GBrowse Details

Vigan.07G190400.01

Basic Information:
Name: Vigan.07G190400.01
Multiple alignment
Variant Information
Position: Chr07:26343662..26347328 (+ strand)
Length: 3667
Functional Information:
Description: Similar to Chloroplast 30S ribosomal protein 2. [V5N8J2, Phaseolus vulgaris]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:102.18,45.32,16.39,46.34,7.32,14.51,5.65,8.74
Arabidopsis thaliana homolog: AT3G52150.1
Automatic updates:
Name: NM_001361086 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RNA recognition motif (RRM) domain-containing protein (LOC100783567), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001361092 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RNA recognition motif (RRM) domain-containing protein (LOC100811197), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:26343662..26343778 (+ strand)
Length: 117
Type: five_prime_UTR
Position: Chr07:26343779..26344063 (+ strand)
Length: 285
Type: CDS
Position: Chr07:26344945..26345046 (+ strand)
Length: 102
Type: CDS
Position: Chr07:26345161..26345460 (+ strand)
Length: 300
Type: CDS
Position: Chr07:26346897..26346935 (+ strand)
Length: 39
Type: CDS
Position: Chr07:26346936..26347328 (+ strand)
Length: 393
Type: three_prime_UTR

>Vigan.07G190400.01 class=Sequence position=Chr07:26343662..26347328 (+ strand)
CAACACTACT TTAGATAACA AGATAAACCT CAGACTCTCT CACTCCAAAA TCAAAACCTC CATTTGTTGT TCAGTTATAA
TATTGTATTC CGTTTCAGAT AACACAGCAC AATAACAATG GCTTCTCTTC ACTCTTCTCT TCTATTGCCT CCGAATCTCC
TTTCCCTTAC TTCTCCTTCA AGTTCCCCTA CTCACATTCT CTTGAATATG AGACCCTCCA CCACCCACTT GCGACCCCTT
TTCACCACAC GGCGTCGTTT TGGGAGACCC TTCGCAGTGG CTGAGCAGGC AACGGTGACG GAGGCCGCAA GAAGGCTCTA
CGTTGGAAAC ATTCCCCGCA CTGTCAACAA CGATGAGCTC GCCAAGATTG TTCAAGAACA TGGCGGTGTT GAGAAAGCTG
AGGTTTTTAA ATTTTCAACC TTTCACCAAT TTTAAAGTTT TTTGTTTCCT AGGTTATTAG TTAAAGCTTT TCCTGTGTGG
GACTGCGCTG AATTAAGATA ATGTTGGGAC AAACTTCTGG TTAGGTGTTC TTAAAAAGAA AAATACCAAG AAAAAAAAAG
AATTTACTTC TGCAGCTAAA CTTAGCTTAT GCAAACAAAC AACTGTTATT GAAGTAGTGC ACTTGTTTTT GCTTATTAAA
TAAACATAGA AATGGGGTGT TCTTTTTGGT TTTATTTTTA TTTGATATTT GAGGGAAAGG TATGTTTTAC TAAGTAGTCT
GTATCAACTT ATAGAATTTT TTCACAAAGC ATGATTTGTG TGTATGTGAA AAACAGTGCC AGCTGGGGAT TCACTGATGT
AGAGCCTAAG GTGAGTTTGA GAGTTGGATT TTGGAAAACC TCTCTGATAA GGATAATAGA AAGGCATTAT CCCTTGTAAG
ATGATGAAAA CACGATTAAA TATGTTACAT AGTAGTGCCC TGCACCCTTT TGAAAAGTAA ACTGAAGTTA GAGTACAGTA
GCAGTTGAAG AGTAAAACTT ACTGAACTAT GAAATGTGTA CACGAAAAAT TGGTATCACC TTTTATGTAT TGTTATAGAT
TCTTTTGTAT GTTAAACTGC TCAATGGAAT GATTGTAGAT GTATTGACAT GATCTGAACA ATTTAGTGAA GGACCTGCAA
TACACGAATA TCCCTGGGAT TCAAAAATAC ACTAAATACT ATAGTATATT GATTAGTGCA TTTTATATAT CCACAAGTGA
CAACTTTATT TGTATGGTCT GTCAGAATAT ATGGGAATCC TTCATCTGTG TACTGTTAAC ATTTCTTAAT GCATGGCTCA
TAGGTTATGT ATGATAAATA CTCTGGAAGG AGCCGTCGCT TTGCGTTTGT TACAATGAAA ACTGTTGAGG ACGCAAATGC
TGTGATTGAG AAACTTAACG GCACTGTAAG TTTAATTGCA GAATTTGAAG GAACCTTTAG AAAGATTGTT AATGTTCATT
CAGCAGTTTA GACTTTATAT CCCTTCAAGG ACTTGTGAAA TTCATGTTTT CTATGGCAGG AAATTGGAGG GCGTGAGATT
AAAGTAAATG TTACTGAAAA ACCTTTATCA GCATCAGATT TGCCTTTATC CCAGGCTGAG GAATCTCAAT TTATTGACAG
TCCCCACAAG GTGTATGTGG GAAATCTAGC CAAGACAGTA ACAACTGATA CTCTTAAAAA GTTTTTTTCT GAGAAGGGAA
AAGTTCTGAG TGCCAAGGTT TCACGGGTCC CTGGTACCTC AAAATCCAGT GGGTATGGTT TTGTTACCTT TTCATCAGAA
GAGGATGTAG AAGCTGCAAT CTCGTCTTTC AACAATTCTG TAAGTTGTTT ACTTCAAGCT TAGATATCCA AATGTACTTA
AAATACATGA AACCTTAAAT ATAGCACCTA GAAGATGCGT TCCCTTGTCA GACCCCCAAA TTTTGGGAAA CATGCATCAG
AAGAAAGAAC ATGGAGATCA TTGGACCACT TGTGCCCATA TTGGGTTCCA GTTCTGATGT ATAGTTAGTT ATGAATCTGA
CAGTTACGTC AGATTCTATA AATTTTAGTA TTGACTGGTC TGAAAAGGGG AGAGAGAAAG ATGTTTACAG ATTGAGTGTA
TAGAAAGTAA TGTTTGAGAA TGGGGTTTTG TGAGAAAGAG AAGGGAACTT TTTTTTTCTT TTAATAAATA TTAATTAGTG
CATAGCTTTT TAAAATAGAA GAAAACATGA TAGATTAGCA TAGAATTAGT GTCCTATTCT TTTTACAAAT ATCTCTATTA
ATTTAAAAAT ACAAAGTCTA TCCTCCCTTT CTTTTCCTTC TAAAATTCCA CATCCAAACT TACTCTTAGG GAGGGAGAGC
TAGGAGTCTT GACAATTTCT AGGCAAGAGA GACCTATTGC ATTCTGCTGG TCATCTTTCT ATTGTGGTTC CTGTGAACTT
TACTTGAAGA AAGAATCTAG TTCAGTAAAA ATTCCATTAT TTGATTCCAG CTTTGTTTAT CTTTTTTATA ATCTGAACTA
GTTCTTACCA CTCTTTTTTG CAATCATGCT TATGGATAAC AGTGGTGCAG GTCTTATATA CTTGCTGTCA TCAATGTTAC
ACATGTTATA ATGTTGCATA CAATCTACTA AGTGAATCAA ACATAATCTC ATTTTAATTC CTTACCAATC TAAGTTCATC
CCAAGAAGAC AGGTAATCTG CATCAACTTT TTTTAATATA TAAGTAATAA ATAAAATGTT TCTTGGCACA ACCACAATGC
CTGCGTAATT ACCTATAGTG TAGCTCAATT GGAAACACAC GCTGAATTGT GAGGGAAGAA TAGAGTTTGA TTCCCACATT
ACACCCTTGA GGAGGGGTAA AGAGCTCTAA TTATGTCTAA TTTCTTAATC TATCATTAGT TTCATAATCA GCTCAAATCA
TCAGAACTTG CGAAGGTACA TTAGGGTCTC ACTTGAAAAT CAAAAGGCCT AATGGTGATT TATAAAGTAA AATAGCGTGC
TTAATTTCCA TTATCTAGTT TGCTTATAAA CATAGAAGTG CACATCCACA TTGCTAAAAG AATTATGTAA TAGATGGTTC
GTTCTCATCT CATCTCGTAT GTCTCCCTTT TTGTTATGCT TATCCATGTT GTCTATTAAT GATGTTTTGG TCTGGTTTTT
TAATATCACT GGATGCTGTA GATTGAAAAC GAGACTTTGA ACTAGTAATT AGTTTTGCTC TAAATGTTAA CTCTGAAAGT
GATTTGTTAT TTGTCTGATG TCTTGTTGAA TGCAGTCATT AGAAGGGCAA AAAATCCGAG TGAACAAGGC ATAGAGAATT
AGCAATGTTG CTGAGCATTT ATCTGACCAT GTACTGTCTA GCCAGAAAAA AGTAAACTTT GGGTGAGGCT GAAACCACTA
ACAAATTTCC TTGTCTCTTT GTATAGCATA AACCTAATCA TTTTCAGTTG ACAAGGTTCT ACAAAAAAAA ATAGTGGTTA
ATGCTTCTTG TAGACATTTC ACCTTGCTAT TTCTTCATCT TCATGTTGTT GCTCCCTTCT ACTCTACTCT GGTGATGTAA
CTCTTGTTTA TATATGCATG TATTCAATTC CATTTTTGTC TGAATTTGAG TTACCATAAA AACTGCACCA AGCATGCCTC
CAATTTTTCC GATTATTGCT CTTTCTTAGA TAATACCAAT CTATCATATA TTAAGTATTC TTGACAA

>Vigan.07G190400.01
CAACACTACT TTAGATAACA AGATAAACCT CAGACTCTCT CACTCCAAAA TCAAAACCTC CATTTGTTGT TCAGTTATAA
TATTGTATTC CGTTTCAGAT AACACAGCAC AATAACAATG GCTTCTCTTC ACTCTTCTCT TCTATTGCCT CCGAATCTCC
TTTCCCTTAC TTCTCCTTCA AGTTCCCCTA CTCACATTCT CTTGAATATG AGACCCTCCA CCACCCACTT GCGACCCCTT
TTCACCACAC GGCGTCGTTT TGGGAGACCC TTCGCAGTGG CTGAGCAGGC AACGGTGACG GAGGCCGCAA GAAGGCTCTA
CGTTGGAAAC ATTCCCCGCA CTGTCAACAA CGATGAGCTC GCCAAGATTG TTCAAGAACA TGGCGGTGTT GAGAAAGCTG
AGGTTATGTA TGATAAATAC TCTGGAAGGA GCCGTCGCTT TGCGTTTGTT ACAATGAAAA CTGTTGAGGA CGCAAATGCT
GTGATTGAGA AACTTAACGG CACTGAAATT GGAGGGCGTG AGATTAAAGT AAATGTTACT GAAAAACCTT TATCAGCATC
AGATTTGCCT TTATCCCAGG CTGAGGAATC TCAATTTATT GACAGTCCCC ACAAGGTGTA TGTGGGAAAT CTAGCCAAGA
CAGTAACAAC TGATACTCTT AAAAAGTTTT TTTCTGAGAA GGGAAAAGTT CTGAGTGCCA AGGTTTCACG GGTCCCTGGT
ACCTCAAAAT CCAGTGGGTA TGGTTTTGTT ACCTTTTCAT CAGAAGAGGA TGTAGAAGCT GCAATCTCGT CTTTCAACAA
TTCTTCATTA GAAGGGCAAA AAATCCGAGT GAACAAGGCA TAGAGAATTA GCAATGTTGC TGAGCATTTA TCTGACCATG
TACTGTCTAG CCAGAAAAAA GTAAACTTTG GGTGAGGCTG AAACCACTAA CAAATTTCCT TGTCTCTTTG TATAGCATAA
ACCTAATCAT TTTCAGTTGA CAAGGTTCTA CAAAAAAAAA TAGTGGTTAA TGCTTCTTGT AGACATTTCA CCTTGCTATT
TCTTCATCTT CATGTTGTTG CTCCCTTCTA CTCTACTCTG GTGATGTAAC TCTTGTTTAT ATATGCATGT ATTCAATTCC
ATTTTTGTCT GAATTTGAGT TACCATAAAA ACTGCACCAA GCATGCCTCC AATTTTTCCG ATTATTGCTC TTTCTTAGAT
AATACCAATC TATCATATAT TAAGTATTCT TGACAA

>Vigan.07G190400.01
ATGGCTTCTC TTCACTCTTC TCTTCTATTG CCTCCGAATC TCCTTTCCCT TACTTCTCCT TCAAGTTCCC CTACTCACAT
TCTCTTGAAT ATGAGACCCT CCACCACCCA CTTGCGACCC CTTTTCACCA CACGGCGTCG TTTTGGGAGA CCCTTCGCAG
TGGCTGAGCA GGCAACGGTG ACGGAGGCCG CAAGAAGGCT CTACGTTGGA AACATTCCCC GCACTGTCAA CAACGATGAG
CTCGCCAAGA TTGTTCAAGA ACATGGCGGT GTTGAGAAAG CTGAGGTTAT GTATGATAAA TACTCTGGAA GGAGCCGTCG
CTTTGCGTTT GTTACAATGA AAACTGTTGA GGACGCAAAT GCTGTGATTG AGAAACTTAA CGGCACTGAA ATTGGAGGGC
GTGAGATTAA AGTAAATGTT ACTGAAAAAC CTTTATCAGC ATCAGATTTG CCTTTATCCC AGGCTGAGGA ATCTCAATTT
ATTGACAGTC CCCACAAGGT GTATGTGGGA AATCTAGCCA AGACAGTAAC AACTGATACT CTTAAAAAGT TTTTTTCTGA
GAAGGGAAAA GTTCTGAGTG CCAAGGTTTC ACGGGTCCCT GGTACCTCAA AATCCAGTGG GTATGGTTTT GTTACCTTTT
CATCAGAAGA GGATGTAGAA GCTGCAATCT CGTCTTTCAA CAATTCTTCA TTAGAAGGGC AAAAAATCCG AGTGAACAAG
GCATAG

>Vigan.07G190400.01
MASLHSSLLL PPNLLSLTSP SSSPTHILLN MRPSTTHLRP LFTTRRRFGR PFAVAEQATV TEAARRLYVG NIPRTVNNDE
LAKIVQEHGG VEKAEVMYDK YSGRSRRFAF VTMKTVEDAN AVIEKLNGTE IGGREIKVNV TEKPLSASDL PLSQAEESQF
IDSPHKVYVG NLAKTVTTDT LKKFFSEKGK VLSAKVSRVP GTSKSSGYGF VTFSSEEDVE AAISSFNNSS LEGQKIRVNK
A*