGGG GAATTCTTCC TTGTTCCAGA CCATTTTCCA
ATCTTCCTTT GAGAAATCAT TGCAAATTAT TCTTGTGAGA GATGTTGATG GTCAAACATT TTGGGATGCA TTAAGTGATG
CCATAGCTCC AAGAATTCCA GCATCCACAT CTGTAGATGA AACTGCTTTG ACCACTTTCC GTGGTGTCTT TCTAGATCGC
CCTCTTAAGA AAGGAACTTT CATACTTCTG ACTTGGTTGA ATCCCACCAA ATTGCTTGTT TCTGTCTCCC CAAACGGGTT
TCCATCTACT GTAGATGCTA CAATTGAATC TGCAAATGTG GCTTCTGCCC TTTTTAATGT ATTCCTTGGA GATAATCCTG
TTTCTCACTC CTTGAAATCT TCAGTGGCTG AAGGCTTGTC AAAAGTACTC AAATAGAAAA GTTTTGTGTC TATTGAGAAA
GTTCCATGCA TCAATCCTTA AATTATTGCT GTAACCCATA TTCTACTGAT GTCTGAGTAA GTATGCTTCA TGTTCTACTG
ATGTATGTCT AGTAGTGTAC ACATGGAAGC TGTTACTTAG TTCCGGTGGT TATCTCTAGT CTTTTAAAAT AAATTGTTTT
GCCATTACTA TATACTCTTT AAATCAATTC TGATATACTA TTTTTCCTAG GA

>Vigan.07G213500.01
ATGCTTGGAG CTGTAGCAGC TTCCACAGCA CTATGCTTTT CACCATCCAC GCACCCCACA AGAACTTTTG TTCACAGAGG
AGTCTCAAAT TCAACATTGC CATTGAGCAA CCATGGCCAC TCTTTCTCAC TCTTATCATC CACCCCTATG CATTTCTCAT
CACACAGCAG TAGAAGACAA CCCCTTTTCC TTGCACAAGC TGCTTCATCT TCAGCTGCAA ATGCTGAATA CGTGGAGGAG
CCAGCAACAA AAGTGAAATT CCAGACATGT TTGAATTTTC CGGGTTGCTC AAATTCATTA ACTTTGTTTG GAGCTGGATA
CAGAGAGAAA GTTTTTGCAA TTATTGGTGT TAAGGTCTAT GCTGCAGGTT TGTATCTAGA TCAATCTATT ACTCCTGAAT
TGAATGCTTG GAAAGGGCTA TCAAAAGATG CTATTCAGGG GAATTCTTCC TTGTTCCAGA CCATTTTCCA ATCTTCCTTT
GAGAAATCAT TGCAAATTAT TCTTGTGAGA GATGTTGATG GTCAAACATT TTGGGATGCA TTAAGTGATG CCATAGCTCC
AAGAATTCCA GCATCCACAT CTGTAGATGA AACTGCTTTG ACCACTTTCC GTGGTGTCTT TCTAGATCGC CCTCTTAAGA
AAGGAACTTT CATACTTCTG ACTTGGTTGA ATCCCACCAA ATTGCTTGTT TCTGTCTCCC CAAACGGGTT TCCATCTACT
GTAGATGCTA CAATTGAATC TGCAAATGTG GCTTCTGCCC TTTTTAATGT ATTCCTTGGA GATAATCCTG TTTCTCACTC
CTTGAAATCT TCAGTGGCTG AAGGCTTGTC AAAAGTACTC AAATAG

>Vigan.07G213500.01
MLGAVAASTA LCFSPSTHPT RTFVHRGVSN STLPLSNHGH SFSLLSSTPM HFSSHSSRRQ PLFLAQAASS SAANAEYVEE
PATKVKFQTC LNFPGCSNSL TLFGAGYREK VFAIIGVKVY AAGLYLDQSI TPELNAWKGL SKDAIQGNSS LFQTIFQSSF
EKSLQIILVR DVDGQTFWDA LSDAIAPRIP ASTSVDETAL TTFRGVFLDR PLKKGTFILL TWLNPTKLLV SVSPNGFPST
VDATIESANV ASALFNVFLG DNPVSHSLKS SVAEGLSKVL K*