GBrowse Details

Vigan.07G130100.01

Basic Information:
Name: Vigan.07G130100.01
Multiple alignment
Variant Information
Position: Chr07:14081061..14083971 (- strand)
Length: 2911
Functional Information:
Description: Similar to Uncharacterized protein. [I1M393, Glycine max]
GO: Biological Process: glycerol ether metabolic process (GO:0006662)
Biological Process: cell redox homeostasis (GO:0045454)
Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
InterPro: Thioredoxin (IPR005746)
Thioredoxin-like fold (IPR012336)
Thioredoxin domain (IPR013766)
Thioredoxin, conserved site (IPR017937)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:189.08,58.09,76.30,557.76,25.85,90.82,14.93,84.77
Arabidopsis thaliana homolog: AT3G15360.1
Automatic updates:
Name: NM_001249138 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526924 (LOC100526924), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:14081061..14081438 (- strand)
Length: 378
Type: three_prime_UTR
Position: Chr07:14081439..14081752 (- strand)
Length: 314
Type: CDS
Position: Chr07:14083558..14083789 (- strand)
Length: 232
Type: CDS
Position: Chr07:14083790..14083971 (- strand)
Length: 182
Type: five_prime_UTR

>Vigan.07G130100.01 class=Sequence position=Chr07:14081061..14083971 (- strand)
CTGCAAGATG TAAACCAATG GGAGTGTCTT AGTGTCGATT CAGTTTCATC TCATCCACAC AATAATAGTA CCAATATCTT
CCACAAAAAA AAGTAGAAAT AGTATTGGGA ATTGTAACAT AGTTCAACGT AACACTCTTT TGATTCCACA ATTCTTCTTC
TGGACCTGCG ATTCTCGCAA TCATGGCCAC CTTGCAACTC CAATCCCTAA CCCTCACTCG CTCCTCCACA CTCCCTTCCC
TCACCTCTCC ACCGATTCCC GTCACCGCCC GCCTCAACTC CGCTGCGCTG CCGCGCTACT CTGGCCTCCG GCTCCGAGCC
ACCGTTGGAA CCGTTTTTTC GACTCGCGCC GCCTCGAGAA CCGCTCCTCG CGGCGGACGC ATCGCTTGTG AGGCACAGGA
TACCGCCATC GAAGGTTACG TTTCGATTTC GTTGCGAAGA TTTGTTATTT AGGTTCTGTG CGAGTTTTGT GATGTCGTTT
TGATTTGTTA GATGTTTTAT GAAATTTCCT TTGCGCTATG CGGATGTGGA ATTTTAGAAT GATTGAATTA TTCCAAAGAT
TATGCTAATT ATTTAGCCTT TGAGCATTTT GGTGAGTGAA GCTAAAAAAA GTAGAACAGT TTTTTTTTTT TTCATTTGAT
ATCCTTTTCT TTTGTATTCT GTTTTTTCTT TGACGCCTAA TATGATGTAG ATCTGGACTT CCAGTGCTTT GGTTGTTTCT
TACAACTGTG CATAGTTTGA AACGTTTCTT ACATAATTAT CTGTTTTGTG GTGAGAAAAA TGGAATAGCT GGAATTGTTT
GAAGAGTTTT TCCTTGTATA TACATGTACC TGTGTTTTAT AACCTAACTA TATCTCTATT GGCAACAGGA CTAATTTTAC
GGTGTTAGCG TATCATGCCT GTAGTCATAA GTTTAGTGAA CAACTGGAAC AGAAACTACA TCATCATTTA AAGTCACTCT
CGCAGGCCTT TTCATTTTCT TCTGTAATGT TTCGCATCGA CCCATTACAT GTAATGTAAG GTTAAATATT TGCATGAACG
TATTATTATA ATCAATTCCT TCCCTCTCGG TGAAGTCTCT AGCAACCAAT CTTGCCTTGA ATATTTTCTA ATTTGTTTCT
AGATTTTTTT TTTGTTTGAG AATGCATTTA CAACTGACCA TCCTAGAGCC AACAAGTTTA TGAACCAAAT TTTAGGTATT
GTTCAAACGA GGGGATTCAT CTCATCCTTC ATGGCATCTA ACTTGAGTTT TCTCCTTACA TGCTAGAGTA GGCAATAATA
CACTTAAGGG TTCATCCTGT AACACGTCAC TAGCAACTAC TAAGGAGAAT GCAGTAAGAT CTGCATATTC ATACCTTTTT
CAAAGCTTTG ATTGTTCTCC TTGTTCTAAG ACTGACAATA CTATAATTAT CATTAGCGTG TTTGTCTTCA TCGTGTCCGA
CCCTTCTTCT ACAAGTTCAT CTAATTCATC CTTCTGTAGA AAGTCAGACG CCATGCCAAT CTCTGCCGCA ACATTTTCCT
TTTTACTATC ATGATTAATC CAAGACTCAC ATCCTGAAAC TTTTGACTTA TAAGTCATTT TAAAATTTAT GTCTATACAC
ATTCTCTATA TCATAAACAT GCATTTAACT ACACATGCTT CTAGGTTTGC TTGCCTTATA TGAGCATATG CAACAAAGCC
AAATATTCTC AGATTATCAA GGTTGGGAGA ATGCTTTTGA TTAAATTTCC TCAATACGTA ATAGTAACAA CTTAAGCCCT
TGGGAACTCC AATTGGGTTC TCCACCGGGC ACTTCCAGCT TTTGAAGTTT TCAAATGTTT CATCTTTAGT TTTATTAGGG
TAGACCCACA TTGCTATGTT GTTTGGACCT AGTAGACCAT CTGGGTATGA ATTATTGTAG GACCTAATAG TACTTTGAAG
GTTTACTTTT TGGTAGTGTT GAAACAAGAC TCCTCTCCGA AGAAAAAAAA AATTGCAATC TTTTTTCTTT GCCATACAAC
CTAAAAATAT TTTTAAATTT TTAGTAGTAT TTTTTTCCAT TTTGCCTGTT TGTGCTTCAT TTGGCTGGTA TGGGCATGTT
TTACATTTTA GCATCATCAC TTGTCATTTT ACTCTATGAG AAGCACGTGG ATCTTAATTA TCTACTGCCT TACATTTCCG
GAGTATTGTT GCATGAATAC TTGCTAAAGT GAAACACTTT GTATCATTGA ATATTGCAGT GACTTCTATT ACTGATGCAA
ATTGGCAATC ACTTGTGCTT GAATCCGAGA CTCCCGTACT GGTTGAATTC TGGGCCCCAT GGTGCGGTCC CTGCCGAATG
ATCCACCCGA TAATCGATGA ACTGGCCAAG GAATATGTTG GTAAGCTGAA GTGTTACAAA CTCAATACTG ATGAGAGCCC
TTCAACTGCC AGCCGTTATG GGATTCGAAG CATTCCCACT GTCATTATCT TTAAGAATGG TGAGAAGAAA GATACAGTTA
TTGGAGCTGT GCCCAAGACA ACATTGACCT CAAGCATAGA AAAATTCCTG TGAGCAAATG AAAGTAAAGC TATTTTTCTC
GTTAGCTTCC TCTCATCTAA GCCAAATATC AGGTTGGGAT TATTTGTTTC TTAAATAACC ATTTATGGTC CTGTATAGTT
ATGGATGCAA ACCATATTTT CTGATTTCTT TAGATAATCA TAATTAACAA TGTGTTGCGT AAATTTGCCA TCTATTATAT
CTCAAATTAA ATCTATTTTG CATCTTGGCT CCTGTTCTCT CCAGTTCTTA ACCGTTCACA TAATTGGCTG AAGATTGTGT
GGGCACGTGG GGGTTACGAA ACAAATTCTC ATTAAAATGA GATAAATGTA GTTGAAAAGA AAAATCTTAT CAAAATGAGT
AATTGAAGAT TAGTTAATGA ATATTTCATG T

>Vigan.07G130100.01
CTGCAAGATG TAAACCAATG GGAGTGTCTT AGTGTCGATT CAGTTTCATC TCATCCACAC AATAATAGTA CCAATATCTT
CCACAAAAAA AAGTAGAAAT AGTATTGGGA ATTGTAACAT AGTTCAACGT AACACTCTTT TGATTCCACA ATTCTTCTTC
TGGACCTGCG ATTCTCGCAA TCATGGCCAC CTTGCAACTC CAATCCCTAA CCCTCACTCG CTCCTCCACA CTCCCTTCCC
TCACCTCTCC ACCGATTCCC GTCACCGCCC GCCTCAACTC CGCTGCGCTG CCGCGCTACT CTGGCCTCCG GCTCCGAGCC
ACCGTTGGAA CCGTTTTTTC GACTCGCGCC GCCTCGAGAA CCGCTCCTCG CGGCGGACGC ATCGCTTGTG AGGCACAGGA
TACCGCCATC GAAGTGACTT CTATTACTGA TGCAAATTGG CAATCACTTG TGCTTGAATC CGAGACTCCC GTACTGGTTG
AATTCTGGGC CCCATGGTGC GGTCCCTGCC GAATGATCCA CCCGATAATC GATGAACTGG CCAAGGAATA TGTTGGTAAG
CTGAAGTGTT ACAAACTCAA TACTGATGAG AGCCCTTCAA CTGCCAGCCG TTATGGGATT CGAAGCATTC CCACTGTCAT
TATCTTTAAG AATGGTGAGA AGAAAGATAC AGTTATTGGA GCTGTGCCCA AGACAACATT GACCTCAAGC ATAGAAAAAT
TCCTGTGAGC AAATGAAAGT AAAGCTATTT TTCTCGTTAG CTTCCTCTCA TCTAAGCCAA ATATCAGGTT GGGATTATTT
GTTTCTTAAA TAACCATTTA TGGTCCTGTA TAGTTATGGA TGCAAACCAT ATTTTCTGAT TTCTTTAGAT AATCATAATT
AACAATGTGT TGCGTAAATT TGCCATCTAT TATATCTCAA ATTAAATCTA TTTTGCATCT TGGCTCCTGT TCTCTCCAGT
TCTTAACCGT TCACATAATT GGCTGAAGAT TGTGTGGGCA CGTGGGGGTT ACGAAACAAA TTCTCATTAA AATGAGATAA
ATGTAGTTGA AAAGAAAAAT CTTATCAAAA TGAGTAATTG AAGATTAGTT AATGAATATT TCATGT

>Vigan.07G130100.01
ATGGCCACCT TGCAACTCCA ATCCCTAACC CTCACTCGCT CCTCCACACT CCCTTCCCTC ACCTCTCCAC CGATTCCCGT
CACCGCCCGC CTCAACTCCG CTGCGCTGCC GCGCTACTCT GGCCTCCGGC TCCGAGCCAC CGTTGGAACC GTTTTTTCGA
CTCGCGCCGC CTCGAGAACC GCTCCTCGCG GCGGACGCAT CGCTTGTGAG GCACAGGATA CCGCCATCGA AGTGACTTCT
ATTACTGATG CAAATTGGCA ATCACTTGTG CTTGAATCCG AGACTCCCGT ACTGGTTGAA TTCTGGGCCC CATGGTGCGG
TCCCTGCCGA ATGATCCACC CGATAATCGA TGAACTGGCC AAGGAATATG TTGGTAAGCT GAAGTGTTAC AAACTCAATA
CTGATGAGAG CCCTTCAACT GCCAGCCGTT ATGGGATTCG AAGCATTCCC ACTGTCATTA TCTTTAAGAA TGGTGAGAAG
AAAGATACAG TTATTGGAGC TGTGCCCAAG ACAACATTGA CCTCAAGCAT AGAAAAATTC CTGTGA

>Vigan.07G130100.01
MATLQLQSLT LTRSSTLPSL TSPPIPVTAR LNSAALPRYS GLRLRATVGT VFSTRAASRT APRGGRIACE AQDTAIEVTS
ITDANWQSLV LESETPVLVE FWAPWCGPCR MIHPIIDELA KEYVGKLKCY KLNTDESPST ASRYGIRSIP TVIIFKNGEK
KDTVIGAVPK TTLTSSIEKF L*