GBrowse Details

Vigan.07G135500.01

Basic Information:
Name: Vigan.07G135500.01
Multiple alignment
Variant Information
Position: Chr07:15262661..15265480 (- strand)
Length: 2820
Functional Information:
Description: Similar to Uncharacterized protein. [I1M355, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
InterPro: NAC domain (IPR003441)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.05,1.96,1.19,0.11,1.97,0.30,5.47,0.45
Arabidopsis thaliana homolog: AT5G53950.1
Automatic updates:
Name: NM_001287453 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein CUP-SHAPED COTYLEDON 2-like (NLP4), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:15262661..15263077 (- strand)
Length: 417
Type: three_prime_UTR
Position: Chr07:15263078..15263662 (- strand)
Length: 585
Type: CDS
Position: Chr07:15264278..15264561 (- strand)
Length: 284
Type: CDS
Position: Chr07:15264703..15264886 (- strand)
Length: 184
Type: CDS
Position: Chr07:15264887..15265480 (- strand)
Length: 594
Type: five_prime_UTR

>Vigan.07G135500.01 class=Sequence position=Chr07:15262661..15265480 (- strand)
TTTCTGTTCC CTTTCTTACA ATTTCTTCAC TGACAAAGGA ATACCTGCAC ATTTCCTCAC GCACGCACGC ATACTCAATC
GCCACCACTC CCTCGTACAT CACCCTCTCT TTCTCTCTCT CCCCTTCCTC TTTCTCTTTC TCTTTCTCTC TCTAGCTATG
TGGATCATGA TGAGGACCCT GTCAGAGAGT AGAGAGAGCT ATCAGAAGAG GATAGTGCAG AGAAAACACA GATTTTTCCA
GCCATATCAT ACCTTATTAT TTCACCTTTT TCTCTCTGCC ACCCGATTCA TCAAATCCCC ATGAGACCAC CCCTTATAAT
CCACCCTCTC ATCTCCAATC CCAAACCAAA AAGCCTCACC CTCTAAAGTG AAAAAAAAAA AAAAAAGTGA CCACCCAAAG
CCCAAGCCAA GTTATAAATC CCTCTTTCAC TATTTTGTTT CTGTTGTTCC CCTTCCCCAT GCCATGACTC TCATCTCCTA
TATATAATCA AAGCCATAAA GTGTTAGCAT CCAAGATTCT CTTCTTCTGG TTTCATTAAT TTCTCTCACA CTTTTCACCT
CCCTTTTGCT AGTGCTCCTT CTTCCTTTTC TCTGATGGAC TCCTCCTACC ATCACTTGGA CCACACTGAA GCTCATCTGC
CACCAGGCTT CAGGTTCCAT CCCACTGACG AGGAGCTCAT AACGTACTAC CTTCTCAAAA AGGTTCTAGA CAGCAACTTC
ACTGGTAGAG CCATAGCTGA AGTAGACCTT AACAAAAGTG AACCATGGGA GCTCCCAGGT ACACGCTCCA CAACCGTTTC
TTTTTCTTTC TCTTTCGTTC ACTTGTTCCT TGTTAATCAC TTCGTACTTT CCATAGTGGT AGCACAAAGA AGTTTATTTT
TGTTTTCCTT CTAACTTTTT GGTTGCTTCT TTCTGGCAGA GAAAGCTAAA ATGGGTGAGA AAGAGTGGTA CTTCTTCAGC
TTACGTGACA GGAAGTACCC AACTGGGTTA CGAACCAATA GGGCTACCGA AGCTGGTTAC TGGAAAGCCA CTGGGAAAGA
TAGAGAGATT TACAGCTCCA AAACTTGTTC TTTGGTCGGG ATGAAGAAAA CCTTGGTTTT CTACCGCGGT AGAGCTCCCA
AGGGGGAGAA AAGTAACTGG GTCATGCATG AGTACCGGCT GGAAGGCAAA TTTGCTTACC ATTACCTTTC TCGCAACTCC
AAGGTCAGTA TTATTTTATT TAAATAATTT ATCTCTTTAA AATATCCTAT TTTGTGTTGT TACATTCAAA GCATTGAAGA
ATGTGTACCT TTTAACCCAT GATGAGCCGC ATTTTAACCA TCCAAATTTG CAGTGAAGGA ACTTTAGTTA GGTGGAATCT
GGTTTTCCTT TAGCCTTCCA TAAGTAGGTT CCATTTACCA ATGTTTTTGA TGAGTTTTCC CTTTCAATTC TTTCCATGTT
TTGGTTCTCG ATTAAGATTT TGTTTCTCTT ACCTTCCTTG TTCTCGCTCA ATCTCCTCAC AACAAATGTT TCTTCTCCCT
TTTGACCTTC AGTTATTACC CTCAGGTTCA TCAAATGTTT GTCAATTTTC TTTCTGTCAA AACATGGTTG CATGAGCCCC
ACAATCTCAG CTAATTATTT AAAACGTGGT TATTTCTCGT GATTCATATT CCGTTTTTGC AGAATGATTT AACAGATTTG
CACAGCAACA GCTTTTAACA CTCGACTATG TTCCTAAGAA CAATTTAAGA ACAGTTATAA TTTATTTGGT TCTATGTCAC
ATGCATTAAT GAATATTGTT GGTGTTGCAC TAACACGAAC CCTTGTAATT TAATGAAGGA CGAGTGGGTC ATATCTCGCG
TGTTCCAAAA GAGCAACACA ACCAACGGAG GCTCAGTTAT GTCTGCTTCG AGTGGCTCCA AGAAAACGAG AATGAACACC
ACCAACAGCA CTCTCTGCCC AGAACCAAGT TCACCCTCTT CAGTTTACCT TCCGCCTCTT CTGGACTCTT CTCCCTACAC
CACAACAACC CCAGTAAACT TCACTGACCG TAACAACTGT TCCTACGACA GCACCACCAA AAAGGAGCAC GTGTCCTGTT
TCTCCACAAT TGCTGCAGCC ACCGCTGCTG TTGTCTCCCC CAACAACTTC ACCAATGCAA GCTTCGACCT TCCACCATCT
CAGCCTCTAG GAGTGGATCC CTTCGCTAGG TTTCAGAGAA ACGTTGGTCT CTCCGCCTTC CCAAGTTTGA GGTCACTGCA
AGACAACCTC CAGCTACCGT TCTTTTTTCC TCCGGCAGCA CAGCCCTTGG GCGGTGCCTC CCGTGAACTC CTCTGGCCGA
TGCCGGAGGA GCAAAGGCTG GTCGATGCGG CCCCCAACAT TCCACTGGGT GTGTCGGAGC TTGATTGTAT GTGGGGATAC
TAGTTTATCT TTTGAAGACC GTTGACAGCG AAATCAAGTC ATTGATAAGC ACAGTTCCTC ATGTTATGTT TTTTAAGCAT
TTCAGTTATG TTCCATAATG GCCTTGTATG GCTTGAACTA CGATTATCGC ATTCAGTGTT TTTGTTTTCG TGTGTTAACT
AGGGCTAGTT GATGTAACGG TAGTTTGGTT ATTATGTGGT ATGGTCCACT TTTGGATTTT TGTTCTTGGA AGTGTTTGCG
ATGTCTGACG TGTTTATCGT GAGAGTAAAT GCATGTTATT AAAGAGTCTC AGATCGTGTG GGGTTTGATT TTGATCTTTG
GACCATTACA GGATTTGTGT CTCTGGAAAT CTTTGCGTTT TCTGCGTTTG AGTTATCGTC TATGAACCGT TATAGAATTA
CAAATGTTTG CGTTTCTGAC 

>Vigan.07G135500.01
TTTCTGTTCC CTTTCTTACA ATTTCTTCAC TGACAAAGGA ATACCTGCAC ATTTCCTCAC GCACGCACGC ATACTCAATC
GCCACCACTC CCTCGTACAT CACCCTCTCT TTCTCTCTCT CCCCTTCCTC TTTCTCTTTC TCTTTCTCTC TCTAGCTATG
TGGATCATGA TGAGGACCCT GTCAGAGAGT AGAGAGAGCT ATCAGAAGAG GATAGTGCAG AGAAAACACA GATTTTTCCA
GCCATATCAT ACCTTATTAT TTCACCTTTT TCTCTCTGCC ACCCGATTCA TCAAATCCCC ATGAGACCAC CCCTTATAAT
CCACCCTCTC ATCTCCAATC CCAAACCAAA AAGCCTCACC CTCTAAAGTG AAAAAAAAAA AAAAAAGTGA CCACCCAAAG
CCCAAGCCAA GTTATAAATC CCTCTTTCAC TATTTTGTTT CTGTTGTTCC CCTTCCCCAT GCCATGACTC TCATCTCCTA
TATATAATCA AAGCCATAAA GTGTTAGCAT CCAAGATTCT CTTCTTCTGG TTTCATTAAT TTCTCTCACA CTTTTCACCT
CCCTTTTGCT AGTGCTCCTT CTTCCTTTTC TCTGATGGAC TCCTCCTACC ATCACTTGGA CCACACTGAA GCTCATCTGC
CACCAGGCTT CAGGTTCCAT CCCACTGACG AGGAGCTCAT AACGTACTAC CTTCTCAAAA AGGTTCTAGA CAGCAACTTC
ACTGGTAGAG CCATAGCTGA AGTAGACCTT AACAAAAGTG AACCATGGGA GCTCCCAGAG AAAGCTAAAA TGGGTGAGAA
AGAGTGGTAC TTCTTCAGCT TACGTGACAG GAAGTACCCA ACTGGGTTAC GAACCAATAG GGCTACCGAA GCTGGTTACT
GGAAAGCCAC TGGGAAAGAT AGAGAGATTT ACAGCTCCAA AACTTGTTCT TTGGTCGGGA TGAAGAAAAC CTTGGTTTTC
TACCGCGGTA GAGCTCCCAA GGGGGAGAAA AGTAACTGGG TCATGCATGA GTACCGGCTG GAAGGCAAAT TTGCTTACCA
TTACCTTTCT CGCAACTCCA AGGACGAGTG GGTCATATCT CGCGTGTTCC AAAAGAGCAA CACAACCAAC GGAGGCTCAG
TTATGTCTGC TTCGAGTGGC TCCAAGAAAA CGAGAATGAA CACCACCAAC AGCACTCTCT GCCCAGAACC AAGTTCACCC
TCTTCAGTTT ACCTTCCGCC TCTTCTGGAC TCTTCTCCCT ACACCACAAC AACCCCAGTA AACTTCACTG ACCGTAACAA
CTGTTCCTAC GACAGCACCA CCAAAAAGGA GCACGTGTCC TGTTTCTCCA CAATTGCTGC AGCCACCGCT GCTGTTGTCT
CCCCCAACAA CTTCACCAAT GCAAGCTTCG ACCTTCCACC ATCTCAGCCT CTAGGAGTGG ATCCCTTCGC TAGGTTTCAG
AGAAACGTTG GTCTCTCCGC CTTCCCAAGT TTGAGGTCAC TGCAAGACAA CCTCCAGCTA CCGTTCTTTT TTCCTCCGGC
AGCACAGCCC TTGGGCGGTG CCTCCCGTGA ACTCCTCTGG CCGATGCCGG AGGAGCAAAG GCTGGTCGAT GCGGCCCCCA
ACATTCCACT GGGTGTGTCG GAGCTTGATT GTATGTGGGG ATACTAGTTT ATCTTTTGAA GACCGTTGAC AGCGAAATCA
AGTCATTGAT AAGCACAGTT CCTCATGTTA TGTTTTTTAA GCATTTCAGT TATGTTCCAT AATGGCCTTG TATGGCTTGA
ACTACGATTA TCGCATTCAG TGTTTTTGTT TTCGTGTGTT AACTAGGGCT AGTTGATGTA ACGGTAGTTT GGTTATTATG
TGGTATGGTC CACTTTTGGA TTTTTGTTCT TGGAAGTGTT TGCGATGTCT GACGTGTTTA TCGTGAGAGT AAATGCATGT
TATTAAAGAG TCTCAGATCG TGTGGGGTTT GATTTTGATC TTTGGACCAT TACAGGATTT GTGTCTCTGG AAATCTTTGC
GTTTTCTGCG TTTGAGTTAT CGTCTATGAA CCGTTATAGA ATTACAAATG TTTGCGTTTC TGAC

>Vigan.07G135500.01
ATGGACTCCT CCTACCATCA CTTGGACCAC ACTGAAGCTC ATCTGCCACC AGGCTTCAGG TTCCATCCCA CTGACGAGGA
GCTCATAACG TACTACCTTC TCAAAAAGGT TCTAGACAGC AACTTCACTG GTAGAGCCAT AGCTGAAGTA GACCTTAACA
AAAGTGAACC ATGGGAGCTC CCAGAGAAAG CTAAAATGGG TGAGAAAGAG TGGTACTTCT TCAGCTTACG TGACAGGAAG
TACCCAACTG GGTTACGAAC CAATAGGGCT ACCGAAGCTG GTTACTGGAA AGCCACTGGG AAAGATAGAG AGATTTACAG
CTCCAAAACT TGTTCTTTGG TCGGGATGAA GAAAACCTTG GTTTTCTACC GCGGTAGAGC TCCCAAGGGG GAGAAAAGTA
ACTGGGTCAT GCATGAGTAC CGGCTGGAAG GCAAATTTGC TTACCATTAC CTTTCTCGCA ACTCCAAGGA CGAGTGGGTC
ATATCTCGCG TGTTCCAAAA GAGCAACACA ACCAACGGAG GCTCAGTTAT GTCTGCTTCG AGTGGCTCCA AGAAAACGAG
AATGAACACC ACCAACAGCA CTCTCTGCCC AGAACCAAGT TCACCCTCTT CAGTTTACCT TCCGCCTCTT CTGGACTCTT
CTCCCTACAC CACAACAACC CCAGTAAACT TCACTGACCG TAACAACTGT TCCTACGACA GCACCACCAA AAAGGAGCAC
GTGTCCTGTT TCTCCACAAT TGCTGCAGCC ACCGCTGCTG TTGTCTCCCC CAACAACTTC ACCAATGCAA GCTTCGACCT
TCCACCATCT CAGCCTCTAG GAGTGGATCC CTTCGCTAGG TTTCAGAGAA ACGTTGGTCT CTCCGCCTTC CCAAGTTTGA
GGTCACTGCA AGACAACCTC CAGCTACCGT TCTTTTTTCC TCCGGCAGCA CAGCCCTTGG GCGGTGCCTC CCGTGAACTC
CTCTGGCCGA TGCCGGAGGA GCAAAGGCTG GTCGATGCGG CCCCCAACAT TCCACTGGGT GTGTCGGAGC TTGATTGTAT
GTGGGGATAC TAG

>Vigan.07G135500.01
MDSSYHHLDH TEAHLPPGFR FHPTDEELIT YYLLKKVLDS NFTGRAIAEV DLNKSEPWEL PEKAKMGEKE WYFFSLRDRK
YPTGLRTNRA TEAGYWKATG KDREIYSSKT CSLVGMKKTL VFYRGRAPKG EKSNWVMHEY RLEGKFAYHY LSRNSKDEWV
ISRVFQKSNT TNGGSVMSAS SGSKKTRMNT TNSTLCPEPS SPSSVYLPPL LDSSPYTTTT PVNFTDRNNC SYDSTTKKEH
VSCFSTIAAA TAAVVSPNNF TNASFDLPPS QPLGVDPFAR FQRNVGLSAF PSLRSLQDNL QLPFFFPPAA QPLGGASREL
LWPMPEEQRL VDAAPNIPLG VSELDCMWGY *