GBrowse Details

Vigan.07G205900.01

Basic Information:
Name: Vigan.07G205900.01
Multiple alignment
Variant Information
Position: Chr07:28444527..28449368 (+ strand)
Length: 4842
Functional Information:
Description: Similar to Uncharacterized protein. [I1KU11, Glycine max]
InterPro: Lateral organ boundaries, LOB (IPR004883)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.13,0.07,3.59,0.94,4.83,22.14,36.54 ,5.19
Automatic updates:
Name: NM_001254434 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max LOB domain-containing protein 4-like (LOC100790989), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001354004 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max LBD domain-containing transcription factor (LBD32), mRNA.
PubMed ID: 28464070 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr07:28444527..28444678 (+ strand)
Length: 152
Type: five_prime_UTR
Position: Chr07:28444679..28444855 (+ strand)
Length: 177
Type: CDS
Position: Chr07:28448426..28448797 (+ strand)
Length: 372
Type: CDS
Position: Chr07:28448798..28449368 (+ strand)
Length: 571
Type: three_prime_UTR

>Vigan.07G205900.01 class=Sequence position=Chr07:28444527..28449368 (+ strand)
CTTCTCCTCT CTCTACCTCT CTTTTCTCTC CTTTTCCTAT CTTCATTTTC ACCCTCATTA TCCCATCTTC ATTAATTTGC
TTCTAGCTAG GTTTCTGAAA CAACCTTAAT ACCTCAGAGG GCTAGCACAT TGTCTTGTTT TCCCATAAGA ACATGAAAGA
GAATGGTAGA AAACTAGGTA CCATGTCGCC ATGTGCGGCA TGCAAGCTTC TTCGAAGGAG GTGCACGAGA GATTGTGTGT
TTGCTCCTTA TTTTCCTGCT GATGAACCCC AGAAGTTTGG TAGTGTGCAC AAGGTTTTCG GGGCTAGCAA TGTGAACAAA
ATGCTACAGG TACAAATTTT TATGCACCTC CCCTTTCTCT ATCATCGTAT CCACGCATAA TATTTCTGTC GTTTTCATCA
AAATACGCTA GTAGAATACT GTTTTAGGTC CAATTCAACT TTTTCTATAC ATTGAATCAA ATGCACAGTT GTAGAAAAAT
ATTTCTAGGT TAAATTACGG TTTGGAATCA TACTGGTGCC TGCATTAGGT CACTTTTATA GATAATTTCC TCTCTTACTG
CTGTGCCAAT TAAAAAACGT GAATATATTT TATGAAATTG TTGAATAGGT AAAAACAAAC AAGGATTTTA ATAATTATAT
TTTTCTACTT TTAAGAATTA TTTTTCTGAT AAATGAATTA ATTAGTGAAA TAGTATACAC TCATAGGACA ACTTAATGAC
ATATCTTGTG CCTAGTTGCT TTTTTAATTA AATTATTTTT CCCATCTTAA CATAATTGGT GAAATAGAGC ACCAAAGGTG
TACCACTGTG TGCAAAACCA CCTATAATGG AAAAAGTTAT GTTAACACCA CTATTCACAA TAACTCCCAT TTGACACTTA
TTTTTCTTGA TAAAATATTA TATTATAATA AAATATTAAT GTATTTGATC GTCAAATGGA AGTATTGGTG TCAAATTGCA
AGCTCTCATA TCTAATATAC TAAGTAAAGG TTACTCCACA TATGAGCAGA ACCATATTAG AGTAGCATCG GAGATCAAGA
GACATGGCAT TTATCTGTGT GTGGTGAATC TATATATACT CAAATTATAG CATATATACG ACTTCCTATC AAATTTTTTT
GTATGTAAGT AACTATAATT AACCTTAAAT TATGGAGAAT ATATATTCAT CCCCTCAATT TATATATATA TATATATATA
TATATATATA TATATATATA TATATATATA TATATATATA TATATATATT GATTCTTTAC GGAAGGTAGT TTTAGATTTT
ATATAACGAG TGTTTTTGGT AATTAATTTA CCTAATCTTT TTACAGAAAT TATCTAAATA TCTTTTACGT ATTTTCATGG
GGAAAGAAAT GTAATTTGAA ATAAAACTAA TTCTTAGAAA GAATTATATG TTAGTCTTTA TATGTTTTTT TTCATGCCCT
GGTCCTTTTT CATTTTCCCA GTCTTTATCC AAGTATATTA GAAGTGATTT AATAGATATG TAGATAATTT ACCTATCAAA
AAACAGTTAT AGGGATCATT CATTCACTCT ATTGATAACA ATTTTTGTTT TTTTTTCTTT CGTATTATTT GAAACAACCT
TAAAAATAGA TTAGTTTAAA ATGATCAGTT TAAAATTAAC ATTCATTACA AAATAACTTT AACATACAGG TCTAGTTTAT
CTTTAAAAAG TTTATATTAG TTTTAGAAGT CATGCAAGCG CCTCATAGAA GAGTGAGAGA ACACAAACAG CATGCTTTAA
ACTCAACATG AACCAATTAT TTGCAAACTT TTTAGTTATT AGGTGAACGA AAGTGATTGA TTTTACATCT AACAACTTGG
CCTATAATTT CACTTTGGGA ATGAAACTAA CCCTAGTTCC TGAGTAACCA ATCCTATTTT AACTGCCATC CTTTGAAACC
GTACATTAAA TTACTAAAGC AACGTACATC AGTGACCTCT CCATATGTTT CTAATAATTG CAGAGGTTGC CACAAACAAC
TCCAAAAGTT TTGATTTCTT AAATTGAAAG TAGTTGTCCA AGAACAGTGA AAAATTGTTT TTGTTTCTCC CATATTTACT
ACCGTTATAG TGGTTATAAT TACAGTTGAG GAAGGTCCTT TTAAATAAAC TGTTTCCAAT TCTCATTCTT TGTTAAAGTA
AAGTATTACT GTAGCAGTAA CACCCACCAA AGGATGAGAG ATATATAAAT TAGGTTTACC AGTTGAAGGA GTGTGAAGAG
GATAAAGTGA AAAAGATGTT GCTAATTGCA TCATTACTGG TGGTTATATG TAACCCAATT TGTTCAGCAT CTATCTTTAT
GACCACCGCT AGGGTTTGGC TTTTTGTCTT GGACTCCTTG GGCAATGATA ATTCCGTAAA AAAGAAAGTT TTAGTATGCT
CATCTTTTCC TTTTGTCTCT AAAATCAGGG TTACATCGAA AGAGACATTA GAAATATGTC CAAAAGTGAT GTTGATTCCC
AGATAAAGAT GTTTCAACCT GTCAATAAAT TATTATTTCA AGTGAATTAT TTTGTAAGCA TGATACCTTC ATGACATATT
GACATATATA TATGTCTAAA TAAAAGAATG GTAAGAGAGT TGAATCCATT GAGCATGATC ACAAGAATGT ATGATTAATC
AACCTTGAAT ATTCATCTGT TTACCTATAA ACTTGCACGA TTTGAAAGTC AAAATTTTAC AGGATTACCT TTTACTTGCC
CTAATTCTAG CATACAAACC AATTTCAGGG TTGCCTTTTT CGGTGGTTGT TAAGAAGTAT ATTGTATTTC AAAGTATTAT
GATTCTGAAA TCGTTACACA TAATATTATT GTCTCTATAG TCAACTGTTT GATATTTTTC TTTTCCACTC CAAAGGAACG
AACTTCAACG TGCACCTTAT CATCCCTTTT TTGACAAAGC ATTTGATCAG TTTATTCCCA AACAACCCAT TTGGTTTACA
TCATATCCCT CGATCTCTAC AAATTCAAAA AGCTAGTTCA TGCATCTTTG GTCAAAAATT CACAAGCATA TTTATTTTTA
TTTTTTCCTA GTGATATGTT TAGGTACGTA AAGGCTTTTT CCCTCAAATT TTATAGCATT AACATGCGGA CACACTAGTG
CAAGCCACAT ATAAAACCTT TTCTTTTGCT CAACGGTCTA AACTCCCTAT GAGCAAACAA TCATTACCCT AAAAGTCACA
TACACGCCAC ATAATTATGA GATGTCATGT AATATGATAA TTCACTTTAT ATAATTGAGA TTCGATCATT TATATATGTT
TCTTCCTATT TAATTTCTTA CAGTATTTTT AATGTATATA TGGTTGAATA AATAATATAT AGAGACGGAA AAGTAAAGTA
AAGTTTGTTA TGAAAATTAA ATAAAATGTT AAATGTGTTG GATGATTACA TCGATCTAAT GGGTGCTATA GTAGAAAAAA
ATGATAAACA TATTACATGT GGGGTGCACC TATTATTACA CTATAACATA TGTTGGTTAA ACTAGTATAA TATTTTGGTT
AGATTAATTG GTATAATTGT TACTTTATTC ATATTTAAAA CAATATATCA ATTATATAAC ACATCATCAC ATAAACATAC
ATGAAAAGAC CTTCTGAAAC CCTATAATCA TCACAAACCT TCTAATGACG TGAAAAATTA ATTATCACTT AGCTATGATA
GAGACACATG GCATCCTAAA TTATTTTTCA AGATAACAAA TGTTTGATTA AACCAATGCA ATATTTTGGT TAAATTGATA
CAATGGTAGG TTAAAGTTTA AATAAATATG CAATTGTAGT GATATATATA TATATATATA TATATATATA TATATATATA
TATATATATA TATATATATA TTAGCACTCT TTTAATATTT ATATTTTGAA AAAATGTAGG AATTACCTGA GCACCAAAGA
AGTGATGCAG TAAGTTCAAT GGTGTATGAA GCAAATGCAA GAGTGAGGGA CCCTGTGTAT GGATGTGTGG GAGCCATTTC
CTCACTCCAA CAACAAGTTG ATGAGCTCCA AACCCAATTG GCACTGGCAC AAGCAGAGGT TGTTCACATG AGAATGAGCC
AATTCTCACC ACCATCATCG GATCAACACC ACCACCGTCA AGCCTCCCTA ATGCCTCATG AACCCTCCAA TTCATCATCA
GAAAACATGT TCCAATCTAG CAGGGTCTTG TCTTCACAAA GCAAGTCTTT TTTTGGCATG GACATGGTCG TTGATCAGAC
CATCATGGGG CAATCTTTGT GGTCATACTA GCTTCTCTCA TGGCATGCAT GCCTTCACTT TCTTCATTTT CCTGTTGTCA
TTATTACATT ATCACGGGCT TGCTTTATTG TCTGCCTCGT TACCACTTTT TCTCTGCTTT GTTTCCCTCA CTATCATATA
TCTTTACCTT AGTCTCTTCT CATGACTCAA AGGACATCCA TCTATCTCTC TGCATTACCA AGAGATGATC ATGATGATTA
GTTAGTCCTA GTGTAAATGT CTAAACTTGT AATTATGAGT AATCATATAA TTAGTATTAA GTTGACTATA CTTTTTCACT
TCCTCTTCTT CACTATCTAT GTCACCATTT TGTTCCAAAC ATCATCATTT TCGTGTGCTA GAGAGAACGA AAATCAAAGT
ATAAAAACTA TTGATAAAGC TGGACGGGTC TTGCTACGAT GAAGTAGCAA AAAAGTGTCT CGTGGGTTAG TCACTCGGGA
AAATAATGTT GGATATATTA ATATTTTAAT TAACTTTGTC AAGATAAATG TAAATGAATT TAATTTTACT TGATGAATGG
ATGGAAGGAA TGGTAGACAA CCGTACAAAT TTAGATTTTG TA

>Vigan.07G205900.01
CTTCTCCTCT CTCTACCTCT CTTTTCTCTC CTTTTCCTAT CTTCATTTTC ACCCTCATTA TCCCATCTTC ATTAATTTGC
TTCTAGCTAG GTTTCTGAAA CAACCTTAAT ACCTCAGAGG GCTAGCACAT TGTCTTGTTT TCCCATAAGA ACATGAAAGA
GAATGGTAGA AAACTAGGTA CCATGTCGCC ATGTGCGGCA TGCAAGCTTC TTCGAAGGAG GTGCACGAGA GATTGTGTGT
TTGCTCCTTA TTTTCCTGCT GATGAACCCC AGAAGTTTGG TAGTGTGCAC AAGGTTTTCG GGGCTAGCAA TGTGAACAAA
ATGCTACAGG AATTACCTGA GCACCAAAGA AGTGATGCAG TAAGTTCAAT GGTGTATGAA GCAAATGCAA GAGTGAGGGA
CCCTGTGTAT GGATGTGTGG GAGCCATTTC CTCACTCCAA CAACAAGTTG ATGAGCTCCA AACCCAATTG GCACTGGCAC
AAGCAGAGGT TGTTCACATG AGAATGAGCC AATTCTCACC ACCATCATCG GATCAACACC ACCACCGTCA AGCCTCCCTA
ATGCCTCATG AACCCTCCAA TTCATCATCA GAAAACATGT TCCAATCTAG CAGGGTCTTG TCTTCACAAA GCAAGTCTTT
TTTTGGCATG GACATGGTCG TTGATCAGAC CATCATGGGG CAATCTTTGT GGTCATACTA GCTTCTCTCA TGGCATGCAT
GCCTTCACTT TCTTCATTTT CCTGTTGTCA TTATTACATT ATCACGGGCT TGCTTTATTG TCTGCCTCGT TACCACTTTT
TCTCTGCTTT GTTTCCCTCA CTATCATATA TCTTTACCTT AGTCTCTTCT CATGACTCAA AGGACATCCA TCTATCTCTC
TGCATTACCA AGAGATGATC ATGATGATTA GTTAGTCCTA GTGTAAATGT CTAAACTTGT AATTATGAGT AATCATATAA
TTAGTATTAA GTTGACTATA CTTTTTCACT TCCTCTTCTT CACTATCTAT GTCACCATTT TGTTCCAAAC ATCATCATTT
TCGTGTGCTA GAGAGAACGA AAATCAAAGT ATAAAAACTA TTGATAAAGC TGGACGGGTC TTGCTACGAT GAAGTAGCAA
AAAAGTGTCT CGTGGGTTAG TCACTCGGGA AAATAATGTT GGATATATTA ATATTTTAAT TAACTTTGTC AAGATAAATG
TAAATGAATT TAATTTTACT TGATGAATGG ATGGAAGGAA TGGTAGACAA CCGTACAAAT TTAGATTTTG TA

>Vigan.07G205900.01
ATGAAAGAGA ATGGTAGAAA ACTAGGTACC ATGTCGCCAT GTGCGGCATG CAAGCTTCTT CGAAGGAGGT GCACGAGAGA
TTGTGTGTTT GCTCCTTATT TTCCTGCTGA TGAACCCCAG AAGTTTGGTA GTGTGCACAA GGTTTTCGGG GCTAGCAATG
TGAACAAAAT GCTACAGGAA TTACCTGAGC ACCAAAGAAG TGATGCAGTA AGTTCAATGG TGTATGAAGC AAATGCAAGA
GTGAGGGACC CTGTGTATGG ATGTGTGGGA GCCATTTCCT CACTCCAACA ACAAGTTGAT GAGCTCCAAA CCCAATTGGC
ACTGGCACAA GCAGAGGTTG TTCACATGAG AATGAGCCAA TTCTCACCAC CATCATCGGA TCAACACCAC CACCGTCAAG
CCTCCCTAAT GCCTCATGAA CCCTCCAATT CATCATCAGA AAACATGTTC CAATCTAGCA GGGTCTTGTC TTCACAAAGC
AAGTCTTTTT TTGGCATGGA CATGGTCGTT GATCAGACCA TCATGGGGCA ATCTTTGTGG TCATACTAG

>Vigan.07G205900.01
MKENGRKLGT MSPCAACKLL RRRCTRDCVF APYFPADEPQ KFGSVHKVFG ASNVNKMLQE LPEHQRSDAV SSMVYEANAR
VRDPVYGCVG AISSLQQQVD ELQTQLALAQ AEVVHMRMSQ FSPPSSDQHH HRQASLMPHE PSNSSSENMF QSSRVLSSQS
KSFFGMDMVV DQTIMGQSLW SY*