GBrowse Details

Vigan.07G132700.01

Basic Information:
Name: Vigan.07G132700.01
Multiple alignment
Variant Information
Position: Chr07:14496380..14501956 (+ strand)
Length: 5577
Functional Information:
Description: Similar to RNA-binding protein YlmH-like isoform X1. [XP_004488725.1, Cicer arietinum]
GO: Molecular Function: RNA binding (GO:0003723)
InterPro: RNA-binding S4 domain (IPR002942)
Photosystem II S4 (IPR017506)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.70,2.84,3.59,9.83,2.32,4.00,1.03,3.14
Arabidopsis thaliana homolog: AT1G53120.1
Automatic updates:
Name: NM_001254227 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative RNA-binding protein ylmH-like (LOC100793767), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:14496380..14496420 (+ strand)
Length: 41
Type: five_prime_UTR
Position: Chr07:14496421..14496574 (+ strand)
Length: 154
Type: CDS
Position: Chr07:14498817..14498926 (+ strand)
Length: 110
Type: CDS
Position: Chr07:14499129..14499260 (+ strand)
Length: 132
Type: CDS
Position: Chr07:14499348..14499421 (+ strand)
Length: 74
Type: CDS
Position: Chr07:14499517..14499622 (+ strand)
Length: 106
Type: CDS
Position: Chr07:14500187..14500255 (+ strand)
Length: 69
Type: CDS
Position: Chr07:14500649..14500713 (+ strand)
Length: 65
Type: CDS
Position: Chr07:14500791..14500889 (+ strand)
Length: 99
Type: CDS
Position: Chr07:14501467..14501566 (+ strand)
Length: 100
Type: CDS
Position: Chr07:14501656..14501718 (+ strand)
Length: 63
Type: CDS
Position: Chr07:14501719..14501956 (+ strand)
Length: 238
Type: three_prime_UTR

>Vigan.07G132700.01 class=Sequence position=Chr07:14496380..14501956 (+ strand)
GTTGGTGAGT TCGAGGTAAT CCCAACAAAG GTGGAACCAC CATGGCTGCA GCCACAAGCT TTGGAACTGC ATGTATTCTA
AGAAGAGCAG CTCAGGCATT TGCAGTATCA CATTCTCATA TCATCAACAG CAATGCCACC TTCTCTTTTC AAAGGAAACT
TTCCTCTCAT ATTCTATCCG TTTCTACTAG TTCAGGTTTA TACTTACTTC TTCCAGTTTG AATTTTCCTT TATTTATTGA
TGCTACCTGT ATGTAATCTG ATCCTTTTTT ACCTTCGCTT GCGCATTATG TTTACCCTCT TAAAAGCTGC AATCTTTATG
ATATAAGAAA TTGTGGGTGT GTGGTTTGAC AGAGTGGAGA ATTCTAATAA TACCCCTTCA TGAAGATAAA GATAAAAGAA
AGGGGTTTAT CGATTGCAGC CACAACAAAG TTAATAACTG TCGTGTTCTG AAAATTTGAA ATACCAAATT CTAACAATAA
GAAACAATAA CTTTTTATTC AATCATTCAA GACACATACT AACTGCCATC TTATTGTGTC TGAAATTGGT AAACCTCGTA
ATCTTATCTT AATCTTCATT ACCTGTTGTT TTAATTTTGT GGTACATTAT GTTTATAACT CACGTGTATA TGAATTTATA
TTGCTTAATG GACAAAGGGG TTTCATGAAT TTTGTATGCA TGCCGTTTGT AATTTGGCAA GGGTGTTCCT CTTGTTTCAC
TGATTATATT GAACTTGATA TACTGTACGC CTGCTATAGT GGAGGGGCTT TGGTATTGTG TTATAATAGT AGCCAGGGAG
CGTTTTAGAG GGGGGAGTTT TTTTGGCTAG AGACAAGGGG AACCTCTTTG GTGTTTCTAG AGGAGCCTAG CTCTGAGTTG
TAGGATTTGT TATCCTTCTG TTTTTCCTTT AACTTGCAAA TCATACAGAA TGTCAGTGTT TACTTATATT TTCTGCTTTC
TTCTTAATTT TGAGGTGTGG ATCTGTAACA GGAACTAAGA GAAACATTAT CAATGTTGTT GAGGACTGAT GTGTTATAAA
TGAAACTCAT AGAATAATAT TGATTAAAGT GCTTGACAGG TCAGTTAACC AAATCAACTA GAGCTGTGAT CGGCATTTTG
AAGAAGTGAC CTAAAATGTT TTAGCTGTGA TGTTTTTGGC TATCTGGGGG AATATGTACT TGGATGAAAG TTGACGGTTT
TGATCGGGCT CAACCTAGTG ACGAGTGATA AAAGATTTCA GGAAATGAGT GCTAACGTAC ATGACTTTGT TGGCTTTTAA
AAGTAGGTTT TTTCTTGGTG ATGAGAAAAC AGTGTAGTGT AGGTTGGTTT GGTGAAGACT GAAGAATGCC AAAATGTGGG
TAGGCATGTT GATCTTAGAA AAATACGCTT TCTGTGCTCA TGAAAATATT AACTATTGAT TACCAGGGAA AGGCTTCGGG
ACAAGGAGTG TTAAGTACTT GCGTTTAGTT TAAGGGGAAA TTGTTGAGAA TTAAATTGTC ACAGGAATGT GGGTTTGAGT
GGACTAGTGA AGTAGTTCTT GTGTGGATAA TAATGAACCA GGTAAGGAGT GTATAATCTG GAAGGACTTT TGAACATAAT
GCCTAAAACT TTTGAATTGA GACAAAGTGA TGGTCCATGG CAGTGTTTTC AATGTTATGT CCACTGAAAT ATATATCCCA
CTTGTTTTCG ATTCCAACTT CTGGCTCAAC ATTGTAGCAA TCTCCATATG TTGCTACCGA TGATCTGATT CTTTTCTTGA
GAAACTGGGG CAATTTGGTA TAAGGTTGTT CTAACTAATG TCATCTAGAG TACTTATTGG TGTCAGTGGT AATGTACATG
TCAGATATTC TAGTAATGGT TTTGACTAGA TAACTTTCAT TATTAAATCC TGTAAATGCC CCTACTCTTA AGTACTAACC
AATTTTAAGG TATGATTATT GATTGATTAG TGCTTAGAAA ATAGGTGTAC CGGGTGAGAA CAAAGAAATA TTCATGACTT
TTGTTGGAAG TCCCACGTCG ACTAGAGATA AGGTCAATTT AGAATATATA AGTGGGTGCA AACCTTACCT TACAAGCCGG
TTTTGTGGGG TTGAGTTAAG CTTAAAGTCC ACTTCTTAAC ATGGTATCAG AGCTAGGTTA GAACCTATCC TAGCGATATT
TTGTTGTTTG TTGGGCATAT TGTTCCGCCT GTTATCGGGC CATTATCAGA CCATCAATGT CTAGTCTCAC GCTCGAGATG
TATATACCTC GCGTGAGAGG GTGTGTTGGA AGTTCCACAT CGACTAGAGA TAAGACCAAT TTAAAATATA TAAGTTGATG
CAAACCTCAT TTTACAACTT CTTTTGCTAC TTTTGAGCTG CTGGTTTAGT AAAGTATGCA TTATGTGGGC TCTCAATCTT
GATCCAGTTT CCATTTTTAA TGTTTTTTGA ATTGCAGCTT CAGGTGTAAG TCAAGCAGTT CAAGCTTTAA AGGGAGAAGT
TGACGTGCTA ATCAAGGGAG TAGGAGAAAG AAATGTAGCA AAAGAAGTAA AACATATTCT TGAGATGGTA CTTTCTTGTT
TTTTCCTGGT CTCTAGTCCA TAAGCATCAT TACGTCACAC AATGACTTTG GTACTCCTTT TTACCAGCAT GGAAGGTTGA
TGCTGATTGT CTGTAAAAAA TACATGCCCT TGGACTATGG CATGTCTAAA AATCCTACCC TATATATCAT TATTTAACCC
CTGACTTGGT TGTTATGCAT TTGTTGTAGG CTAGACGAGC ATCATCGAAG CGGGAAACTC TCCATACAGA TTTTCTAACA
CCTCCAGTGC TAAAGGAATC TATGCAAATT TTGGAAAAAT TAGCAGACGT GAAAGCAATT GCTCAAGGAG GTTATCCTCA
GGTAAATATT CAGATAAATG CTTTCCAGTC CCTCCATACT AAAGTTATTT GAATTTGTGT GTAGATGTAA CACTTGTATT
CTCTATAGGC TGAACGCTGT CGGATATCAG TTGGACATCC AGAAGAACTG ACTAGTGATC CAGATGTTAT TTCAGCATTA
AGGTAAATCT TCTAATTTCA TTACTAAAAA TTTTCAAGCT CATTAGATCC AATAATGTTT CTAGAAGTGT GCTAATAGTT
ACATAAAATT ACTTCAGCAT TAAAGGGAAC TTCCAGTTTG AACCTTGCTC ACATGGTGAC TTCCTTGGCT CAATTCTTGG
TACAGGAATT GTCAGGGAGA AACTTGGGGA TATTATATTG CAGGTATTTC TTCAATTAAA TTTATTTCAG GAAGGTTCTG
TTTAAAACCT TGCTATGTTC ACATGAGTGC TAAGGTTGTT GAGTAGACAT TTTTAGCTTC TAATGGACTT GCTGTTCATA
GTACGTCATA ATCTGGAATT TGTTACGTTA CTTTTTCATC TTATGGGTTT TTATACTTGC TGATTTTGTT CTAATTTCCC
TGTCTTCTCT TGTCCTGTAC ATACTAAAAG ATTTTTTGTC TAATCTGCTC TTATCTCTAA GTTGATGACT TCTCTTTGTT
GTTTGATGAG TCAATATTTT TATTATCTTT CTACTTGTAT CAATAGAGTG CATTTAATAG GAAGATTATT CTTACGATGG
ATCCAAACTG AATCAAATCA GTGTCAAAAA AGAAAAGAGT CAAATCTGTC AAGAAAACAA TATTAAGAAG TGTGACATTT
GTAGCTCTTG TTTGCTTTCA TTTTGAGTTT TATTTTACCA TTTTGTTCTG TTTGACTTTA CAGTGTGCAT GTACAGCAGC
CTACACATAT TTTAGGAAAC TTAGACTTTG TTATCTTTGT TATCCAGGGA GAACAGGGTG CGCAAATTAT TGTTGTGCCA
GAACTGGTTG AATTTCTTAT GTCAACCTTG GTTAAGGTAG CTTTTTACAG TTTACTTTTC TAGTTAAAAA TCTAATTCTC
AGAAGGAATA GTTGTGATTG TAATAGTTAA TATTTGATTG CCATTGATGT GGATATGAAC GTTGTTTCCA AAAATCTATG
ATAGTAGTAT GGCAGAATGT TAAAAAATGA AATATTACAG AATTATTTAT ATTCATATAG ATAATATTTC TTAAGTTCAT
TTATAAGAAT AATATATATC CATTCCAAAA ATATCTAGGC TAACAAGTTG AAATATTTTG GTGTGTTTCA GGGCCAATTT
TTATGTTTGT TTTTGTTTTA GGTTCTAATC CAATACAACT TAGAAATAAT AACTAAAAAG ATATTAGAGA AATCTTAAAT
AGCATTCTGA CTGCTTTCTT GTTATTCAGG TTCGTAATGT TCCTGTAACT TGCACCAAGA TACCATTAAT TTCTCTTGAT
TATGAACCAC CAAGGTGCAG TATTAAACTG AGCTCAACTT CACTTGACAT TTGTGTCAGT TAGACTTTTA CTGAATTTGT
TTATTGTGCA GAACAAAATC ATTCAAAACT ATAGAAGCAT CGCTAAGAGT TGATGCACTT GCTAGTGCCG GATTTAAGAT
TTCACGCTCA AAGCTAGTTG AGATGATAAG GTTGGTAATC TCGGACTTAA CTTAAGTAAT ATCTCATCTG TCAATTATCT
GTAATTTGTT GGTTGCCTAC AATACACTTA TGAACATTGC AAAGATTTAT GCATGGCTTC CTCTTCCCCT TTCTTTCAAT
GTTGCCATTA TCCACAAATG TACTCATGTT CTTGCAACTA AAACTGCTTG AACTTTAGCA GCTATTTTGG CATATAATCT
GATGAGAAAA CAATAAAGAC CATTCTGATA TTTTTTTTTT GGGAAAGGAT ATTGACATCA CACTAAGAAA GAGAGAATAT
GAGTGATAAG TCATGAAATT AATCATTACA GGTTACCCTC ATAAGATTAA ATTTGACTTC TTATAACTTA GAATTCCAAA
AAGCTTATCA TAAAGAGAAA TCTCATTTTC TGTCAAAAAG GATAGTATCA GAACCTATGT GTATAGTCTA TATAGTTTAG
CACTCCACTT GAAACAAATC ATATTAATCA AATATGGACA TTTTGAGAAA TGAACATTTA GCATGGCTTG CTCTTGATGA
CAAGACCTTG GTTAGATACA ATAACTGTGT TCTACATATG CTTGTAGCAA TGGTGATGTG CGTGTCAACT GGATCCCTGT
TACTACCAAA GGAAACACAC TGAAGAGTGG AGATATTGTA TCAGTCAGTG GAAAGGGAAG ATTAAAGGTA ACTTGCCAAA
ACTTAAAATA ATTATTGGAT TATCTGAATG ATTTTGGCTA CATTAGTTGG TAATGTTTCA CTTCATCTGG GACCAGATAG
GAGAAATAAA CTCTACAAAG AAAGGAAAAT TTGCAGTGGA GCTCATTCGG TATTTGTAGA AGTTCTGAAG ACATTTCTGT
AGGAAGCTTT AGCCTCATGT AAGTAAAACT GGAGAGAGGC AAAAGTTGTA CAGAGTAATA TTATTATTCC CTCCATTTCA
AGATTATTGA TGTTCATCTT AAACCAAGAG CTGTGATTTG TATCTGATAG TGATCTTATT CAGTAATATC AGCCCAAACG
ATTTCTTGTT CTGAATTGAG ACCATTTAGC ATAGAGAGAT ATGCCATTTG CTGATAA

>Vigan.07G132700.01
GTTGGTGAGT TCGAGGTAAT CCCAACAAAG GTGGAACCAC CATGGCTGCA GCCACAAGCT TTGGAACTGC ATGTATTCTA
AGAAGAGCAG CTCAGGCATT TGCAGTATCA CATTCTCATA TCATCAACAG CAATGCCACC TTCTCTTTTC AAAGGAAACT
TTCCTCTCAT ATTCTATCCG TTTCTACTAG TTCAGCTTCA GGTGTAAGTC AAGCAGTTCA AGCTTTAAAG GGAGAAGTTG
ACGTGCTAAT CAAGGGAGTA GGAGAAAGAA ATGTAGCAAA AGAAGTAAAA CATATTCTTG AGATGGCTAG ACGAGCATCA
TCGAAGCGGG AAACTCTCCA TACAGATTTT CTAACACCTC CAGTGCTAAA GGAATCTATG CAAATTTTGG AAAAATTAGC
AGACGTGAAA GCAATTGCTC AAGGAGGTTA TCCTCAGGCT GAACGCTGTC GGATATCAGT TGGACATCCA GAAGAACTGA
CTAGTGATCC AGATGTTATT TCAGCATTAA GCATTAAAGG GAACTTCCAG TTTGAACCTT GCTCACATGG TGACTTCCTT
GGCTCAATTC TTGGTACAGG AATTGTCAGG GAGAAACTTG GGGATATTAT ATTGCAGGGA GAACAGGGTG CGCAAATTAT
TGTTGTGCCA GAACTGGTTG AATTTCTTAT GTCAACCTTG GTTAAGGTTC GTAATGTTCC TGTAACTTGC ACCAAGATAC
CATTAATTTC TCTTGATTAT GAACCACCAA GAACAAAATC ATTCAAAACT ATAGAAGCAT CGCTAAGAGT TGATGCACTT
GCTAGTGCCG GATTTAAGAT TTCACGCTCA AAGCTAGTTG AGATGATAAG CAATGGTGAT GTGCGTGTCA ACTGGATCCC
TGTTACTACC AAAGGAAACA CACTGAAGAG TGGAGATATT GTATCAGTCA GTGGAAAGGG AAGATTAAAG ATAGGAGAAA
TAAACTCTAC AAAGAAAGGA AAATTTGCAG TGGAGCTCAT TCGGTATTTG TAGAAGTTCT GAAGACATTT CTGTAGGAAG
CTTTAGCCTC ATGTAAGTAA AACTGGAGAG AGGCAAAAGT TGTACAGAGT AATATTATTA TTCCCTCCAT TTCAAGATTA
TTGATGTTCA TCTTAAACCA AGAGCTGTGA TTTGTATCTG ATAGTGATCT TATTCAGTAA TATCAGCCCA AACGATTTCT
TGTTCTGAAT TGAGACCATT TAGCATAGAG AGATATGCCA TTTGCTGATA A

>Vigan.07G132700.01
ATGGCTGCAG CCACAAGCTT TGGAACTGCA TGTATTCTAA GAAGAGCAGC TCAGGCATTT GCAGTATCAC ATTCTCATAT
CATCAACAGC AATGCCACCT TCTCTTTTCA AAGGAAACTT TCCTCTCATA TTCTATCCGT TTCTACTAGT TCAGCTTCAG
GTGTAAGTCA AGCAGTTCAA GCTTTAAAGG GAGAAGTTGA CGTGCTAATC AAGGGAGTAG GAGAAAGAAA TGTAGCAAAA
GAAGTAAAAC ATATTCTTGA GATGGCTAGA CGAGCATCAT CGAAGCGGGA AACTCTCCAT ACAGATTTTC TAACACCTCC
AGTGCTAAAG GAATCTATGC AAATTTTGGA AAAATTAGCA GACGTGAAAG CAATTGCTCA AGGAGGTTAT CCTCAGGCTG
AACGCTGTCG GATATCAGTT GGACATCCAG AAGAACTGAC TAGTGATCCA GATGTTATTT CAGCATTAAG CATTAAAGGG
AACTTCCAGT TTGAACCTTG CTCACATGGT GACTTCCTTG GCTCAATTCT TGGTACAGGA ATTGTCAGGG AGAAACTTGG
GGATATTATA TTGCAGGGAG AACAGGGTGC GCAAATTATT GTTGTGCCAG AACTGGTTGA ATTTCTTATG TCAACCTTGG
TTAAGGTTCG TAATGTTCCT GTAACTTGCA CCAAGATACC ATTAATTTCT CTTGATTATG AACCACCAAG AACAAAATCA
TTCAAAACTA TAGAAGCATC GCTAAGAGTT GATGCACTTG CTAGTGCCGG ATTTAAGATT TCACGCTCAA AGCTAGTTGA
GATGATAAGC AATGGTGATG TGCGTGTCAA CTGGATCCCT GTTACTACCA AAGGAAACAC ACTGAAGAGT GGAGATATTG
TATCAGTCAG TGGAAAGGGA AGATTAAAGA TAGGAGAAAT AAACTCTACA AAGAAAGGAA AATTTGCAGT GGAGCTCATT
CGGTATTTGT AG

>Vigan.07G132700.01
MAAATSFGTA CILRRAAQAF AVSHSHIINS NATFSFQRKL SSHILSVSTS SASGVSQAVQ ALKGEVDVLI KGVGERNVAK
EVKHILEMAR RASSKRETLH TDFLTPPVLK ESMQILEKLA DVKAIAQGGY PQAERCRISV GHPEELTSDP DVISALSIKG
NFQFEPCSHG DFLGSILGTG IVREKLGDII LQGEQGAQII VVPELVEFLM STLVKVRNVP VTCTKIPLIS LDYEPPRTKS
FKTIEASLRV DALASAGFKI SRSKLVEMIS NGDVRVNWIP VTTKGNTLKS GDIVSVSGKG RLKIGEINST KKGKFAVELI
RYL*