GBrowse Details

Vigan.07G144200.01

Basic Information:
Name: Vigan.07G144200.01
Multiple alignment
Variant Information
Position: Chr07:17771444..17774924 (- strand)
Length: 3481
Functional Information:
Description: Similar to Uncharacterized protein. [I1M2Z5, Glycine max]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.38,35.04,71.55,36.44,87.03,139.50,80.19,80.04
Arabidopsis thaliana homolog: AT1G16920.1
Automatic updates:
Name: BT097430 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-16K15 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249030 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GTP-binding protein (LOC547654), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001252726 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ras-related protein RABA1b-like (LOC100810759), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:17771444..17771740 (- strand)
Length: 297
Type: three_prime_UTR
Position: Chr07:17771741..17772173 (- strand)
Length: 433
Type: CDS
Position: Chr07:17774511..17774731 (- strand)
Length: 221
Type: CDS
Position: Chr07:17774732..17774924 (- strand)
Length: 193
Type: five_prime_UTR

>Vigan.07G144200.01 class=Sequence position=Chr07:17771444..17774924 (- strand)
AAAACAAAGA CAAAAAAAAG AAAATAAGAA AATGATTTGA TGAGTGAGTG AGTGAGTGGC GCTTTTTTAA GCGTTTTCTT
TTCACATACT CTGCTTTTTC TTCTTCTCTT CTTTTCACTT CTCTCTTCTT TCCTTCGCTT CGCTTTTTAT TTTCCATTCA
CAGCACACAA GAGAACACGC AGCAGCACCA CCAATGGCGG GTTACAGAGC CGACGACGAC TACGACTACC TCTTCAAGGT
TGTCCTCATC GGCGACTCCG GCGTCGGCAA GTCCAACCTC CTTTCTCGTT TCACCAAGAA CGAGTTCAAC TTGGAGTCCA
AGTCCACCAT TGGGGTGGAG TTTGCCACTC GCACCTTGAA CGTCGATTCC AAAGTCATCA AGGCCCAGAT CTGGGACACC
GCTGGCCAAG AAAGGTTTTG CCCCTTCTAT ATCTCCTTCC CCTTCTCACA ATGCAAGATC ATGCTTAACA CACTAATGGG
TACGCTGGTT TCAATTCAAA AACCCTACTT TTTGATGGTC AACAATTATG GGGAAAAAAG TGATTTTTCA AGGGTTGGTT
TACTTGGCTG GATCTAGTTT TGCGCATGCA CAACTGGGTT TTTGTTGTGA AGTGAAGTGT AATTGGGTGG ATCGTGATCT
AGTAAGGAAG CTCGCTTTAA CTATTATAAT GTGAATGAGT TGTTAATTGG TGTTAAAAAA GGGTAAGTGA AGTGTGTGTT
TGAGGAATCA GCCAATTTGG TTTGTGACTT TTGTTGCTTG TCTTGTGCTA GATTTGGTTT GTGGAGTTGG TAAGACTTTT
TGTTTATGAG ATCGGCGTGG CGATGCGGTG TTTAAAAAAT GGAATGAACC GGATGTTGTT GATGTCATTC TTTGATGCGC
TGTTGGTGTG AAATTGGAAT AGATTATTTC CTGATGATTT GTTCCGTGTT ATTTGATGAG TTTGGCATCT TGTGTGCGAG
TGTTGACATG GTCAAATTTG TTAAATGGGG TTTCAACATT GAACTGGATG ATGGTGTGCG ATTGAAACTA GTGATTTGTA
AAGTCTCTAA ATAGAAATTT GTGTAGCACT TGAATTTGAA ATGCATTGAA TTGGAAGGAA CACTGAATTC AGTTGAACAT
GACTAATAAC TAATTGATAT CTGACTAGAT TGTAGGTTGT AGTTTGCACT ACATTTGGAT CTTGTAATGG CTCATGCACA
ATTAATGCTT CATTGCATGG TTTTCTCCTT CTTGAGAAAA GGCTATCTAC TGTTGTGTAT CAGTGATTTC TCTTTTCACT
ATTTGGTTCA ATGTCGTATT GTCTTTGTCT GGTAGGTGTT GCTATTGAAA ATACAATACT GATAACTTAA ACTATTTATA
CTCTATTTGT CTGGAAGTGG ATATTCCCAA TGTGAAAAAC TTAAAATTTT TCTATGATTT GATTTTTAGA ATTATTCGCT
TCATGATCTG ACCTTGGAAT TATTGTGCAA ATTTCTTCAT TTTAGATCTT ACTTCTATGG GTAAATATGC TGAACTTTAG
CTTTTTCATT TCTACCTTAT AGCTTGGGAA GGGTTTGAAA GATGTATACA TGTGTGGATT TTTTTATCAT ATGTGATCTC
AGATGAACTT TGGCCTGGTT TTGCACATAA AACAAGCATG CCTTGATCAA GCATATGCCA ATAGAAATTG AGTATTTCAT
TTGATACATG TTGTATGAAC TGAAAGATCC CTTGAAAAGT TAATTTCTGA CCTTTTTCTT GGGCTACGTA CTTGAGTGAT
TAATCATACT CCTTGGTTGC ATCATTCCAT TTTTGTGGAA ACTCTAGTGA GGTTATTGAG CCTTATAGAA TAATAAACAA
GTTCTGTTTT ATACTAAAGG AAAATTGCAT CTGTAAGTTT TTAGGCTGAC ACACCAATGA TATTTTAATC ACTCATCGTC
ATCCTTGCTG TACTCATTAC AAACTATTCC AATTTGAACA ACCAACATGA TGGTGAAAAT TTGGTTGAAT TATTAAGTAA
GCCCCTTAAC TCTGGAAATT TTCAAGCAGT CCCTTTAACT AATTTTTTTT TATTAGGTTC CTTGACGATG CCATTTTTTA
ATCGAGTCCC CAGGGTTTTT AAAACTGCCA TAAATTGTGA TTTTCTAGCA GTTTCAAGCT GCAAAAAAAC TAACCTAGGG
ACTTGCTTTT TTTGGTTTAG GGATCCAATT AAAACAAAAG TTTAGGGACC TATTTGAAAT TTTAAAATTA GTTCAAGGAT
CTACTTAGCA GTTTAACCTA AAAGTTTATT TTACAATTTC AATATTTTGG CCCATAGTTC TATTTACTGT CAATTATTCC
CTTCAAAAGT TCAACAAACT GTGGCTCTTT CTTCATCAAG ATTTCCTTGA AAAAAACTCT ACATAACTCC CCTTTCTCCC
AACCAAAACC CTTATAAGCA CCACCTATTC TGGTAAGAAT AAAGTGTTGT TGAACTTTTA CTGCATGCAT CACTGACTTT
GTATTCACCC TCTTTGTGGA AAAGAATGAT GTAATATGGA TTATCCTACT TTCAAGTGCT GGATATGGTC TTGCGGTCTT
ATTCAAGTTC GAAACAAATG TCACAAATGT GTCCTCTTGG TTTCTGTTCT CTTGGCTCAT GAACACCTTA ATTAATGCGA
TTCTACGTGG ATGCTTAACA AGCCATTTTT TTTTTGTTAA TCACATGTAT CATGTTAACC AGACTTCCCA CAAACTTGCA
TCTTGTTGAT TCACAGTGTT TCTCTTTGCA GGTATCGTGC GATCACCAGT GCATACTACC GCGGCGCTGT GGGTGCACTT
CTGGTGTACG ATGTGACTCG GCATGCAACG TTCGAGAATG TTGACAGATG GCTGAAAGAG CTGCGAAACC ACACAGATGC
TAACATTGTG GTGATGCTTG TTGGAAACAA ATCAGACCTT CGGCACCTGG TAGCAGTTAC AACAGAAGAT GGGAAGTCGT
ATGCTGAGAA AGAATCACTT TACTTCATGG AAACCTCAGC TCTGGAGGCC ACCAATGTAG AGAATGCATT TGCTGAAGTT
CTGACTCAAA TCTACCGCAT TGTTAGCAAG AAAGCAGTAG AGGGTGCTGA GAATGGAACT GCATCTGTGC CTGCAAAGGG
GGAGAAAATT GACCTCAAAA ATGATGTCTC TGCTTTGAAG AGAGTTGGAT GCTGCTCAAG CTGAGGGAGG TTCTGAAGTT
GGAAAACATA GCTGTTCAAT TGGTTGGTAT CGGCTCTGTT GTACGTGTAA TATTCTGAGA AATACGAACT AGAAGAAAAG
TCAAATTTAA TGTCATAGCT TGTTAGACTA TTTGTGTAAC CTTAAAAAAA CTAAGTTTGG TGTTTCAATA GGAGCTGCTG
GAGAAGAAAG TTGATTGCTA GTCTTGTTGT AGTAGTGCTG TTATTATTAT TGTTTTTGAA ATGTTTTCAC ATCCAAAGAG
GTTCAAGCTT GGAATTAATT GAAGCTATTG TTTCATTTAA A

>Vigan.07G144200.01
AAAACAAAGA CAAAAAAAAG AAAATAAGAA AATGATTTGA TGAGTGAGTG AGTGAGTGGC GCTTTTTTAA GCGTTTTCTT
TTCACATACT CTGCTTTTTC TTCTTCTCTT CTTTTCACTT CTCTCTTCTT TCCTTCGCTT CGCTTTTTAT TTTCCATTCA
CAGCACACAA GAGAACACGC AGCAGCACCA CCAATGGCGG GTTACAGAGC CGACGACGAC TACGACTACC TCTTCAAGGT
TGTCCTCATC GGCGACTCCG GCGTCGGCAA GTCCAACCTC CTTTCTCGTT TCACCAAGAA CGAGTTCAAC TTGGAGTCCA
AGTCCACCAT TGGGGTGGAG TTTGCCACTC GCACCTTGAA CGTCGATTCC AAAGTCATCA AGGCCCAGAT CTGGGACACC
GCTGGCCAAG AAAGGTATCG TGCGATCACC AGTGCATACT ACCGCGGCGC TGTGGGTGCA CTTCTGGTGT ACGATGTGAC
TCGGCATGCA ACGTTCGAGA ATGTTGACAG ATGGCTGAAA GAGCTGCGAA ACCACACAGA TGCTAACATT GTGGTGATGC
TTGTTGGAAA CAAATCAGAC CTTCGGCACC TGGTAGCAGT TACAACAGAA GATGGGAAGT CGTATGCTGA GAAAGAATCA
CTTTACTTCA TGGAAACCTC AGCTCTGGAG GCCACCAATG TAGAGAATGC ATTTGCTGAA GTTCTGACTC AAATCTACCG
CATTGTTAGC AAGAAAGCAG TAGAGGGTGC TGAGAATGGA ACTGCATCTG TGCCTGCAAA GGGGGAGAAA ATTGACCTCA
AAAATGATGT CTCTGCTTTG AAGAGAGTTG GATGCTGCTC AAGCTGAGGG AGGTTCTGAA GTTGGAAAAC ATAGCTGTTC
AATTGGTTGG TATCGGCTCT GTTGTACGTG TAATATTCTG AGAAATACGA ACTAGAAGAA AAGTCAAATT TAATGTCATA
GCTTGTTAGA CTATTTGTGT AACCTTAAAA AAACTAAGTT TGGTGTTTCA ATAGGAGCTG CTGGAGAAGA AAGTTGATTG
CTAGTCTTGT TGTAGTAGTG CTGTTATTAT TATTGTTTTT GAAATGTTTT CACATCCAAA GAGGTTCAAG CTTGGAATTA
ATTGAAGCTA TTGTTTCATT TAAA

>Vigan.07G144200.01
ATGGCGGGTT ACAGAGCCGA CGACGACTAC GACTACCTCT TCAAGGTTGT CCTCATCGGC GACTCCGGCG TCGGCAAGTC
CAACCTCCTT TCTCGTTTCA CCAAGAACGA GTTCAACTTG GAGTCCAAGT CCACCATTGG GGTGGAGTTT GCCACTCGCA
CCTTGAACGT CGATTCCAAA GTCATCAAGG CCCAGATCTG GGACACCGCT GGCCAAGAAA GGTATCGTGC GATCACCAGT
GCATACTACC GCGGCGCTGT GGGTGCACTT CTGGTGTACG ATGTGACTCG GCATGCAACG TTCGAGAATG TTGACAGATG
GCTGAAAGAG CTGCGAAACC ACACAGATGC TAACATTGTG GTGATGCTTG TTGGAAACAA ATCAGACCTT CGGCACCTGG
TAGCAGTTAC AACAGAAGAT GGGAAGTCGT ATGCTGAGAA AGAATCACTT TACTTCATGG AAACCTCAGC TCTGGAGGCC
ACCAATGTAG AGAATGCATT TGCTGAAGTT CTGACTCAAA TCTACCGCAT TGTTAGCAAG AAAGCAGTAG AGGGTGCTGA
GAATGGAACT GCATCTGTGC CTGCAAAGGG GGAGAAAATT GACCTCAAAA ATGATGTCTC TGCTTTGAAG AGAGTTGGAT
GCTGCTCAAG CTGA

>Vigan.07G144200.01
MAGYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATRTLNVDSK VIKAQIWDTA GQERYRAITS
AYYRGAVGAL LVYDVTRHAT FENVDRWLKE LRNHTDANIV VMLVGNKSDL RHLVAVTTED GKSYAEKESL YFMETSALEA
TNVENAFAEV LTQIYRIVSK KAVEGAENGT ASVPAKGEKI DLKNDVSALK RVGCCSS*